View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20519_high_19 (Length: 374)

Name: NF20519_high_19
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20519_high_19
NF20519_high_19
[»] chr4 (12 HSPs)
chr4 (27-244)||(2671528-2671745)
chr4 (38-244)||(20945859-20946064)
chr4 (315-363)||(20946135-20946183)
chr4 (38-169)||(11148348-11148479)
chr4 (315-363)||(2671816-2671864)
chr4 (42-90)||(28426836-28426884)
chr4 (41-87)||(23702398-23702444)
chr4 (38-90)||(2672972-2673024)
chr4 (39-87)||(4906128-4906176)
chr4 (39-87)||(4933343-4933391)
chr4 (39-87)||(29756271-29756319)
chr4 (35-87)||(55019369-55019421)
[»] chr8 (7 HSPs)
chr8 (39-244)||(7274507-7274711)
chr8 (317-363)||(7274388-7274434)
chr8 (39-87)||(359326-359374)
chr8 (108-160)||(45447074-45447126)
chr8 (41-87)||(21142480-21142526)
chr8 (38-87)||(357975-358024)
chr8 (38-90)||(7272898-7272950)
[»] chr3 (15 HSPs)
chr3 (40-244)||(55196574-55196779)
chr3 (36-244)||(1676979-1677186)
chr3 (315-363)||(1677257-1677305)
chr3 (315-363)||(13645214-13645262)
chr3 (315-363)||(55196850-55196898)
chr3 (39-90)||(3025822-3025873)
chr3 (36-97)||(39870450-39870511)
chr3 (107-169)||(3149329-3149391)
chr3 (40-90)||(5377807-5377857)
chr3 (317-363)||(26538698-26538744)
chr3 (37-91)||(27662665-27662719)
chr3 (42-87)||(24613624-24613669)
chr3 (107-160)||(27661162-27661215)
chr3 (319-363)||(27662345-27662389)
chr3 (36-88)||(55198328-55198380)
[»] chr2 (14 HSPs)
chr2 (40-244)||(5696225-5696428)
chr2 (315-363)||(5696106-5696154)
chr2 (43-165)||(28167264-28167386)
chr2 (318-362)||(30546028-30546072)
chr2 (40-92)||(16288508-16288560)
chr2 (107-167)||(30545708-30545768)
chr2 (40-87)||(10343988-10344035)
chr2 (40-87)||(22060172-22060219)
chr2 (40-90)||(9262901-9262951)
chr2 (111-160)||(16288910-16288959)
chr2 (37-90)||(28165655-28165708)
chr2 (39-87)||(22054333-22054381)
chr2 (39-87)||(43516397-43516445)
chr2 (39-87)||(44820942-44820990)
[»] chr7 (7 HSPs)
chr7 (36-169)||(38758247-38758380)
chr7 (107-162)||(27161932-27161987)
chr7 (115-169)||(27160380-27160434)
chr7 (315-360)||(5975394-5975439)
chr7 (38-87)||(41385821-41385870)
chr7 (34-87)||(41591509-41591562)
chr7 (39-87)||(41384148-41384196)
[»] chr1 (14 HSPs)
chr1 (39-244)||(43882053-43882257)
chr1 (315-363)||(43882328-43882376)
chr1 (39-160)||(46605861-46605982)
chr1 (107-162)||(33753702-33753757)
chr1 (40-169)||(13222914-13223042)
chr1 (36-87)||(26734422-26734473)
chr1 (39-90)||(43883814-43883865)
chr1 (38-90)||(12097949-12098001)
chr1 (39-87)||(31809988-31810036)
chr1 (40-87)||(8322521-8322568)
chr1 (116-169)||(33755245-33755298)
chr1 (39-87)||(8323451-8323499)
chr1 (39-87)||(9627593-9627641)
chr1 (39-87)||(31815782-31815830)
[»] chr5 (4 HSPs)
chr5 (39-169)||(33489829-33489959)
chr5 (107-169)||(35929589-35929651)
chr5 (107-169)||(6535572-6535634)
chr5 (38-87)||(9672363-9672412)
[»] scaffold0129 (1 HSPs)
scaffold0129 (34-87)||(4269-4322)
[»] scaffold0060 (1 HSPs)
scaffold0060 (38-87)||(13263-13312)
[»] chr6 (3 HSPs)
chr6 (38-87)||(19402134-19402183)
chr6 (39-87)||(843533-843581)
chr6 (39-87)||(11065666-11065714)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 2671528 - 2671745
Alignment:
Q  27 ataatagaatttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnn-gttgcgaaacaacccctgt 125  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||   ||||||        |||||||||||||||||||    
T  2671528 ataatagaatttaggcttaaataagaaaaaggtccctgtaagttcgcgcatttttggttttagtccctgtatcttttttttgttgcgaaacaacccctgt 2671627  T
Q  126 atttacttaatattttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgaca 225  Q
    |||||||||| ||||||||||||||||||||||||| |||||||         || |||||||||||||||||||||||||| |||||||||||||||||    
T  2671628 atttacttaacattttgacattcgtccctgccgtccgtttccgtcaaaaaaa-cgattctctggctaacggactaatatgtgccatatgatgagctgaca 2671726  T
Q  226 attggctattagagggact 244  Q
    |||||||||||||||||||    
T  2671727 attggctattagagggact 2671745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 38 - 244
Target Start/End: Original strand, 20945859 - 20946064
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaata 137  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||  |||||||       |||||||||||| |||| ||||||||||| |    
