View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20518_low_9 (Length: 254)
Name: NF20518_low_9
Description: NF20518
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20518_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 3111908 - 3112131
Alignment:
| Q |
17 |
caactttttcattatcaacaaataaagaacnnnnnnncacaactgaatcttgatgatttttaagatgaaaatcaaacccttttaattcttgttctttctc |
116 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111908 |
caactttttcattatcaacaaataaagaacttttttgcacaactgaatcttgatgatttttaagatgaaaatcaaacccttttaattcttgttctttctc |
3112007 |
T |
|
| Q |
117 |
atattgatcccacttagattgaacaaaaaacccaagataagcccaaagagtaaccaaaatcagacacaaaactaaccggttgcttccaatccaagaaaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3112008 |
atattgatcccacttagattgaacaaaaaacccaagataagcccaaagagtaaccaaaatcagacacaaaactaaccggttgcttccaatccaagaaaac |
3112107 |
T |
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| Q |
217 |
gatgcattactactacctttgctt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
3112108 |
gatgcattactactacctttgctt |
3112131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 26269187 - 26268964
Alignment:
| Q |
17 |
caactttttcattatcaacaaataaagaacnnnnnnncacaactgaatcttgatgatttttaagatgaaaatcaaacccttttaattcttgttctttctc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26269187 |
caactttttcattatcaacaaataaagaactttttttgacaaccgaatcttgatgatttttaagatgaaaatcaaacccttttagttcttgttctttctc |
26269088 |
T |
|
| Q |
117 |
atattgatcccacttagattgaacaaaaaacccaagataagcccaaagagtaaccaaaatcagacacaaaactaaccggttgcttccaatccaagaaaac |
216 |
Q |
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||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
26269087 |
ataatgatcccacttagattgaacaaaaaaaccaagataagcccaaagggtaaccaaaaccagccacaatactaatcggttgcttccaatccaagaaaac |
26268988 |
T |
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| Q |
217 |
gatgcattactactacctttgctt |
240 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
26268987 |
gatgcattactactacctttgctt |
26268964 |
T |
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