View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20519_high_16 (Length: 422)

Name: NF20519_high_16
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20519_high_16
NF20519_high_16
[»] chr7 (15 HSPs)
chr7 (216-285)||(23413894-23413964)
chr7 (87-152)||(38218343-38218408)
chr7 (116-152)||(43171205-43171241)
chr7 (89-153)||(49089158-49089222)
chr7 (89-152)||(34264597-34264660)
chr7 (113-152)||(37856183-37856222)
chr7 (118-152)||(22692087-22692121)
chr7 (98-152)||(28862084-28862138)
chr7 (118-152)||(30818031-30818065)
chr7 (112-152)||(2323307-2323347)
chr7 (87-151)||(6699839-6699902)
chr7 (108-152)||(31274553-31274597)
chr7 (120-152)||(34992360-34992392)
chr7 (112-152)||(43444638-43444678)
chr7 (108-148)||(45431971-45432011)
[»] chr8 (7 HSPs)
chr8 (87-152)||(26000552-26000617)
chr8 (39-92)||(37754676-37754729)
chr8 (91-152)||(5740781-5740842)
chr8 (17-90)||(13106596-13106669)
chr8 (87-152)||(40517272-40517337)
chr8 (104-152)||(5502374-5502422)
chr8 (112-152)||(37392145-37392185)
[»] chr2 (9 HSPs)
chr2 (87-152)||(1095828-1095893)
chr2 (91-152)||(8482228-8482289)
chr2 (89-152)||(9834075-9834138)
chr2 (22-89)||(14255420-14255487)
chr2 (118-152)||(3299139-3299173)
chr2 (104-152)||(12191961-12192009)
chr2 (104-152)||(19695700-19695748)
chr2 (112-152)||(25801830-25801870)
chr2 (104-152)||(45202141-45202189)
[»] chr3 (12 HSPs)
chr3 (86-152)||(30580136-30580202)
chr3 (118-152)||(50280121-50280155)
chr3 (91-152)||(28700475-28700536)
chr3 (87-152)||(50876354-50876419)
chr3 (118-152)||(19418191-19418225)
chr3 (98-152)||(43883316-43883370)
chr3 (118-152)||(50652391-50652425)
chr3 (23-88)||(46965988-46966053)
chr3 (91-152)||(53871028-53871089)
chr3 (91-152)||(55361229-55361290)
chr3 (112-152)||(43169770-43169810)
chr3 (112-152)||(47683804-47683844)
[»] chr6 (4 HSPs)
chr6 (104-152)||(3180012-3180060)
chr6 (107-152)||(16328713-16328758)
chr6 (14-92)||(29465654-29465732)
chr6 (118-158)||(29172987-29173027)
[»] chr1 (18 HSPs)
chr1 (108-152)||(47386818-47386862)
chr1 (89-152)||(27687513-27687576)
chr1 (89-152)||(40139129-40139192)
chr1 (112-152)||(43612097-43612137)
chr1 (104-152)||(47059899-47059947)
chr1 (39-94)||(43367805-43367860)
chr1 (118-152)||(11947798-11947832)
chr1 (118-152)||(31184284-31184318)
chr1 (91-152)||(1690449-1690510)
chr1 (91-152)||(14983787-14983848)
chr1 (91-152)||(16836111-16836172)
chr1 (95-152)||(41507194-41507251)
chr1 (88-152)||(31433505-31433569)
chr1 (118-158)||(39380853-39380893)
chr1 (112-152)||(40596071-40596111)
chr1 (112-152)||(42539421-42539461)
chr1 (112-152)||(48872045-48872085)
chr1 (104-152)||(51571418-51571466)
[»] chr4 (10 HSPs)
chr4 (89-152)||(27384190-27384253)
chr4 (104-152)||(32365676-32365724)
chr4 (112-152)||(54036546-54036586)
chr4 (89-152)||(29973042-29973105)
chr4 (118-152)||(3475872-3475906)
chr4 (118-152)||(11012144-11012178)
chr4 (118-152)||(24088598-24088632)
chr4 (103-152)||(17683362-17683411)
chr4 (91-152)||(42490923-42490984)
chr4 (112-152)||(4511828-4511868)
[»] chr5 (11 HSPs)
chr5 (114-152)||(9065434-9065472)
chr5 (86-152)||(12878759-12878825)
chr5 (104-153)||(4098625-4098674)
chr5 (122-152)||(14647565-14647595)
chr5 (26-92)||(24405846-24405912)
chr5 (91-152)||(19952014-19952075)
chr5 (21-90)||(33599078-33599147)
chr5 (91-152)||(34080297-34080358)
chr5 (121-165)||(8897372-8897416)
chr5 (112-152)||(13734377-13734417)
chr5 (112-152)||(14206403-14206443)
[»] scaffold0027 (1 HSPs)
scaffold0027 (118-152)||(133999-134033)
[»] scaffold0257 (1 HSPs)
scaffold0257 (87-152)||(23984-24049)
[»] scaffold0087 (1 HSPs)
scaffold0087 (87-152)||(24530-24595)
[»] scaffold0504 (1 HSPs)
scaffold0504 (108-152)||(11161-11205)
[»] scaffold0054 (1 HSPs)
scaffold0054 (112-152)||(31617-31657)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 23413894 - 23413964
Alignment:
Q  216 gttttaaaaaacacatttt-ctaaaatttatcttctatgaggtttatggatggaatcttgtcaagtgaaat 285  Q
