View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20519_high_18 (Length: 406)

Name: NF20519_high_18
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20519_high_18
NF20519_high_18
[»] chr7 (18 HSPs)
chr7 (211-314)||(1907495-1907598)
chr7 (312-397)||(1907249-1907334)
chr7 (85-160)||(1907649-1907724)
chr7 (264-344)||(8595525-8595604)
chr7 (265-376)||(18070075-18070184)
chr7 (265-339)||(15889623-15889696)
chr7 (281-378)||(8826121-8826217)
chr7 (92-159)||(27053554-27053622)
chr7 (83-159)||(41188847-41188924)
chr7 (87-160)||(16082492-16082566)
chr7 (83-160)||(32204153-32204231)
chr7 (110-156)||(42552535-42552581)
chr7 (114-159)||(31626102-31626147)
chr7 (81-160)||(6548499-6548579)
chr7 (111-159)||(8258699-8258747)
chr7 (92-159)||(8380421-8380489)
chr7 (92-159)||(42222201-42222269)
chr7 (92-155)||(49069535-49069599)
[»] scaffold0004 (2 HSPs)
scaffold0004 (265-376)||(354648-354758)
scaffold0004 (264-397)||(113659-113790)
[»] chr3 (17 HSPs)
chr3 (264-375)||(39924739-39924849)
chr3 (258-397)||(3276679-3276815)
chr3 (258-344)||(5027806-5027891)
chr3 (258-347)||(3273318-3273405)
chr3 (93-160)||(45899604-45899672)
chr3 (86-160)||(11675287-11675362)
chr3 (87-160)||(34060826-34060900)
chr3 (92-159)||(32415549-32415617)
chr3 (85-158)||(21324489-21324563)
chr3 (119-160)||(18847-18888)
chr3 (119-160)||(18988-19029)
chr3 (110-155)||(52570781-52570826)
chr3 (92-159)||(8847513-8847581)
chr3 (92-159)||(12051018-12051086)
chr3 (92-159)||(36730214-36730282)
chr3 (115-159)||(37509115-37509159)
chr3 (92-159)||(46317466-46317534)
[»] scaffold0047 (1 HSPs)
scaffold0047 (264-377)||(8295-8407)
[»] chr5 (11 HSPs)
chr5 (264-376)||(14405486-14405597)
chr5 (92-159)||(12914155-12914223)
chr5 (261-314)||(40667332-40667384)
chr5 (112-159)||(338825-338872)
chr5 (112-159)||(39567904-39567951)
chr5 (112-159)||(43414125-43414172)
chr5 (107-157)||(16899635-16899685)
chr5 (111-160)||(39335473-39335522)
chr5 (85-160)||(19894791-19894867)
chr5 (92-159)||(35653316-35653384)
chr5 (92-159)||(39167576-39167644)
[»] scaffold0303 (1 HSPs)
scaffold0303 (258-344)||(20414-20499)
[»] chr6 (6 HSPs)
chr6 (264-343)||(12351423-12351501)
chr6 (258-344)||(14860611-14860695)
chr6 (261-375)||(18675800-18675912)
chr6 (86-160)||(31220387-31220462)
chr6 (83-159)||(6507450-6507527)
chr6 (92-159)||(16437643-16437711)
[»] chr1 (15 HSPs)
chr1 (258-376)||(16850451-16850567)
chr1 (272-344)||(21197541-21197612)
chr1 (86-159)||(40920159-40920233)
chr1 (80-160)||(51424125-51424206)
chr1 (112-159)||(41147536-41147583)
chr1 (87-160)||(17402923-17402997)
chr1 (113-159)||(40845253-40845299)
chr1 (92-160)||(14331817-14331886)
chr1 (83-159)||(22346295-22346372)
chr1 (92-160)||(44359729-44359798)
chr1 (122-159)||(46296243-46296280)
chr1 (92-159)||(11385961-11386029)
chr1 (92-159)||(28277540-28277608)
chr1 (92-159)||(43433755-43433823)
chr1 (115-159)||(50295491-50295535)
[»] chr4 (16 HSPs)
chr4 (70-160)||(52341558-52341650)
chr4 (87-160)||(35675250-35675324)
chr4 (87-158)||(39158388-39158460)
chr4 (86-160)||(966556-966631)
chr4 (83-159)||(23765549-23765626)
chr4 (92-159)||(30475405-30475473)
chr4 (81-160)||(30617918-30617998)
chr4 (92-159)||(34316784-34316852)
chr4 (112-159)||(19328989-19329036)
chr4 (112-159)||(31754939-31754986)
chr4 (80-141)||(29462769-29462831)
chr4 (92-160)||(15986246-15986315)
chr4 (83-159)||(35808457-35808534)
chr4 (83-159)||(40436052-40436129)
chr4 (112-160)||(34016626-34016674)
chr4 (92-159)||(50514674-50514742)
[»] scaffold0031 (1 HSPs)
scaffold0031 (261-344)||(90036-90117)
[»] scaffold0097 (1 HSPs)
scaffold0097 (264-344)||(32027-32106)
[»] scaffold0882 (1 HSPs)
scaffold0882 (264-375)||(1164-1273)
[»] scaffold0766 (1 HSPs)
scaffold0766 (264-375)||(2130-2239)
[»] chr8 (7 HSPs)
chr8 (87-151)||(5300198-5300263)
chr8 (92-159)||(45337984-45338052)
chr8 (112-159)||(25249402-25249449)
chr8 (110-157)||(30351590-30351637)
chr8 (111-160)||(37922989-37923038)
chr8 (92-159)||(10694787-10694855)
chr8 (92-159)||(19389371-19389439)
[»] chr2 (9 HSPs)
chr2 (78-160)||(11659228-11659311)
chr2 (86-160)||(2239556-2239631)
chr2 (90-139)||(41890192-41890242)
chr2 (80-160)||(2136404-2136485)
chr2 (266-375)||(4183332-4183440)
chr2 (119-160)||(12695298-12695339)
chr2 (92-159)||(6999182-6999250)
chr2 (92-159)||(11445380-11445448)
chr2 (111-159)||(27495123-27495171)
[»] scaffold0062 (3 HSPs)
scaffold0062 (92-155)||(16836-16900)
scaffold0062 (92-155)||(27004-27068)
scaffold0062 (92-155)||(37170-37234)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 211 - 314
Target Start/End: Complemental strand, 1907598 - 1907495
Alignment:
Q  211 ccaatgcctcaagagcactctttaacatttccgataaaaataataacaaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgt 310  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1907598 ccaatgtctcaagagcactctttagcatttccgataaaaataataacaaaactcaggacttgaaagcttgaatcttcttttccactttttgcattgttgt 1907499  T
Q  311 tctt 314  Q
    ||||    
T  1907498 tctt 1907495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 312 - 397
Target Start/End: Complemental strand, 1907334 - 1907249
Alignment:
Q  312 cttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagacatatatgcacattctctctcctttttgatgatg 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1907334 cttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagacatatatgcacattctctcccctttttgatgatg 1907249  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 1907724 - 1907649
Alignment:
Q  85 gacacttgttaaggaaaccaaatgtatatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1907724 gacacttgttaaggaaaccaaatgtatatgtttgcattgcattcaacaatattttgattattaaaaaattaaattc 1907649  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 8595525 - 8595604
Alignment:
Q  264 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 344  Q
    ||||||||||| |||||||||||||||||| ||||||||||| ||| |||| ||||||||| |||||||||||||||||||    
T  8595525 caagacttgaaggcttgaatcttcttttccgctttttgcatttttgatcttctaggacttc-ttttgtcaatcatcaaaac 8595604  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 376
Target Start/End: Original strand, 18070075 - 18070184
Alignment:
Q  265 aagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagac 364  Q
    ||||||||| ||||||||| ||||||||| | |||| |||  |||||||| ||||||||||||| ||||||||||||||| ||| |||| ||  |||| |    
T  18070075 aagacttgatagcttgaat-ttcttttccgccttttacatctttgttcttctaggacttctttt-gtcaatcatcaaaaccaaagtattcctatcaaggc 18070172  T
Q  365 atatatgcacat 376  Q
    |||||| |||||    
T  18070173 atatattcacat 18070184  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 15889696 - 15889623
Alignment:
Q  265 aagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatc 339  Q
    |||||| |||||| ||||||||||||||| ||||||||||  |||||| | ||||||||| ||||||||||||||    
T  15889696 aagactagaaagcctgaatcttcttttccgctttttgcatctttgttcatctaggacttc-ttttgtcaatcatc 15889623  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 378
Target Start/End: Complemental strand, 8826217 - 8826121
Alignment:
Q  281 aatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagacatatatgcacattc 378  Q
    |||||||||||| |||||||||||| || ||||| ||| ||||| ||||||||||||||||||| ||  |||| ||  |||| ||||||| |||||||    
T  8826217 aatcttcttttctactttttgcattatttttcttctagcacttc-ttttgtcaatcatcaaaaccaatgtattcctgtcaaggcatatattcacattc 8826121  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 27053622 - 27053554
Alignment:
Q  92 gttaaggaaaccaaatgtata-tgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||||| ||| | |||||||||||  |||||||||||||||| | |||||||||||||||    
T  27053622 gttaaggaaaccaaaagtagaatgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 27053554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 41188924 - 41188847
Alignment:
Q  83 aggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||| | ||||||||| ||||||||| |||||||||||||  |||||||  ||||||| | |||||||||||||||    
T  41188924 aggacaatggttaaggaagccaaatgtagtatgtttgcattgatttcaacagcattttgacttttaaaaagttaaatt 41188847  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 16082566 - 16082492
Alignment:
Q  87 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||||||||||| ||||| ||| ||||||||||||| |||||||||||  || | | |||||| |||||||||    
T  16082566 cacttgttaaggaatccaaaagtagtatgtttgcattggattcaacaataacttaacttttaaaacgttaaattc 16082492  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 32204153 - 32204231
Alignment:
Q  83 aggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||||||||||||||||| ||||  || ||  ||||||||| |||||| |||||||| | | ||||||||||||||||    
T  32204153 aggacacttgttaaggaaatcaaagatagtaaatttgcattgtattcaaaaatattttaacttttaaaaagttaaattc 32204231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 42552581 - 42552535
Alignment:
Q  110 atatgtttgcattgcattcaacaatattttgattattaaaaagttaa 156  Q
    |||||||||||||| ||| ||||||||||||| | ||||||||||||    
T  42552581 atatgtttgcattgaatttaacaatattttgacttttaaaaagttaa 42552535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 31626147 - 31626102
Alignment:
Q  114 gtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||  |||||||| ||||||||| |||||||||||||||    
T  31626147 gtttgcattggtttcaacaacattttgatttttaaaaagttaaatt 31626102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 6548499 - 6548579
Alignment:
Q  81 ttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||| |||||||||| | || |||| ||| || |||||||||| || |||||||||||| | | ||||||||||||||||    
T  6548499 ttagggcacttgttaaaggaatcaaaagtagtaagtttgcattggatccaacaatattttaacttttaaaaagttaaattc 6548579  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 8258747 - 8258699
Alignment:
Q  111 tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||||||||||  |||||||| ||| ||| |||||||||||||||||    
T  8258747 tatgtttgcattggtttcaacaaaattatgactattaaaaagttaaatt 8258699  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 8380421 - 8380489
Alignment:
Q  92 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| ||| ||||||| |||||  |||||||| ||||||| | |||||||||||||||    
T  8380421 gttaaggaagccaaaagtagtatgttttcattggtttcaacaacattttgacttttaaaaagttaaatt 8380489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 42222201 - 42222269
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||| ||| |||  ||||||| ||||  |||||||||||||||| | |||||||||||||||    
T  42222201 gttaaggaaactaaaagtaacatgtttgtattggtttcaacaatattttgacttttaaaaagttaaatt 42222269  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 49069535 - 49069599
