View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20518_low_4 (Length: 546)
Name: NF20518_low_4
Description: NF20518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20518_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 5 - 524
Target Start/End: Complemental strand, 11558329 - 11557815
Alignment:
| Q |
5 |
aattttggttaattcagagactatatatagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctg |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11558329 |
aattttggttaattcagagactatatatagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctg |
11558230 |
T |
|
| Q |
105 |
tgatcgttttgtaggatctttgaggaattcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaacagtgccttttggctgg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11558229 |
tgatcgttttgtaggatctttgaggaattcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaacagtgccatttggctgg |
11558130 |
T |
|
| Q |
205 |
cttgcatcatcgtcggtggttgcgcgaatagagactctaaccccaccaatgctatcaggagttaaatggttcaattccacttgaccatgcattgttaagc |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11558129 |
cttgcatcatcgtcggtggttgcgcgaatagagactctaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgttaagc |
11558030 |
T |
|
| Q |
305 |
attcacaaaacatcttcaccattctatcagcaatctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatataatattg |
404 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11558029 |
attcacaaaacatcttcaccattctatcagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatataatatta |
11557930 |
T |
|
| Q |
405 |
attaacttcgctaaatataaaatttacaaggaaaatagatgaatagagatatttggaagggtaaatttagaagacaaagtgtgattaacctcctatagtt |
504 |
Q |
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| T |
11557929 |
attaaattcgctaaatataaaatttacaaggaaaatagatgaatagagatatttggaagggtaaatttagaagacaa-----gattaacctcctatagtt |
11557835 |
T |
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| Q |
505 |
tcttcaacaggtattgcttc |
524 |
Q |
| |
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|||||||||||||||||||| |
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| T |
11557834 |
tcttcaacaggtattgcttc |
11557815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 13 - 524
Target Start/End: Complemental strand, 11544903 - 11544394
Alignment:
| Q |
13 |
ttaattcagagactatatatagataacgtttgacatatccaaggaccaaaaccacaatttactctcaattataaaacaaagcatgttacctgtgatcgtt |
112 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||| |||||||||||||||||| |||| |||||||||||||||| | |
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| T |
11544903 |
ttaattcagagactatata--gataacgtttgacatattcaaggaccaaagctacagtttactctcaattataaagcaaaagatgttacctgtgatcgct |
11544806 |
T |
|
| Q |
113 |
ttgtaggatctttgaggaattcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaacagtgccttttggctggcttgcatc |
212 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||| |
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| T |
11544805 |
ttgtaggatctttgaggaattcaaaaactttcagagcaggcagagggagccaaagggtggtagccgcagtaacaatagtgccatttggctggcttgtatc |
11544706 |
T |
|
| Q |
213 |
atcgtcggtggttgcgcgaatagagactctaaccccaccaatgctatcaggagttaaatggttcaattccacttgaccatgcattgttaagcattcacaa |
312 |
Q |
| |
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|||||| ||||| ||||| ||||||||||| |||||||||||| || ||||||||||||||||||||| ||||||| |||||||||| | ||||||| |
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| T |
11544705 |
atcgtccgtggtgctgcgaaaagagactctaataccaccaatgctagcaagagttaaatggttcaattccaattgaccaggcattgttaaactttcacaa |
11544606 |
T |
|
| Q |
313 |
aacatcttcaccattctatcagcaatctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatataatattgattaactt |
412 |
Q |
| |
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||||| || |||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| || |
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| T |
11544605 |
aacattttgaccattctctgagcaagctttatcacactattcctcccttcaagtgtttggatcactgaacaataattagcaatacaatattaattatttt |
11544506 |
T |
|
| Q |
413 |
cgctaaatataaaatttacaaggaaaatagatgaatagagatatttggaagggtaaatttagaagacaaagtgtgattaacctcctatagtttcttcaac |
512 |
Q |
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| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
11544505 |
agataaatataaaatttacaaggaaaatagatgaatagagatttttggaagggtaaatttagaaaacaaagtgtgattaacctcctatagtttcttcaac |
11544406 |
T |
|
| Q |
513 |
aggtattgcttc |
524 |
Q |
| |
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|||||||||||| |
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| T |
11544405 |
aggtattgcttc |
11544394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 102 - 376
Target Start/End: Original strand, 12064193 - 12064468
Alignment:
| Q |
102 |
ctgtgatcgttttgtaggatctttgaggaattcaaaaactttctgagcaggcagagggagccaaagggtggtagcagcagtaacaacagtgccttttggc |
201 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| |
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| T |
12064193 |
ctgtgatcgttttgtaggatctttgagcaattcaaaaactttctgagcaggcagagggagccaaagagtggtagcagcagttacaacagtgccatttggc |
12064292 |
T |
|
| Q |
202 |
tggcttgcatcatcgtcggtggttgcgcgaatagagactctaa-ccccaccaatgctatcaggagttaaatggttcaattccacttgaccatgcattgtt |
300 |
Q |
| |
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||||||| ||||| ||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
12064293 |
tggcttgtatcattgtcggtggtatcgcgaagagagactctaaaccccaccaatgctatcaagagttaaatggttcaattccacttgaccaggcattgtt |
12064392 |
T |
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| Q |
301 |
aagcattcacaaaacatcttcaccattctatcagcaatctttatcacactattcctcccttcaagtgtttggatca |
376 |
Q |
| |
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||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12064393 |
aagcattcacaaaacattttgaccattctatcagcaagctttatcacactattcctcccttcaagtgtttggatca |
12064468 |
T |
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