    |||||||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  23413894 gttttaaagaacacatttttctaaaatttatcttctatgaggttcaaggatggaatcttgtcaagtgaaat 23413964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 38218343 - 38218408
Alignment:
Q  87 aaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||| |||| || ||||||||||||||| |||||| | |||| |||||||||||||||||    
T  38218343 aaaataaaaatataatataaatataagagataaaattgtcacaaaatgattgtacaaatatcattt 38218408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 43171205 - 43171241
Alignment:
Q  116 ataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||| ||||||||||||||||||||||    
T  43171205 ataaagttgtcataaaatggttgtacaaatatcattt 43171241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 49089158 - 49089222
Alignment:
Q  89 aataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattta 153  Q
    |||||||| |||| |||| ||||||||| |||||||| ||| | |||||||||||||| ||||||    
T  49089158 aataaaaatataatatgagtataagagaaaaagttgtaataaagtggttgtacaaataacattta 49089222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 34264660 - 34264597
Alignment:
Q  89 aataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||  ||| ||||||||  |||||||||| | |||||| |||||||||||||||    
T  34264660 aataaaaacataatgtgagtataagagcgaaagttgtcacaaaatggtcgtacaaatatcattt 34264597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 113 - 152
Target Start/End: Original strand, 37856183 - 37856222
Alignment:
Q  113 gagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  37856183 gagataaagttgtcacaaaatggttgtacaaatatcattt 37856222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 22692121 - 22692087
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  22692121 aaagttgtcataaaatggttgtacaaatatcattt 22692087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 28862084 - 28862138
Alignment:
Q  98 ataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||| |||||||| | ||| |||||||||||| ||||| ||||||||||||||||    
T  28862084 ataatatgaatatgaaagagaaagttgtcataaaatggatgtacaaatatcattt 28862138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 30818031 - 30818065
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  30818031 aaagttgtcataaaatggttgtacaaatatcattt 30818065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 2323347 - 2323307
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||||| ||| ||||||||||||||||||    
T  2323347 agagagaaagttgtcataaaattgttgtacaaatatcattt 2323307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 6699839 - 6699902
Alignment:
Q  87 aaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcatt 151  Q
    |||||||||||||||  ||| ||| ||||| ||| |||||||| |||| ||||||||||||||||    
T  6699839 aaaataaaaacataatgtgagtattagagaaaaa-ttgtcataaaatgattgtacaaatatcatt 6699902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 31274553 - 31274597
Alignment:
Q  108 tataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||| |||||||||| | | ||||||||||||||||||||    
T  31274553 tataagagaaaaagttgtcacaaattggttgtacaaatatcattt 31274597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 34992360 - 34992392
Alignment:
Q  120 agttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||| ||||||||||||||||||||||    
T  34992360 agttgtcataaaatggttgtacaaatatcattt 34992392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 43444678 - 43444638
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||||| | ||||||||||||||||||||    
T  43444678 agagagaaagttgtcataaagtggttgtacaaatatcattt 43444638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 45432011 - 45431971
Alignment:
Q  108 tataagagataaagttgtcatagaatggttgtacaaatatc 148  Q
    |||||||||||||||||||| | | ||||||||||||||||    
T  45432011 tataagagataaagttgtcacaaagtggttgtacaaatatc 45431971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 26000617 - 26000552
Alignment:
Q  87 aaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||||  ||| ||| |||||||||||||||||| |||||||||| |||||||||||    
T  26000617 aaaataaaaacataacgtgagtatgagagataaagttgtcataaaatggttgtaaaaatatcattt 26000552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 37754729 - 37754676