T  20945859 taggcttaaataagaaaaaggtctttgtaagttcgcgcattttttgttttagtctttgtatctttttttgttgcgaaacaatccctatatttacttaaca 20945958  T
Q  138 ttttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattag 237  Q
    ||||| ||||||||||||| |||| |||||||         |||||  ||| |||||||||||||||||||||||||||||| || ||||||| ||||||    
T  20945959 ttttggcattcgtccctgctgtccgtttccgt-caaaaaaacgctttgctgactaacggactaatatgtggcatatgatgagttggcaattggttattag 20946057  T
Q  238 agggact 244  Q
    |||||||    
T  20946058 agggact 20946064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 20946135 - 20946183
Alignment:
Q  315 catattatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20946135 catattatttccaccttcttcctcactatgttatttctctcttcttcat 20946183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 11148348 - 11148479
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaata 137  Q
    |||||||||||||| ||||||| | |||||||| |||| ||||| ||||||||   | ||||       ||||||||||||||| |||||||||||||      
T  11148348 taggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtcgctatatctttttttgttgcgaaacaacccttgtatttacttaacc 11148447  T
Q  138 ttttgacattcgtccctgccgtccatttccgt 169  Q
    |||||| ||| |||||||||||| ||||||||    
T  11148448 ttttgaaattggtccctgccgtctatttccgt 11148479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 2671816 - 2671864
Alignment:
Q  315 catattatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  2671816 catattattttcaccttcttcctcactatgttacttctctcttcttcat 2671864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 28426836 - 28426884
Alignment:
Q  42 cttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 90  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||||    
T  28426836 cttaaataagtaaaaggtccatgtaagttggcgcattttttgttttagt 28426884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 23702398 - 23702444
Alignment:
Q  41 gcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||| | ||||||| | |||||||||||||||||||||||||    
T  23702398 gcttaaatatgtaaaaggtccttgtaagttcgcgcattttttgtttt 23702444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 2673024 - 2672972
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 90  Q
    |||||||||||||| ||||| |  ||||||||| |||||||||| ||||||||    
T  2673024 taggcttaaataagtaaaagatctatgtaagttggcgcatttttggttttagt 2672972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 4906128 - 4906176
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  4906128 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 4906176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 4933391 - 4933343
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  4933391 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 4933343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 29756271 - 29756319
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  29756271 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 29756319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 55019421 - 55019369
Alignment:
Q  35 atttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||||||| | ||| ||| | ||||| |||||||||||||||||||    
T  55019421 atttaggcttaaatatgtaaatggtccttgtaatttcgcgcattttttgtttt 55019369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 39 - 244
Target Start/End: Complemental strand, 7274711 - 7274507
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatat 138  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||  ||||||       ||||||||||||||||||||||||||||| ||    
T  7274711 aggcttaaataagaaaaaggtccctgtaagttcgcgcattttttgttttagttcctgtatctttttttgttgcgaaacaacccctgtatttacttaacat 7274612  T
Q  139 tttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattaga 238  Q
    ||||||||||||||| ||||||| |||||||         |||||| |||||||||||||||||||||||||||||||||| || ||||||| |||||||    
T  7274611 tttgacattcgtccccgccgtccgtttccgt-caaaaaaacgcttcgctggctaacggactaatatgtggcatatgatgagttggcaattggttattaga 7274513  T
Q  239 gggact 244  Q
    | ||||    
T  7274512 gagact 7274507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 7274434 - 7274388
Alignment:
Q  317 tattatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7274434 tattatttccaccttcttcctcactatgttatttctctcttcttcat 7274388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 359374 - 359326
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | |||||||||||||||||||||||||    
T  359374 aggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 359326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 45447074 - 45447126
Alignment:
Q  108 ttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtc 160  Q
    |||||||||||||| ||||||| |||||  |||||| ||||||||||||||||    
T  45447074 ttgcgaaacaacccttgtattttcttaactttttgaaattcgtccctgccgtc 45447126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 21142480 - 21142526
Alignment:
Q  41 gcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||| | ||||||| | |||||||||||||||||||||||||    
T  21142480 gcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 21142526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 357975 - 358024
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  357975 taggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 358024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 7272898 - 7272950
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 90  Q
    |||||||||||||| |||||||   |||||||| |||||||||| ||||||||    
T  7272898 taggcttaaataagtaaaaggtctctgtaagttggcgcatttttggttttagt 7272950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 55196574 - 55196779
Alignment:
Q  40 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnn-gttgcgaaacaacccctgtatttacttaatat 138  Q
    |||||||||||||||||||| | ||||||||||||||||||| ||||||||   ||||||        ||||||||||||||||||||||||||||| |     
T  55196574 ggcttaaataagaaaaaggtccttgtaagttcgcgcatttttggttttagtccatgtatcttttttttgttgcgaaacaacccctgtatttacttaacac 55196673  T
Q  139 tttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattaga 238  Q
    ||||||||||||||||||||||| |||||||         |||||| |||||||||||||||||| || |||||||||||| || ||||||| |||||||    
T  55196674 tttgacattcgtccctgccgtccgtttccgtaaaaaaaaacgcttcgctggctaacggactaatacgtcgcatatgatgagttggcaattggttattaga 55196773  T
Q  239 gggact 244  Q
    ||||||    
T  55196774 gggact 55196779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 36 - 244
Target Start/End: Original strand, 1676979 - 1677186
Alignment:
Q  36 tttaggcttaaataagaaaaaggttcatg-taagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttactta 134  Q
    ||||||||||||||||||||| || |||| ||||| | | ||||||| ||||||||   ||||||       ||||||||||||| ||| ||||||||||    
T  1676979 tttaggcttaaataagaaaaacgt-catggtaagtacacacatttttggttttagtccctgtatctttttttgttgcgaaacaactcctatatttactta 1677077  T
Q  135 atattttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctat 234  Q
    | ||||||||||||||||||||||||| |||||||         |||||| |||| |||||||| |||||||||||||||||||| |||||||||| |||    
T  1677078 acattttgacattcgtccctgccgtccgtttccgt-caaaaaaacgcttcgctggttaacggaccaatatgtggcatatgatgagttgacaattggttat 1677176  T
Q  235 tagagggact 244  Q
    ||||||||||    
T  1677177 tagagggact 1677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 1677257 - 1677305
Alignment:
Q  315 catattatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1677257 catattatttccaccttcttcctcactatgttctttctctcttcttcat 1677305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 13645262 - 13645214
Alignment:
Q  315 catattatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  13645262 catattctttccaccttcttcctcactatgttctttctctcttcttcat 13645214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 55196850 - 55196898
Alignment:
Q  315 catattatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  55196850 catattatttccaccttattcctcactatgttattcctctcttcttcat 55196898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 3025822 - 3025873
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 90  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  3025822 aggcttaaataagtaaaaggttcctgtaagttggcgcattttttgttttagt 3025873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 39870450 - 39870511
Alignment:
Q  36 tttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgta 97  Q
    |||||||||||||||| ||||||||| ||||||||  ||| ||||||||||||||| |||||    
