View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20519_high_12 (Length: 451)
Name: NF20519_high_12
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_12 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Complemental strand, 5604250 - 5603830
Alignment:
| Q |
11 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5604250 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
5604151 |
T |
|
| Q |
111 |
agctcctgcaccacatgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5604150 |
agctcctgcaccacatgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataa |
5604051 |
T |
|
| Q |
211 |
gatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactagtaagttgtttgtgtatttgcttatacttatagcaccgtgattc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
5604050 |
gatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactaataagttgtttgtgtatttgcttttacttatagcaccgtcattc |
5603951 |
T |
|
| Q |
311 |
acaaattaattcattgtcacaatttctaaagaacgagtctattataggatattacacacatttattatggttttacaacttttcccatctaagttccttc |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
5603950 |
acaaattaattc--tgtcacaatttctaaagaacgagtctattataggatattacacacatttattatggttttagaacttttctcatctaagttccttc |
5603853 |
T |
|
| Q |
411 |
caacattgttaatttactagattc |
434 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
5603852 |
caacattgtt-atttactagattc |
5603830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Original strand, 5631120 - 5631540
Alignment:
| Q |
11 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5631120 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
5631219 |
T |
|
| Q |
111 |
agctcctgcaccacatgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5631220 |
agctcctgcaccacatgaacaccacttggtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaatcgaccaaataa |
5631319 |
T |
|
| Q |
211 |
gatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactagtaagttgtttgtgtatttgcttatacttatagcaccgtgattc |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
5631320 |
gatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactaataagttgtttgtgtatttgcttttacttatagcaccgtcattc |
5631419 |
T |
|
| Q |
311 |
acaaattaattcattgtcacaatttctaaagaacgagtctattataggatattacacacatttattatggttttacaacttttcccatctaagttccttc |
410 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
5631420 |
acaaattaattc--tgtcacaatttctaaagaacgagtctattataggatattacacacatttattatggttttagaacttttctcatctaagttccttc |
5631517 |
T |
|
| Q |
411 |
caacattgttaatttactagattc |
434 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
5631518 |
caacattgtt-atttactagattc |
5631540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 204 - 356
Target Start/End: Original strand, 5648848 - 5649000
Alignment:
| Q |
204 |
caaataagatctcaatatagcatgtttgaattctgaaatcacaggaaactaattttcagactagtaagttgtttgtgtatttgcttatacttatagcacc |
303 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
5648848 |
caaatatgatttcaatatagcatgtttgaattctgaaatcacatgaaactaatttttaaactagtaagttgtttgtgtgtttgcttttacttatagcacc |
5648947 |
T |
|
| Q |
304 |
gtgattcacaaattaattcattgtcacaatttctaaagaacgagtctattata |
356 |
Q |
| |
|
| ||||||||| |||| | | ||||||||||||||||||||||||||||||| |
|
|
| T |
5648948 |
atcattcacaaactaatgcttggtcacaatttctaaagaacgagtctattata |
5649000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 13168321 - 13168430
Alignment:
| Q |
11 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
110 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||| || ||| ||| |||||||| ||||||| ||||||||||||| | ||| ||||||| |
|
|
| T |
13168321 |
attatactgataacttggggaataagtttagtttacaggctctgctcaattttatgttactgcataataattctgtttatgagcagatgttcgcttgaag |
13168420 |
T |
|
| Q |
111 |
agctcctgca |
120 |
Q |
| |
|
||||| |||| |
|
|
| T |
13168421 |
agctcatgca |
13168430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 5648613 - 5648718
Alignment:
| Q |
15 |
tactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaagagct |
114 |
Q |
| |
|
||||||||| ||||||| |||||| |||||| |||||||||||||| ||| ||||||||||||| || ||||||||| ||||||||| ||||||||||| |
|
|
| T |
5648613 |
tactgataatttggggactaaattcagtttagaggctctgttccattttatgttactgcaaaatatttctgtttatgaacaggtattctcttgaagagct |
5648712 |
T |
|
| Q |
115 |
cctgca |
120 |
Q |
| |
|
| |||| |
|
|
| T |
5648713 |
catgca |
5648718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 6307247 - 6307144
Alignment:
| Q |
11 |
attatactgataacttggggaataaatttagtttacgggctctgttccattatattttactgcaaaataattatgtttatgagcaggtattcacttgaag |
110 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| | |||||||||||| ||| ||||||||||||||| ||||||||| |||| || |||||||| |
|
|
| T |
6307247 |
attataccgataacttagggaataaatttagtttattgactctgttccattttatggtactgcaaaataatttggtttatgagtaggtctttacttgaag |
6307148 |
T |
|
| Q |
111 |
agct |
114 |
Q |
| |
|
|||| |
|
|
| T |
6307147 |
agct |
6307144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 13168570 - 13168661
Alignment:
| Q |
268 |
taagttgtttgtgtatttgcttatacttatagcaccgtgattcacaaattaattcattgtcacaatttctaaagaacgagtctattatagga |
359 |
Q |
| |
|
|||||||||||| | ||||||| ||||| ||||||| | |||||||||||||||| | |||||||||||||||||| |||||||||||||| |
|
|
| T |
13168570 |
taagttgtttgtatgtttgcttttacttctagcaccatcattcacaaattaattcttgctcacaatttctaaagaacaagtctattatagga |
13168661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 5648736 - 5648802
Alignment:
| Q |
120 |
accacatgaacaccacttggtttggttccacagaagatgaa---agcaacaactgaagaggagagaaaaa |
186 |
Q |
| |
|
||||||||||||| || |||||||||||||||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
5648736 |
accacatgaacac---tttgtttggttccacagaagaagaagaaagcaacagctgaagaggagagaaaaa |
5648802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 13168464 - 13168523
Alignment:
| Q |
139 |
gtttggttccacagaagatgaaagcaacaactgaagaggagagaaaaactgttgaatgaat |
199 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| ||| |||||||| |
|
|
| T |
13168464 |
gtttggttccacagaagaacaaagcaatt-ctgaagaggagagaaaaaatgtcgaatgaat |
13168523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University