Alignment:
Q  39 acaaccatttatatgacaacttttcgaacaactgtaaatttacaaagaaaaata 92  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||||||||||    
T  37754729 acaaccatttgtatgacaacttttggaacaactttaaatttacaaagaaaaata 37754676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 5740781 - 5740842
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||  ||| ||| ||||| |||||||||| | | ||||||||||||||||||||    
T  5740781 taaaaacataatgtgagtatgagagaaaaagttgtcaaaaagtggttgtacaaatatcattt 5740842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 13106669 - 13106596
Alignment:
Q  17 ttaaatgaggtgtattattcgtacaaccatttatatgacaacttttcgaacaactgtaaatttacaaagaaaaa 90  Q
    ||||| ||| ||| ||||| | |||||||||||  |||||||||||  ||||||  ||||||||||||||||||    
T  13106669 ttaaaagagttgtgttatttgaacaaccatttaggtgacaacttttataacaaccataaatttacaaagaaaaa 13106596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 40517337 - 40517272
Alignment:
Q  87 aaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||||||| |||| ||| ||| | ||| || ||||| ||||||||||||||||| ||||    
T  40517337 aaaataaaaacataatatgagtatgagaaagaaaattatcataaaatggttgtacaaatataattt 40517272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 5502422 - 5502374
Alignment:
Q  104 tgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||| ||||| |||||||||| | | ||||||||||||||||||||    
T  5502422 tgaatatgagagagaaagttgtcacaaagtggttgtacaaatatcattt 5502374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 37392145 - 37392185
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  37392145 agagagaaagttgtcaaaaaatggttgtacaaatatcattt 37392185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 1095828 - 1095893
Alignment:
Q  87 aaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||||||| |||||||| ||||| ||| |||||||| ||||| ||||||||||||||||    
T  1095828 aaaataaaaacataatatgaatatgagagagaaaattgtcataaaatggatgtacaaatatcattt 1095893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 8482228 - 8482289
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||| ||||  ||||||| ||||| |||||||||||| | ||||||||||||||||||||    
T  8482228 taaaaatataatgtgaatatgagagagaaagttgtcataaagtggttgtacaaatatcattt 8482289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 9834075 - 9834138
Alignment:
Q  89 aataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||||| |||| ||| | ||| | |||||||||| |||||||||| |||||||||||    
T  9834075 aataaaaacataatatgagtatgaaagagatagttgtcataaaatggttgtataaatatcattt 9834138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 14255487 - 14255420
Alignment:
Q  22 tgaggtgtattattcgtacaaccatttatatgacaacttttcgaacaactgtaaatttacaaagaaaa 89  Q
    |||||||| ||||| | ||||||||||||  |||||||||| | |||||  |||||||||||||||||    
T  14255487 tgaggtgtgttatttgaacaaccatttatgcgacaacttttgggacaaccataaatttacaaagaaaa 14255420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 3299139 - 3299173
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  3299139 aaagttgtcataaaatggttgtacaaatatcattt 3299173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 12192009 - 12191961
Alignment:
Q  104 tgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||| ||||| |||||| ||||| ||||||| ||||||||||||||    
T  12192009 tgaatatgagagagaaagttatcatataatggttatacaaatatcattt 12191961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 19695700 - 19695748
Alignment:
Q  104 tgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||||| |||||||||| | | || |||||||||||||||||    
T  19695700 tgaatataagagagaaagttgtcaaaaagtgattgtacaaatatcattt 19695748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 25801830 - 25801870
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||||| | | ||||||||||||||||||||    
T  25801830 agagataaagttgtcacaaattggttgtacaaatatcattt 25801870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 45202141 - 45202189
Alignment:
Q  104 tgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||| ||||| |||||||| | | ||||||||||||||||||||||    