T  39870450 tttaggcttaaataagtaaaaggttcttgtaagttgacgcgttttttgttttagttcttgta 39870511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 3149329 - 3149391
Alignment:
Q  107 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 169  Q
    ||||||||||||||| |||||||||||||  |||||| ||| ||| |||||||| ||||||||    
T  3149329 gttgcgaaacaacccttgtatttacttaaccttttgaaattggtctctgccgtctatttccgt 3149391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 5377807 - 5377857
Alignment:
Q  40 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 90  Q
    |||||||||||| ||||||| | ||||| || |||||||||||||||||||    
T  5377807 ggcttaaataagtaaaaggtccctgtaaattggcgcattttttgttttagt 5377857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 26538744 - 26538698
Alignment:
Q  317 tattatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    |||| |||||||||||||||||||| |||| |||| |||||||||||    
T  26538744 tattttttccaccttcttcctcactctgttctttccctcttcttcat 26538698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 27662719 - 27662665
Alignment:
Q  37 ttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagtt 91  Q
    ||||||||||||||| ||||||| |  ||||||| |||| |||||||||||||||    
T  27662719 ttaggcttaaataagtaaaaggtcccggtaagttagcgcgttttttgttttagtt 27662665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 24613669 - 24613624
Alignment:
Q  42 cttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||| | ||||||| | |||||||||||||||||||||||||    
T  24613669 cttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 24613624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 160
Target Start/End: Original strand, 27661162 - 27661215
Alignment:
Q  107 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtc 160  Q
    ||||||||||||||  |||||||||||||| |||||| ||| ||| ||||||||    
T  27661162 gttgcgaaacaacctttgtatttacttaattttttgaaattggtctctgccgtc 27661215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 27662389 - 27662345
Alignment:
Q  319 ttatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    |||||||||||||||||||| || |||| |||||||| |||||||    
T  27662389 ttatttccaccttcttcctctctctgttctttctctcatcttcat 27662345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 55198380 - 55198328
Alignment:
Q  36 tttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttta 88  Q
    ||||| |||||||||| ||||||| | ||||| || |||||||||||||||||    
T  55198380 tttagacttaaataagtaaaaggtccttgtaaattggcgcattttttgtttta 55198328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 5696428 - 5696225
Alignment:
Q  40 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatatt 139  Q
    |||||||||||||||||||| |||||||||| |||||||||| ||||||||  |||||||       |||| ||||||||| |||||||||||||| |||    
T  5696428 ggcttaaataagaaaaaggtccatgtaagtttgcgcatttttagttttagtctttgtatctttttttgttgtgaaacaacctctgtatttacttaacatt 5696329  T
Q  140 ttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattagag 239  Q
    ||||||||||||||| |||||  |||| ||           |||| |||||||||||||||||| ||||||||||||||| || ||||||  ||||||||    
T  5696328 ttgacattcgtccctaccgtctgtttctgtcaaaaaaat-acttcgctggctaacggactaatacgtggcatatgatgagttggcaattgattattagag 5696230  T
Q  240 ggact 244  Q
    |||||    
T  5696229 ggact 5696225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 5696154 - 5696106
Alignment:
Q  315 catattatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5696154 catattatttccaccttcttcctcactatgttatttctctcttcttcat 5696106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 28167386 - 28167264
Alignment:
Q  43 ttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatattttg 142  Q
    ||||||||| ||||||| | |||||||| |||| ||||| ||||||||  |||||||       ||||||||||||||| |||||||||||||  |||||    
T  28167386 ttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtccttgtatctttttttgttgcgaaacaacccttgtatttacttaaccttttg 28167287  T
Q  143 acattcgtccctgccgtccattt 165  Q
    | ||| ||| |||||||| ||||    
T  28167286 aaattggtctctgccgtctattt 28167264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 30546028 - 30546072
Alignment:
Q  318 attatttccaccttcttcctcactatgttatttctctcttcttca 362  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  30546028 attatttccaccttcttcctcactctgttatttctctcttcttca 30546072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 16288508 - 16288560
Alignment:
Q  40 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagtta 92  Q
    |||||||||||||| |||||  |||||| ||||||||||||||||||||||||    
T  16288508 ggcttaaataagaagaaggtctatgtaaattcgcgcattttttgttttagtta 16288560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 30545708 - 30545768
Alignment:
Q  107 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtccatttcc 167  Q
    ||||| ||||||| | ||||||||||||||||||||| ||| ||||||| ||||| |||||    
T  30545708 gttgcaaaacaactcttgtatttacttaatattttgaaattggtccctgtcgtccgtttcc 30545768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 10343988 - 10344035
Alignment:
Q  40 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||||| | ||||||| |||||||||||| ||||||||||||||    
T  10343988 ggcttaaatatgtaaaaggtccatgtaagttcgtgcattttttgtttt 10344035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 87
Target Start/End: Complemental strand, 22060219 - 22060172
Alignment:
Q  40 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  22060219 ggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggtttt 22060172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 9262951 - 9262901
Alignment:
Q  40 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 90  Q
    |||||||||||| ||||||||| ||||||||||||| | ||| ||||||||    
T  9262951 ggcttaaataagtaaaaggttcctgtaagttcgcgcgtatttggttttagt 9262901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 16288959 - 16288910
Alignment:
Q  111 cgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtc 160  Q
    ||||||||||| ||||||| |||||  |||||| ||||||||||||||||    
T  16288959 cgaaacaacccttgtattttcttaactttttgaaattcgtccctgccgtc 16288910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 28165655 - 28165708
Alignment:
Q  37 ttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 90  Q
    ||||||||||||| | ||||||| |||||||||| |||| ||||| ||||||||    
T  28165655 ttaggcttaaatatgtaaaaggtccatgtaagttagcgcgtttttggttttagt 28165708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 22054333 - 22054381
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  22054333 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 22054381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 43516397 - 43516445
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||| |||||||||||||||||||    
T  43516397 aggcttaaatatgtaaaaggtccctgtaatttcgcgcattttttgtttt 43516445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 44820990 - 44820942
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||| |||||||||||||||||||    
T  44820990 aggcttaaatatgtaaaaggtccctgtaaattcgcgcattttttgtttt 44820942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 36 - 169
Target Start/End: Complemental strand, 38758380 - 38758247
Alignment:
Q  36 tttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaa 135  Q
    |||||||||||||||| ||||||| | |||||||| |||| ||||| ||||||||   ||||||       ||||||||||||||| |||||||||||||    
T  38758380 tttaggcttaaataagtaaaaggtccctgtaagttagcgcgtttttggttttagtccctgtatctttttttgttgcgaaacaacccttgtatttacttaa 38758281  T
Q  136 tattttgacattcgtccctgccgtccatttccgt 169  Q
      |||||| ||| |||||| ||||| ||||||||    
T  38758280 ccttttgaaattggtccctaccgtctatttccgt 38758247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 27161987 - 27161932
Alignment:
Q  107 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtcca 162  Q
    ||||||| |||||||||||||||||  ||| ||||||||||| ||| |||||||||    
T  27161987 gttgcgagacaacccctgtatttacgaaatgttttgacattcatccatgccgtcca 27161932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 27160380 - 27160434
Alignment:
Q  115 acaacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 169  Q
    |||||||||||||||||  ||  ||||||||||||||| ||||||||| ||||||    
T  27160380 acaacccctgtatttaccaaacgttttgacattcgtccatgccgtccaattccgt 27160434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 5975439 - 5975394
Alignment:
Q  315 catattatttccaccttcttcctcactatgttatttctctcttctt 360  Q
    |||||| |||||||||| ||||||| |||||| |||||||||||||    