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagtta 155  Q
    ||||||||||||||| |||  ||||||| ||||  ||||||||||| |||||| |||||||||||    
T  49069535 gttaaggaaaccaaaagtaacatgtttgtattggtttcaacaatatattgatttttaaaaagtta 49069599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 265 - 376
Target Start/End: Original strand, 354648 - 354758
Alignment:
Q  265 aagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagac 364  Q
    ||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| |||| ||  |||| |    
T  354648 aagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaactaaagtattcctgtcaaggc 354746  T
Q  365 atatatgcacat 376  Q
    |||||| |||||    
T  354747 atatattcacat 354758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 397
Target Start/End: Original strand, 113659 - 113790
Alignment:
Q  264 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 363  Q
    ||||||| |||||||||||||||||||||| |||||||||| | ||||||| |||||||||  ||||||||| |||||||||||| | || ||  ||||     
T  113659 caagactagaaagcttgaatcttcttttccgctttttgcatcgctgttcttctaggacttc-atttgtcaattatcaaaactaaagtgttcctgtcaagg 113757  T
Q  364 catatatgcacattctctctcctttttgatgatg 397  Q
    ||||||| ||||||||| | ||||||||||||||    
T  113758 catatattcacattctc-cccctttttgatgatg 113790  T

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Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 264 - 375
Target Start/End: Complemental strand, 39924849 - 39924739
Alignment:
Q  264 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 363  Q
    |||||||||||||||||||||||||||||| ||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| |||| ||  ||||     
T  39924849 caagacttgaaagcttgaatcttcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaactaaagtattcctgtcaagg 39924751  T
Q  364 catatatgcaca 375  Q
    ||||||| ||||    
T  39924750 catatattcaca 39924739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 397
Target Start/End: Complemental strand, 3276815 - 3276679
Alignment:
Q  258 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctc 357  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||  |||| ||     
T  3276815 aaaacccaagacttgataacttgaat-ttcttttccgctttttgcattgttgctcttctaggacttc-ttttgtcaatcatcaaaactaatgtattcctg 3276718  T
Q  358 gcaagacatatatgcacattctctctcctttttgatgatg 397  Q
     |||| ||||||| ||||||||| | ||||||||||||||    
T  3276717 tcaaggcatatattcacattctc-cccctttttgatgatg 3276679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 344
Target Start/End: Original strand, 5027806 - 5027891
Alignment:
Q  258 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 344  Q
    |||| |||||||| |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  5027806 aaaattcaagactagaaagcttgaatattcttttccgctttttgcatcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 5027891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 347
Target Start/End: Complemental strand, 3273405 - 3273318
Alignment:
Q  258 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaa 347  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||||| | || ||||||||| ||||||||||||||||||||||    
T  3273405 aaaacccaagacttgataacttgaat-ttcttttcctctttttgcattgttgcttttctaggacttc-ttttgtcaatcatcaaaactaa 3273318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 45899672 - 45899604
Alignment:
Q  93 ttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||||||||||| ||| ||||||| ||||| ||||||||||||||||| | ||||||| ||||||||    
T  45899672 ttaaggaaaccaaaagtagtatgtttacattgaattcaacaatattttgacttttaaaaatttaaattc 45899604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 11675287 - 11675362
Alignment:
Q  86 acacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||||||||||||||||||| ||  || ||| |||||| |||||||||||||||||   ||||||||||||||||    
T  11675287 acacttgttaaggaaaccaaaagtggtaggttagcattggattcaacaatattttgacatttaaaaagttaaattc 11675362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 34060900 - 34060826
Alignment:
Q  87 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||||||||||||  ||| ||| | ||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  34060900 cacttgttaaggaaattaaaagtagtttgtttgcattgaattcaacaatattttaacttttaaaaagttaaattc 34060826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 32415549 - 32415617
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  32415549 gttaaggaaaccaaaagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 32415617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 21324489 - 21324563
Alignment:
Q  85 gacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaat 158  Q
    |||||||||||| ||||| ||| ||| |||| |||||| | ||||||||||||||| | | ||||||||||||||    
T  21324489 gacacttgttaaagaaactaaaagtaatatgattgcatcggattcaacaatattttaacttttaaaaagttaaat 21324563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 18888 - 18847
Alignment:
Q  119 cattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||    
T  18888 cattggattcaacaatattttaatttttaaaaagttaaattc 18847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 19029 - 18988
Alignment:
Q  119 cattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||    