T  45202141 tgaatatgagagagaaagttgtaaaaaaatggttgtacaaatatcattt 45202189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 30580202 - 30580136
Alignment:
Q  86 aaaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||| ||||||||||| |||| ||| | |||||||||||||||| |||||||||| |||||||||||    
T  30580202 aaaagtaaaaacataatatgagtatgaaagataaagttgtcataaaatggttgtataaatatcattt 30580136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 50280121 - 50280155
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||||||||||||||||||||||||    
T  50280121 aaagttgtcatagaatggttgtacaaatatcattt 50280155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 28700536 - 28700475
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||  ||| ||| |||||||||||||||| | ||||||||| ||||||||||||    
T  28700536 taaaaacataatgtgagtatgagagataaagttgtcaaaaaatggttgttcaaatatcattt 28700475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 50876354 - 50876419
Alignment:
Q  87 aaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||||||| |||| ||| | ||| |||||||||| | ||| ||||||||||||||||||    
T  50876354 aaaataaaaacataatatgagtatgatagagaaagttgtcaaaaaattgttgtacaaatatcattt 50876419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 19418191 - 19418225
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  19418191 aaagttgtcataaaatggttgtacaaatatcattt 19418225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 43883370 - 43883316
Alignment:
Q  98 ataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||| |||||||||| ||| ||| |||||| | ||||||||||||||||||||||    
T  43883370 ataatatgaatataaaagagaaaattgtcaaaaaatggttgtacaaatatcattt 43883316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 50652425 - 50652391
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  50652425 aaagttgtcataaaatggttgtacaaatatcattt 50652391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 88
Target Start/End: Original strand, 46965988 - 46966053
Alignment:
Q  23 gaggtgtattattcgtacaaccatttatatgacaacttttcgaacaactgtaaatttacaaagaaa 88  Q
    ||||||| ||||| | |||||||||| | ||||||||||||| ||||   ||||||||||||||||    
T  46965988 gaggtgtgttatttgaacaaccatttgtgtgacaacttttcggacaatcataaatttacaaagaaa 46966053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 53871028 - 53871089
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||| ||  ||||||| ||||| ||| |||||||| ||||||||| ||||||||||||    
T  53871028 taaaaacaaaatgtgaatatgagagagaaaattgtcataaaatggttgttcaaatatcattt 53871089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 55361229 - 55361290
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||| ||||  ||| ||||||||| ||||||||||   ||||||||||||||||||||||    
T  55361229 taaaaaaataatgtgagtataagagagaaagttgtcaagaaatggttgtacaaatatcattt 55361290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 43169770 - 43169810
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  43169770 agagaaaaagttgtcacaaaatggttgtacaaatatcattt 43169810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 47683844 - 47683804
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  47683844 agagagaaagttgtcacaaaatggttgtacaaatatcattt 47683804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 3180012 - 3180060
Alignment:
Q  104 tgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||||||||||||| | |||| |||||||||||||||||    
T  3180012 tgaatataagagataaagttgtcaaaaaatgattgtacaaatatcattt 3180060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 152
Target Start/End: Original strand, 16328713 - 16328758
Alignment:
Q  107 atataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||| |||||||||||||| ||| ||||||||||||||||||||||    
T  16328713 atatgagagataaagttgttataaaatggttgtacaaatatcattt 16328758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 29465654 - 29465732
Alignment:
Q  14 tttttaaatgaggtgtattattcgtacaaccatttatatgacaacttttcgaacaactgtaaatttacaaagaaaaata 92  Q
    ||||| || ||| ||||||||| | |||||||||||  |||||||||||   |||||| |||||||||||||| |||||    