T  5975439 catattctttccaccttgttcctcattatgttctttctctcttctt 5975394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 41385870 - 41385821
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||||||| | ||| ||| | |||||||||||||||||||||||||    
T  41385870 taggcttaaatatgtaaatggtccctgtaagttcgcgcattttttgtttt 41385821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 41591509 - 41591562
Alignment:
Q  34 aatttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||| ||||||||||| | ||||||| | ||||| |||||||||||||||||||    
T  41591509 aattaaggcttaaatatgtaaaaggtccctgtaatttcgcgcattttttgtttt 41591562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 41384148 - 41384196
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||| ||| | |||||||||||||||||||||||||    
T  41384148 aggcttaaatatgtaaatggtccttgtaagttcgcgcattttttgtttt 41384196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 39 - 244
Target Start/End: Original strand, 43882053 - 43882257
Alignment:
Q  39 aggcttaaataagaaaaa-ggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaata 137  Q
    |||||||||||||||||| ||  | ||||||||||||| ||||| ||||||||   ||||||       |||||||||||||||||||||||||| || |    
T  43882053 aggcttaaataagaaaaaaggcccttgtaagttcgcgcttttttggttttagtccctgtatctttttt-gttgcgaaacaacccctgtatttactaaaca 43882151  T
Q  138 ttttgacattcgtccctgccgtccatttccgtnnnnnnnnncgcttctctggctaacggactaatatgtggcatatgatgagctgacaattggctattag 237  Q
    |||||||||||||||||||||| | ||   ||         | |||| ||| ||||||||||||||  ||||||||||||||  ||||||||| ||||||    
T  43882152 ttttgacattcgtccctgccgtgcgttcttgt-caaaaaaacacttcgctgactaacggactaatacatggcatatgatgagtcgacaattggttattag 43882250  T
Q  238 agggact 244  Q
    |||||||    
T  43882251 agggact 43882257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 43882328 - 43882376
Alignment:
Q  315 catattatttccaccttcttcctcactatgttatttctctcttcttcat 363  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  43882328 catattatttccaccttcttcctcactatgttatttctctcttcttcat 43882376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 46605982 - 46605861
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatat 138  Q
    ||||||||||||||||||||| | || |||| ||||| ||||||||||||||   ||||         ||||||||||||||| ||||||| |||||  |    
T  46605982 aggcttaaataagaaaaaggtccctgaaagtccgcgcgttttttgttttagtccctgtaagtttttttgttgcgaaacaacccttgtattttcttaactt 46605883  T
Q  139 tttgacattcgtccctgccgtc 160  Q
    ||||| ||||||||||||||||    
T  46605882 tttgaaattcgtccctgccgtc 46605861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 33753702 - 33753757
Alignment:
Q  107 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtcca 162  Q
    ||||||| |||||||||||||||||  ||| |||||||||||||||||||||||||    
T  33753702 gttgcgagacaacccctgtatttacgaaatgttttgacattcgtccctgccgtcca 33753757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 169
Target Start/End: Original strand, 13222914 - 13223042
Alignment:
Q  40 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatatt 139  Q
    |||||||||||| ||||||| | |||||||| || | ||||| ||||||||   ||||||       ||||||||||||||| |||||||| ||||  ||    
T  13222914 ggcttaaataagtaaaaggtccctgtaagttagcacgtttttggttttagtccgtgtatctttttt-gttgcgaaacaacccttgtatttatttaacctt 13223012  T
Q  140 ttgacattcgtccctgccgtccatttccgt 169  Q
    |||| ||| |||||||||||| ||||||||    
T  13223013 ttgaaattggtccctgccgtctatttccgt 13223042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 26734422 - 26734473
Alignment:
Q  36 tttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||| |||||    
T  26734422 tttaggcttaaatatgtaaaaggtccatgtaagttcgcgcatttttggtttt 26734473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 43883865 - 43883814
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 90  Q
    ||||||||||||| ||||||| |||||||||| | |||||||||||||||||    
T  43883865 aggcttaaataagtaaaaggtccatgtaagttggtgcattttttgttttagt 43883814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 12098001 - 12097949
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagt 90  Q
    |||||||||||||| ||||||| |  |||||||||||||||||| ||||||||    
T  12098001 taggcttaaataagtaaaaggtccccgtaagttcgcgcatttttggttttagt 12097949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 31809988 - 31810036