T  19029 cattggattcaacaatattttaatttttaaaaagttaaattc 18988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 52570781 - 52570826
Alignment:
Q  110 atatgtttgcattgcattcaacaatattttgattattaaaaagtta 155  Q
    ||||||||||||||  |||||||||||||||| | |||||||||||    
T  52570781 atatgtttgcattggtttcaacaatattttgacttttaaaaagtta 52570826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 8847581 - 8847513
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||||| |||  |||||| |||||  |||||||||||||| | | |||||||||||||||    
T  8847581 gttaaggaaaccaaaagtagcatgtttacattgttttcaacaatattttaacttttaaaaagttaaatt 8847513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 12051018 - 12051086
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||| ||| |||||||||||||||    
T  12051018 gttaaggaagccaaaagtagcatgtttgcattgttttcaacaacattttaatttttaaaaagttaaatt 12051086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 36730282 - 36730214
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  36730282 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 36730214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 37509115 - 37509159
Alignment:
Q  115 tttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||||||  |||||||||||||||| | |||||||||||||||    
T  37509115 tttgcattggtttcaacaatattttgacttttaaaaagttaaatt 37509159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 46317466 - 46317534
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  46317466 gttaaggaagccaaaagtaacatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 46317534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 8407 - 8295
Alignment:
Q  264 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 363  Q
    |||||||||||||||||||||||||||||  ||||||||||  |||||||| ||||||||| ||||||||||||||||||||||| |||| ||  ||||     
T  8407 caagacttgaaagcttgaatcttcttttcggctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaactaaagtattcctgtcaagg 8309  T
Q  364 catatatgcacatt 377  Q
    ||||||| ||||||    
T  8308 catatattcacatt 8295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 14405486 - 14405597
Alignment:
Q  264 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 363  Q
    |||||||||||||||||||||||||||||| ||||||| ||  |||||||| ||||| ||| ||||||||||||||||||||||| |||| ||  ||||     
T  14405486 caagacttgaaagcttgaatcttcttttccgctttttgtatctttgttcttctaggatttc-ttttgtcaatcatcaaaactaaagtattcctgtcaagg 14405584  T
Q  364 catatatgcacat 376  Q
    ||||||| |||||    
T  14405585 catatattcacat 14405597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 12914155 - 12914223
Alignment:
Q  92 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| ||| |||||||||||||  |||||||||||||||||| ||||||| |||||||    
T  12914155 gttaaggaagccaaaagtagtatgtttgcattggtttcaacaatattttgatttttaaaaaattaaatt 12914223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 314
Target Start/End: Original strand, 40667332 - 40667384
Alignment:
Q  261 actcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttctt 314  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||  ||||||||    
T  40667332 actcaagacttgatagcttgaat-ttcttttccactttttgcatcattgttctt 40667384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 338872 - 338825
Alignment:
Q  112 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||||||||   |||||||||||||||||| |||||||||||||||    
T  338872 atgtttgcatttgtttcaacaatattttgatttttaaaaagttaaatt 338825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 39567904 - 39567951
Alignment:
Q  112 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||  ||||||||| |||||||| |||||||||||||||    
T  39567904 atgtttgcattggtttcaacaatgttttgatttttaaaaagttaaatt 39567951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 43414172 - 43414125
Alignment:
Q  112 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||  |||||||| ||||||||| |||||||||||||||    
T  43414172 atgtttgcattggtttcaacaacattttgatttttaaaaagttaaatt 43414125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 16899685 - 16899635
Alignment:
Q  107 tgtatatgtttgcattgcattcaacaatattttgattattaaaaagttaaa 157  Q
    |||||||||||| |||| ||||||||| ||||||| | |||||||||||||    
T  16899685 tgtatatgtttgtattggattcaacaacattttgacttttaaaaagttaaa 16899635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 39335473 - 39335522
Alignment:
Q  111 tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||||| |||| ||||||||| ||||||| | ||||||||||||||||    
T  39335473 tatgtttgtattggattcaacaacattttgacttttaaaaagttaaattc 39335522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 19894791 - 19894867
Alignment:
Q  85 gacacttgttaaggaaaccaaatgtatatg-tttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||| |||||||||| |||| ||||| | |||| |||| ||| ||||||||||| | | ||||||||||||||||    
T  19894791 gacactcgttaaggaaatcaaaagtataaggtttgaattggatttaacaatattttaacttttaaaaagttaaattc 19894867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 35653384 - 35653316
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||||| | |||||||||||||    
T  35653384 gttaaggaagccaaaagtaccatgtttgcattggtttcaacaacattttgattttcaaaaagttaaatt 35653316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 39167576 - 39167644