T  29465654 tttttgaaggagatgtattatttgaacaaccatttaagtgacaacttttatgacaactataaatttacaaagacaaata 29465732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 29173027 - 29172987
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcatttaacttt 158  Q
    |||||| ||||| ||||||||||||||||||||||| ||||    
T  29173027 aaagttatcataaaatggttgtacaaatatcatttatcttt 29172987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 47386818 - 47386862
Alignment:
Q  108 tataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||    
T  47386818 tataagagataaagttgttataaaatggttgtacaaatatcattt 47386862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 27687513 - 27687576
Alignment:
Q  89 aataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||| ||||  ||| ||| |||||||||||||||| | ||||||||||||||||||||||    
T  27687513 aataaaaatataatgtgagtatgagagataaagttgtcacaaaatggttgtacaaatatcattt 27687576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 40139192 - 40139129
Alignment:
Q  89 aataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||| ||||  ||| ||| ||||| |||||||||||| ||||||||||||||||||||||    
T  40139192 aataaaaatataatgtgagtatgagagagaaagttgtcataaaatggttgtacaaatatcattt 40139129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 43612097 - 43612137
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  43612097 agagagaaagttgtcataaaatggttgtacaaatatcattt 43612137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 47059899 - 47059947
Alignment:
Q  104 tgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||| ||||||||||||| | | ||||||||||||||||||||||    
T  47059899 tgaatatatgagataaagttgttaaaaaatggttgtacaaatatcattt 47059947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 94
Target Start/End: Original strand, 43367805 - 43367860
Alignment:
Q  39 acaaccatttatatgacaacttttcgaacaactgtaaatttacaaagaaaaataaa 94  Q
    |||| ||||| | ||||||||||| |||||||  ||||||||||||||||||||||    
T  43367805 acaatcatttgtgtgacaacttttagaacaaccataaatttacaaagaaaaataaa 43367860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 11947832 - 11947798
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  11947832 aaagttgtcataaaatggttgtacaaatatcattt 11947798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 31184318 - 31184284
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  31184318 aaagttgtcataaaatggttgtacaaatatcattt 31184284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 1690510 - 1690449
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||  |||| ||| ||||| |||||||||| | ||||||||||||||||| ||||    
T  1690510 taaaaacatattatgagtatgagagaaaaagttgtcacaaaatggttgtacaaatattattt 1690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 14983848 - 14983787
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||  ||||||| ||||| |||||||| | | | ||||||||||||||||||||    
T  14983848 taaaaacataatgtgaatatgagagagaaagttgttaaaaagtggttgtacaaatatcattt 14983787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 16836111 - 16836172
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||  ||| ||| ||||| |||||||||| | |||| |||||||||||||||||    
T  16836111 taaaaacataatgtgagtatgagagaaaaagttgtcacaaaatgattgtacaaatatcattt 16836172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 41507194 - 41507251
Alignment:
Q  95 aacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||  ||| ||| ||||| |||||||||| | ||||||||||||||||||||||    
T  41507194 aacataatgtgagtatgagagagaaagttgtcacaaaatggttgtacaaatatcattt 41507251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 31433569 - 31433505
Alignment:
Q  88 aaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||||||  ||| ||| ||||| ||| ||||| || ||||||||||||||||| ||||    
T  31433569 aaataaaaacataatgtgagtatgagagaaaaaattgtcgtaaaatggttgtacaaatataattt 31433505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 39380853 - 39380893
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcatttaacttt 158  Q
    |||||||||||| |||||||||| |||||||||||| ||||    
T  39380853 aaagttgtcataaaatggttgtataaatatcatttatcttt 39380893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 40596071 - 40596111