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | |||||||||||||||||||||||||    
T  31809988 aggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 31810036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 87
Target Start/End: Original strand, 8322521 - 8322568
Alignment:
Q  40 ggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||||| | ||||||| | |||||||||||||||||||||||||    
T  8322521 ggcttaaatatgtaaaaggtccctgtaagttcgcgcattttttgtttt 8322568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 33755298 - 33755245
Alignment:
Q  116 caacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 169  Q
    ||||||||||||||||  ||  |||||| |||||||||||||||||| ||||||    
T  33755298 caacccctgtatttaccaaacgttttgatattcgtccctgccgtccaattccgt 33755245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 8323499 - 8323451
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  8323499 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 8323451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 9627641 - 9627593
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | |||||||   |||||||||||||||||||||||||    
T  9627641 aggcttaaatatgtaaaaggtctctgtaagttcgcgcattttttgtttt 9627593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 31815830 - 31815782
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  31815830 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 31815782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 33489959 - 33489829
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgttttagttattgtatcnnnnnnngttgcgaaacaacccctgtatttacttaatat 138  Q
    ||||||||||||| |||| || | |||||||| |||| ||||| ||||||||   ||||||       |||||||||||||||||||||||||||||  |    
T  33489959 aggcttaaataagtaaaatgtccctgtaagttagcgcgtttttcgttttagtccctgtatctttttttgttgcgaaacaacccctgtatttacttaactt 33489860  T
Q  139 tttgacattcgtccctgccgtccatttccgt 169  Q
    ||| | ||| | |||||||||| ||||||||    
T  33489859 tttaaaattggcccctgccgtctatttccgt 33489829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 35929589 - 35929651
Alignment:
Q  107 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 169  Q
    ||||||| |||||||||||||||||  ||  ||||||||||||||||||||||||| ||||||    
T  35929589 gttgcgagacaacccctgtatttaccaaacgttttgacattcgtccctgccgtccaattccgt 35929651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 6535634 - 6535572
Alignment:
Q  107 gttgcgaaacaacccctgtatttacttaatattttgacattcgtccctgccgtccatttccgt 169  Q
    ||||||||||||||| |||||||||||||  |||||| ||| || | ||||||| ||||||||    
T  6535634 gttgcgaaacaacccttgtatttacttaaccttttgaaattggttcttgccgtctatttccgt 6535572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 9672412 - 9672363
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||||   ||||||| | |||||||||||||||||||||||||    
T  9672412 taggcttaaatatataaaaggtccctgtaagttcgcgcattttttgtttt 9672363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 4322 - 4269
Alignment:
Q  34 aatttaggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  4322 aatttaggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 4269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 13312 - 13263
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||||||| | ||||||| | ||||||||| |||||||||||||||    
T  13312 taggcttaaatatgtaaaaggtccctgtaagttcacgcattttttgtttt 13263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 19402183 - 19402134
Alignment:
Q  38 taggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    |||||||||||| | ||||||| | ||||||||||| |||||||||||||    
T  19402183 taggcttaaatatgtaaaaggtccttgtaagttcgcacattttttgtttt 19402134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 843581 - 843533
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  843581 aggcttaaatatgtaaaaggtccctgtaagttcgcgcatttttggtttt 843533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 11065714 - 11065666
Alignment:
Q  39 aggcttaaataagaaaaaggttcatgtaagttcgcgcattttttgtttt 87  Q
    ||||||||||| | ||||||| | ||||||||||||||||||| |||||    
T  11065714 aggcttaaatatgtaaaaggtccttgtaagttcgcgcatttttggtttt 11065666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University