Alignment:
Q  92 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||| |||||||| ||| ||| ||| ||||| ||| |||||| |||||||| |||||||||||||||    
T  39167576 gttaagaaaaccaaaagtaatatatttacattgaatttaacaatgttttgatttttaaaaagttaaatt 39167644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 20499 - 20414
Alignment:
Q  258 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 344  Q
    |||| |||||||| |||||||||||| ||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  20499 aaaattcaagactagaaagcttgaatattcttttccgctttttgcatcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 20414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 264 - 343
Target Start/End: Complemental strand, 12351501 - 12351423
Alignment:
Q  264 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaa 343  Q
    |||||||||||||||| ||||||||||||| ||||||||||  |||||||| ||||||||| ||||||||||||||||||    
T  12351501 caagacttgaaagcttaaatcttcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaa 12351423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 344
Target Start/End: Complemental strand, 14860695 - 14860611
Alignment:
Q  258 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 344  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||| | ||||||||| ||||||||| |||||||||||||||||||    
T  14860695 aaaactcaagacttgatagcttgaat-ttcttttccgctttttgcttcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 14860611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 261 - 375
Target Start/End: Complemental strand, 18675912 - 18675800
Alignment:
Q  261 actcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgca 360  Q
    |||||||| |||| ||||||||| ||||||||| |||||||||| |||| |||| ||||||||| ||||||| ||||||||||| ||| |||| ||  ||    
T  18675912 actcaagatttgatagcttgaat-ttcttttccgctttttgcatcgttgctcttctaggacttc-ttttgtccatcatcaaaaccaaagtattcctgtca 18675815  T
Q  361 agacatatatgcaca 375  Q
    || ||||||| ||||    
T  18675814 aggcatatattcaca 18675800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 31220462 - 31220387
Alignment:
Q  86 acacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||| |||||||||||||| ||| ||||||||||||  |||||| || ||||| | | ||||||||||||||||    
T  31220462 acacttattaaggaaaccaaaagtagtatgtttgcattttattcaataacattttaacttttaaaaagttaaattc 31220387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 6507527 - 6507450
Alignment:
Q  83 aggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||| | |||||||||| |||| ||| ||| | | ||||| |||||||||| |||||||| |||||||||||||||    
T  6507527 aggacaatggttaaggaaatcaaaagtagtatatatacattgaattcaacaatgttttgatttttaaaaagttaaatt 6507450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 16437711 - 16437643
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||||  |||  ||||||||||||  |||||||||||||| | | |||||||||||||||    
T  16437711 gttaaggaaaccaacagtagcatgtttgcattggtttcaacaatatttttacttttaaaaagttaaatt 16437643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 258 - 376
Target Start/End: Complemental strand, 16850567 - 16850451
Alignment:
Q  258 aaaactcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctc 357  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||||||  |||| ||     
T  16850567 aaaacccaagacttgataacttgaat-ttcttttccgctttttgcattgttgctcttctaggacttc-ttttgtcaatcatcaaaactaatgtattcctg 16850470  T
Q  358 gcaagacatatatgcacat 376  Q
     |||| ||||||| |||||    
T  16850469 tcaaggcatatattcacat 16850451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 344
Target Start/End: Complemental strand, 21197612 - 21197541
Alignment:
Q  272 gaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 344  Q
    |||||||||||| ||||||||| ||||||||||  |||||||| ||||||||| |||||||||||||||||||    
T  21197612 gaaagcttgaatattcttttccgctttttgcatctttgttcttctaggacttc-ttttgtcaatcatcaaaac 21197541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 40920159 - 40920233
Alignment:
Q  86 acacttgttaaggaaaccaaatgtatatg-tttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||||||||||| |||   | ||||||||| ||||||||||||||| | | |||||||||||||||    
T  40920159 acacttgttaaggaaaccaaaagtagtggatttgcattggattcaacaatattttaacttttaaaaagttaaatt 40920233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 51424125 - 51424206
Alignment:
Q  80 cttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||| |||||||||||| ||||||||| ||| ||||||| ||||| |||||||||| |||| |   ||||||||||||||||    
T  51424125 cttatgacacttgttaaagaaaccaaaagtaatatgtttacattggattcaacaatgttttaacctttaaaaagttaaattc 51424206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 41147583 - 41147536
Alignment:
Q  112 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  41147583 atgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 41147536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 160
Target Start/End: Original strand, 17402923 - 17402997
Alignment:
Q  87 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||||||||| |||||||| ||| ||  ||| ||||  ||||||||||||||||| | ||||||||||||||||    
T  17402923 cacttgttaagaaaaccaaaagtagtagttttacattagattcaacaatattttgacttttaaaaagttaaattc 17402997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 40845253 - 40845299
Alignment:
Q  113 tgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||| |||  |||||||||||||||||| |||||||||||||||    
T  40845253 tgtttgctttggtttcaacaatattttgatttttaaaaagttaaatt 40845299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 14331817 - 14331886
Alignment:
Q  92 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||||||||||||  || ||| ||| ||||| |||||||||| |||||| | ||||||||||||||||    
T  14331817 gttaaggaaaccaaaaatagtatatttacattgaattcaacaatgttttgacttttaaaaagttaaattc 14331886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 22346372 - 22346295
Alignment:
Q  83 aggacacttgttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||| | ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | ||||||| |||||||    
T  22346372 aggacaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaaattaaatt 22346295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 44359798 - 44359729
Alignment:
Q  92 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||||||||||||  || ||| ||| ||||| |||||||||| |||||| | ||||||||||||||||    
T  44359798 gttaaggaaaccaaaaatagtatatttacattgaattcaacaatgttttgacttttaaaaagttaaattc 44359729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 46296280 - 46296243
Alignment:
Q  122 tgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||||||||||||||||| | |||||||||||||||    
T  46296280 tgcattcaacaatattttgacttttaaaaagttaaatt 46296243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 11385961 - 11386029
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||| |||||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  11385961 gttaagaaaaccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 11386029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 28277608 - 28277540
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||||||| |||| |||  ||||||||||||  |||||||| ||||| ||| |||||||||||||||    
T  28277608 gttaaggaaatcaaaagtaacatgtttgcattgttttcaacaacattttaatttttaaaaagttaaatt 28277540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 43433755 - 43433823
Alignment:
Q  92 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| ||| |||||||| ||||  |||||||| ||||| ||| |||||||||||||||    
T  43433755 gttaaggaagccaaaagtagtatgtttgtattggtttcaacaacattttaatttttaaaaagttaaatt 43433823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 50295535 - 50295491
Alignment:
Q  115 tttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||||||  |||||||||||||||| | |||||||||||||||    
T  50295535 tttgcattgatttcaacaatattttgacttttaaaaagttaaatt 50295491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 52341558 - 52341650
Alignment:
Q  70 taacaagtttcttag-gacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||||||||||||  ||||||||||||||||||||||  || ||||||||||||| ||||||||| ||||||| | ||||||||||||||||    
T  52341558 taacaagtttcttaaagacacttgttaaggaaaccaaaattagtatgtttgcattggattcaacaacattttgacttttaaaaagttaaattc 52341650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 160
Target Start/End: Complemental strand, 35675324 - 35675250
Alignment:
Q  87 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||||||||| ||| |||| ||| ||||||||||||| ||||||||||||||| | | ||||||||||||||||    
T  35675324 cacttgttaagaaaatcaaaagtagtatgtttgcattgaattcaacaatattttaacttttaaaaagttaaattc 35675250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 39158460 - 39158388
Alignment:
Q  87 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaat 158  Q
    ||||||||||||||| |||| ||| ||||||| ||||| ||| ||||||||||| ||| ||||||||||||||    
T  39158460 cacttgttaaggaaatcaaaagtagtatgtttacattgaattgaacaatattttaatttttaaaaagttaaat 39158388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 966556 - 966631
Alignment:
Q  86 acacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||||||||||||| |||| ||| ||  ||| ||||| ||||||||||||||| ||| ||||||||||||||||    
T  966556 acacttgttaaggaaatcaaaagtagtagtttttcattggattcaacaatattttaatttttaaaaagttaaattc 966631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 23765549 - 23765626
Alignment:
Q  83 aggacacttgttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||| ||||||||||| | ||| |||  ||||||||||||  |||||||| ||||||||| |||||||||||||||    
T  23765549 aggacaattgttaaggaagctaaaagtagcatgtttgcattggtttcaacaacattttgatttttaaaaagttaaatt 23765626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 30475405 - 30475473
Alignment:
Q  92 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| ||| |||||||||||||  ||||||||||||||||   |||||||||||||||    
T  30475405 gttaaggaagccaaaagtaatatgtttgcattggtttcaacaatattttgacatttaaaaagttaaatt 30475473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 30617918 - 30617998
Alignment:
Q  81 ttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||| ||||| |||||||||||||| ||| || | |||||||| ||||||||||||||  | | ||||||||||||||||    
T  30617918 ttagggcacttattaaggaaaccaaaagtagtaggattgcattggattcaacaatatttgaacttttaaaaagttaaattc 30617998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 34316852 - 34316784
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  34316852 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 34316784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 19329036 - 19328989
Alignment:
Q  112 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  19329036 atgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 19328989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Original strand, 31754939 - 31754986
Alignment:
Q  112 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  31754939 atgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 31754986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 29462769 - 29462831
Alignment:
Q  80 cttaggacacttgttaaggaaa-ccaaatgtatatgtttgcattgcattcaacaatattttga 141  Q
    |||||||||||||||||||||| | ||||  |||||||| ||||| ||||||||| |||||||    
T  29462769 cttaggacacttgttaaggaaatcgaaattaatatgtttacattggattcaacaacattttga 29462831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 15986246 - 15986315
Alignment:
Q  92 gttaaggaaaccaaatgtata-tgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||||||||| ||| ||| | ||||||||||| ||||||||||||| ||| | ||||||| ||||||||    
T  15986246 gttaaggaaactaaaagtagaatgtttgcattgaattcaacaatattctgacttttaaaaatttaaattc 15986315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 35808534 - 35808457
Alignment:
Q  83 aggacacttgttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||| | ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  35808534 aggacaatggttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 35808457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 40436052 - 40436129
Alignment:
Q  83 aggacacttgttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||| | |||||| |||||||| |||  |||||||| |||  |||||||||||||||||  |||||||||||||||    
T  40436052 aggacaatggttaagaaaaccaaaagtagcatgtttgctttggtttcaacaatattttgatatttaaaaagttaaatt 40436129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 34016626 - 34016674
Alignment:
Q  112 atgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||||||||||  |||||||| ||||||| | ||||||||||||||||    
T  34016626 atgtttgcattgatttcaacaacattttgacttttaaaaagttaaattc 34016674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 50514742 - 50514674
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||||| |||  ||||||||||||  |||||||| ||||| | | |||||||||||||||    
T  50514742 gttaaggaaaccaaaagtagcatgtttgcattggtttcaacaacattttaacttttaaaaagttaaatt 50514674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 90036 - 90117
Alignment:
Q  261 actcaagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 344  Q
    ||||||||||||| || |||||| ||||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  90036 actcaagacttgatagtttgaat-ttcttttccgctttttgcatcgttgttcttctaggacttc-ttttgtcaatcatcaaaac 90117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 344
Target Start/End: Original strand, 32027 - 32106
Alignment:
Q  264 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaac 344  Q
    ||||||| |||||||||||| ||||||||| |||| ||||| ||||||||| |||||||||  ||||||||||||||||||    
T  32027 caagactagaaagcttgaatattcttttccgctttatgcatcgttgttcttctaggacttc-atttgtcaatcatcaaaac 32106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0882 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 375
Target Start/End: Original strand, 1164 - 1273
Alignment:
Q  264 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 363  Q
    |||||||||| ||||||||| ||||||||| |||||||||| |||| || | ||||||||| ||||||| ||||||||||| ||| |||| ||  ||||     
T  1164 caagacttgatagcttgaat-ttcttttccgctttttgcatcgttgctcgtctaggacttc-ttttgtccatcatcaaaaccaaagtattcctgtcaagg 1261  T
Q  364 catatatgcaca 375  Q
    ||||||| ||||    
T  1262 catatattcaca 1273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 375
Target Start/End: Complemental strand, 2239 - 2130
Alignment:
Q  264 caagacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaaga 363  Q
    |||||||||| ||||||||| ||||||||| |||||||||| |||| || | ||||||||| ||||||| ||||||||||| ||| |||| ||  ||||     
T  2239 caagacttgatagcttgaat-ttcttttccgctttttgcatcgttgctcgtctaggacttc-ttttgtccatcatcaaaaccaaagtattcctgtcaagg 2142  T
Q  364 catatatgcaca 375  Q
    ||||||| ||||    
T  2141 catatattcaca 2130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 87 - 151
Target Start/End: Original strand, 5300198 - 5300263
Alignment:
Q  87 cacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaa 151  Q
    |||||||||||||||||||| ||| || |||||||||| ||||||||||||||||| | |||||||    
T  5300198 cacttgttaaggaaaccaaaagtagtaagtttgcattgaattcaacaatattttgacttttaaaaa 5300263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 45337984 - 45338052
Alignment:
Q  92 gttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||||| ||| |||||||||||||   |||| || ||||||||| |||||||||||||||    
T  45337984 gttaaggaaaccaaaagtagtatgtttgcattggtctcaataacattttgatttttaaaaagttaaatt 45338052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 25249449 - 25249402
Alignment:
Q  112 atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||  |||||||||||||||| | |||||||||||||||    
T  25249449 atgtttgcattggtttcaacaatattttgacttttaaaaagttaaatt 25249402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 30351590 - 30351637
Alignment:
Q  110 atatgtttgcattgcattcaacaatattttgattattaaaaagttaaa 157  Q
    |||||||||||||| ||||||||||||||| | | |||||||||||||    
