View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20518_low_8 (Length: 258)

Name: NF20518_low_8
Description: NF20518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20518_low_8
NF20518_low_8
[»] chr4 (2 HSPs)
chr4 (151-248)||(32267170-32267267)
chr4 (20-78)||(32267042-32267100)
[»] chr5 (1 HSPs)
chr5 (25-77)||(19301508-19301560)


Alignment Details
Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 32267170 - 32267267
Alignment:
Q  151 ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32267170 ttatttctttcttctgtcatgtgtgttctgatgtgaccaccaagagacttcccacaaggaaacctcttgaagcaatatttgcatacaaacttcctatg 32267267  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 32267042 - 32267100
Alignment:
Q  20 gagaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggttt 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32267042 gagaatgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggttt 32267100  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 19301508 - 19301560
Alignment:
Q  25 tgcacaaacctcattgttttcttgggattttctcttagaccataaatgaggtt 77  Q
    |||||||||||  |||||||||||||||| ||||| ||||||||||| |||||    
T  19301508 tgcacaaacctagttgttttcttgggattctctctaagaccataaataaggtt 19301560  T

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