View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_high_15 (Length: 425)
Name: NF20519_high_15
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 102 - 405
Target Start/End: Original strand, 40639532 - 40639835
Alignment:
| Q |
102 |
caattcgttctattcgtctttttcttatgttaatcggttctatttgtctcaaacgaaaatatatacgattatattccaaaaagaaaaattgtatatgatt |
201 |
Q |
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| T |
40639532 |
caattcattctattcgtctttttcttatgttaatcggttctatttgtctcaaacgaaaatatatacgattatattccaaaaagaaaaattgtatatgatt |
40639631 |
T |
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| Q |
202 |
aatttgttgggttgcaggtgagaaattgggtttggcaacttcaccaccttacctctccttaatatcaaagggtaacaaaaatgaaaataatgtatccttc |
301 |
Q |
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| T |
40639632 |
aatttgttgggttgcaggtgagaaattgggtttggcaacttcaccaccttacctctccttaatatcaaagggtaacaaaaatgaaaataatgcatccttc |
40639731 |
T |
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| Q |
302 |
ataaatggtgttagctttgcttccgcaggtgctggaatatttgatggtacagatgaacgctatgtaagtcaccaattttatattcttttgaatgaagaag |
401 |
Q |
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| T |
40639732 |
ataaatggtgttagctttgcttccgcaggtgctggaatatttgatggtacagatgaacgctatgtaagtcaccaattttatattcttttgaatgaagaat |
40639831 |
T |
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| Q |
402 |
aata |
405 |
Q |
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|||| |
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| T |
40639832 |
aata |
40639835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 40639345 - 40639259
Alignment:
| Q |
19 |
ttttatagaagaagaaaaaataatctttttatgtttttgcaataggaaataaagnnnnnnnaagttttctcaagtttgttgagcaattc |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40639345 |
ttttatagaagaagaaaaaa-aatctttttatgtttttgcaataggaaataaag-ttttttaagttttctcaagtttgttgagcaattc |
40639259 |
T |
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