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  40596071 agagagaaagttgtcacaaaatggttgtacaaatatcattt 40596111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 42539461 - 42539421
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  42539461 agagagaaagttgtcacataatggttgtacaaatatcattt 42539421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 48872045 - 48872085
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  48872045 agagagaaagttgtcaaaaaatggttgtacaaatatcattt 48872085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 51571466 - 51571418
Alignment:
Q  104 tgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||| ||||| |||||||||| | | ||||||||||||||||||||    
T  51571466 tgaatatgagagagaaagttgtcaaaaagtggttgtacaaatatcattt 51571418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 27384253 - 27384190
Alignment:
Q  89 aataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| || |||| |||||||| ||||| |||||||| ||| ||||||||||||||||||||||    
T  27384253 aataagaatataatatgaatatgagagagaaagttgtaataaaatggttgtacaaatatcattt 27384190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 32365676 - 32365724
Alignment:
Q  104 tgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||| ||||| |||||||||| | ||||||||||||||||||||||    
T  32365676 tgaatatgagagagaaagttgtcacaaaatggttgtacaaatatcattt 32365724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 54036546 - 54036586
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  54036546 agagataaagttgtcacaaaatggttgtacaaatatcattt 54036586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 29973042 - 29973105
Alignment:
Q  89 aataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| ||||||| | |||||||| | |||||||||||| | ||| ||||||||||||||||||    
T  29973042 aataataacataaaaggaatataaaaaataaagttgtcacaaaattgttgtacaaatatcattt 29973105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 3475906 - 3475872
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  3475906 aaagttgtcataaaatggttgtacaaatatcattt 3475872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 11012178 - 11012144
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  11012178 aaagttgtcataaaatggttgtacaaatatcattt 11012144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 24088598 - 24088632
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  24088598 aaagttgtcataaaatggttgtacaaatatcattt 24088632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 17683411 - 17683362
Alignment:
Q  103 atgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||| ||| |||||||||||||||||| ||||| ||| ||||||||||||    
T  17683411 atgagtatgagagataaagttgtcataaaatggatgttcaaatatcattt 17683362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 42490984 - 42490923
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||  ||| ||| ||||| |||||||||| | | ||||||||||||||||||||    
T  42490984 taaaaacataatgtgagtatgagagagaaagttgtcaaaaagtggttgtacaaatatcattt 42490923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 4511868 - 4511828
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||||| ||||||| ||||||||||||||    
T  4511868 agagagaaagttgtcataaaatggttatacaaatatcattt 4511828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 114 - 152
Target Start/End: Complemental strand, 9065472 - 9065434
Alignment:
Q  114 agataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  9065472 agataaagttgtcataaaatggttgtacaaatatcattt 9065434  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 12878825 - 12878759
Alignment:
Q  86 aaaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| ||||| |||| |||||||| ||||| |||||| | ||| ||||||||||||||||||||||    
T  12878825 aaaaaaaaaaaaataatatgaatatgagagagaaagttataataaaatggttgtacaaatatcattt 12878759  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 4098674 - 4098625
Alignment:
Q  104 tgaatataagagataaagttgtcatagaatggttgtacaaatatcattta 153  Q
    ||||||| |||||||||||||||| | ||| |||||||||||||||||||    