T  30351590 atatgtttgcattggattcaacaatattttaacttttaaaaagttaaa 30351637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 37923038 - 37922989
Alignment:
Q  111 tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||||||||||| |||||| |||||||||| |  |||||||||||||||    
T  37923038 tatgtttgcattggattcaataatattttgacttctaaaaagttaaattc 37922989  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 10694787 - 10694855
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| |||| || |||||||||  |||||||| ||||||| | |||||||||||||||    
T  10694787 gttaaggaagccaaaagtatcatatttgcattgatttcaacaacattttgacttttaaaaagttaaatt 10694855  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 19389439 - 19389371
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||||||| |||| |||  ||||||||||||  |||||| ||||||||| | |||||||||||||||    
T  19389439 gttaaggaaatcaaaagtagcatgtttgcattgttttcaacgatattttgacttttaaaaagttaaatt 19389371  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 11659228 - 11659311
Alignment:
Q  78 ttcttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||||| || | ||||||||||||||| | | ||| ||| ||||| ||||||||||||||| ||| ||||||||||||||||    
T  11659228 ttcttagggcaatggttaaggaaaccaaaagcagtatatttacattgaattcaacaatattttaatttttaaaaagttaaattc 11659311  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 2239556 - 2239631
Alignment:
Q  86 acacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||||||||| | |||||| ||| ||| |||| |||| ||||||||||||||| | | ||||||||||||||||    
T  2239556 acacttgttaagaataccaaaagtagtatatttgtattggattcaacaatattttaacttttaaaaagttaaattc 2239631  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 41890242 - 41890192
Alignment:
Q  90 ttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatatttt 139  Q
    ||||||||||||||||| ||| || |||||||||| |||||||||||||||    
T  41890242 ttgttaaggaaaccaaaagtagtaggtttgcattggattcaacaatatttt 41890192  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 160
Target Start/End: Original strand, 2136404 - 2136485
Alignment:
Q  80 cttaggacacttgttaaggaaaccaaatgta-tatgtttgcattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    |||||| ||||||||||||||||||||  || || ||||| |||| ||||||||||||||| | | || |||||| ||||||    
T  2136404 cttagggcacttgttaaggaaaccaaaattagtaggtttgtattgtattcaacaatattttcacttttcaaaagtcaaattc 2136485  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 375
Target Start/End: Original strand, 4183332 - 4183440
Alignment:
Q  266 agacttgaaagcttgaatcttcttttccactttttgcattgttgttcttgtaggacttctttttgtcaatcatcaaaactaaaatatttctcgcaagaca 365  Q
    |||||| ||| ||||||| |||||||||  |||| ||| ||||||||||||| || ||| ||||||  ||||||||||  ||||||| |||  || ||||    
T  4183332 agacttaaaaacttgaatattcttttccctttttggcactgttgttcttgtaagatttc-ttttgttgatcatcaaaataaaaatatgtctgtcaggaca 4183430  T
Q  366 tatatgcaca 375  Q
    ||||| ||||    
T  4183431 tatattcaca 4183440  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 160
Target Start/End: Complemental strand, 12695339 - 12695298
Alignment:
Q  119 cattgcattcaacaatattttgattattaaaaagttaaattc 160  Q
    ||||| |||||||||| |||||||| ||||||||||||||||    
T  12695339 cattgaattcaacaatgttttgatttttaaaaagttaaattc 12695298  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 6999182 - 6999250
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||| ||||||| | |||||||||||||||    
T  6999182 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaacattttgacttttaaaaagttaaatt 6999250  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 159
Target Start/End: Complemental strand, 11445448 - 11445380
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    ||||||||||||||| |||  ||||||||||||  |||||||| |||||||   |||||||||||||||    
T  11445448 gttaaggaaaccaaaagtaacatgtttgcattggtttcaacaacattttgacatttaaaaagttaaatt 11445380  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 27495123 - 27495171
Alignment:
Q  111 tatgtttgcattgcattcaacaatattttgattattaaaaagttaaatt 159  Q
    |||||||||||||  |||||||| ||||||||| |||||| ||||||||    
T  27495123 tatgtttgcattggtttcaacaacattttgatttttaaaatgttaaatt 27495171  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 16900 - 16836
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagtta 155  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | |||||||||||    
T  16900 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagtta 16836  T

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Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 27068 - 27004
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagtta 155  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | |||||||||||    
T  27068 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagtta 27004  T

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Target: scaffold0062; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 37234 - 37170
Alignment:
Q  92 gttaaggaaaccaaatgtat-atgtttgcattgcattcaacaatattttgattattaaaaagtta 155  Q
    ||||||||| ||||| |||  ||||||||||||  |||||||||||||||| | |||||||||||    
T  37234 gttaaggaagccaaaagtagcatgtttgcattggtttcaacaatattttgacttttaaaaagtta 37170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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