T  4098674 tgaatatgagagataaagttgtcacaaaatagttgtacaaatatcattta 4098625  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 14647595 - 14647565
Alignment:
Q  122 ttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||||||||||||||||||||||    
T  14647595 ttgtcatagaatggttgtacaaatatcattt 14647565  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 24405846 - 24405912
Alignment:
Q  26 gtgtattattcgtacaaccatttatatgacaacttttcgaacaactgtaaatttacaaagaaaaata 92  Q
    |||| ||||| | ||||| |||| | |||||||||||  ||||||| ||||||||||||||||||||    
T  24405846 gtgtgttatttgaacaactatttgtttgacaacttttgaaacaactataaatttacaaagaaaaata 24405912  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 19952075 - 19952014
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||| |||| ||| ||||| ||| |||||| | ||||||| ||||||||||||||    
T  19952075 taaaaacataatatgagtatgagagacaaatttgtcacaaaatggttttacaaatatcattt 19952014  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 33599147 - 33599078
Alignment:
Q  21 atgaggtgtattattcgtacaaccatttatatgacaacttttcgaacaactgtaaatttacaaagaaaaa 90  Q
    ||||| || |||||| | |||||||||||||||| || ||||   |||||| ||||||||||||||||||    
T  33599147 atgagttgcattatttgaacaaccatttatatgataatttttatgacaactataaatttacaaagaaaaa 33599078  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 152
Target Start/End: Original strand, 34080297 - 34080358
Alignment:
Q  91 taaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||| || ||||| ||||| ||| |||||||| |||| ||||| |||||||||||    
T  34080297 taaaaacataatataaatatgagagacaaaattgtcataaaatgattgtataaatatcattt 34080358  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 8897416 - 8897372
Alignment:
Q  121 gttgtcatagaatggttgtacaaatatcatttaacttttcaaaat 165  Q
    ||||||||| ||||||||||||||||||||||  || ||||||||    
T  8897416 gttgtcataaaatggttgtacaaatatcatttctctattcaaaat 8897372  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 13734377 - 13734417
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||||| | ||||||||||||||||||||    
T  13734377 agagagaaagttgtcataaagtggttgtacaaatatcattt 13734417  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 14206443 - 14206403
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  14206443 agagagaaagttgtcaaaaaatggttgtacaaatatcattt 14206403  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 152
Target Start/End: Complemental strand, 134033 - 133999
Alignment:
Q  118 aaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||||| ||||||||||||||||||||||    
T  134033 aaagttgtcatataatggttgtacaaatatcattt 133999  T

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Target: scaffold0257 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 24049 - 23984
Alignment:
Q  87 aaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||| || ||  |||| |||| |||||||||| ||||| ||||||||| ||||||||||||    
T  24049 aaaataaaaccacaatgtgaacataatagataaagttatcataaaatggttgttcaaatatcattt 23984  T

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Target: scaffold0087 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 24530 - 24595
Alignment:
Q  87 aaaataaaaacataagatgaatataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    |||||||||| ||||  | ||||||||||||||||||| || | ||| ||||| ||||||||||||    
T  24530 aaaataaaaatataatctaaatataagagataaagttgacaaaaaatagttgttcaaatatcattt 24595  T

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Target: scaffold0504 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 11205 - 11161
Alignment:
Q  108 tataagagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||||||||||||||||   | ||||||||||||||||||||||    
T  11205 tataagagataaagttgttcaaaaatggttgtacaaatatcattt 11161  T

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Target: scaffold0054 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 31617 - 31657
Alignment:
Q  112 agagataaagttgtcatagaatggttgtacaaatatcattt 152  Q
    ||||| |||||||||| | ||||||||||||||||||||||    
T  31617 agagagaaagttgtcaaaaaatggttgtacaaatatcattt 31657  T

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