View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_high_24 (Length: 335)
Name: NF20519_high_24
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 3361930 - 3362238
Alignment:
| Q |
18 |
gtttgaaggcttcaagaacttgaaaagtcttgaattgagtcacgttacaatgactcaagattcgtttgaaaacatgatctccaacagcccttttcttgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3361930 |
gtttgaaggcttcaagaacttgaaaagtcttgaattgagtcacgttacaatgactcaagattcttttgaaaacatgatctccaacagcccttttcttgaa |
3362029 |
T |
|
| Q |
118 |
aacttgatgttgtttaaccttgacggtttcagccaaattaatatccacggaccaaatctgaaggttgctcatatcagtggtgaatttgaggatattagct |
217 |
Q |
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|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3362030 |
aaattgatgttgtttaaccttgatggtttcagccaaattaatatccacggaccaaatctgaaggttgctcatatcagtggtgaatttgaggatattagct |
3362129 |
T |
|
| Q |
218 |
ttgaaaacactttccgattagttgagttaacgatgtgtttagactatggatgctatctagttaaattgtgtggatgctctagcaatttgcttcgattttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3362130 |
ttgaaaacactttccgattagttgagttaacgatgtatttagactatggatgcaatctagttaaattgcgtggatgctctagcaatttgcttcgattttt |
3362229 |
T |
|
| Q |
318 |
cgttcatct |
326 |
Q |
| |
|
||||||||| |
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|
| T |
3362230 |
cgttcatct |
3362238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 2006781 - 2006883
Alignment:
| Q |
136 |
cttgacggtttcagccaaattaatatccacggaccaaatctgaaggttgctcatatcagtggtgaatttgaggatattagctttgaaaacactttccgat |
235 |
Q |
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||||| ||||||| |||||| || || |||| ||||||||| |||||| ||||| ||||| |||||||||||||||||||||| |||||||||| || |
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| T |
2006781 |
cttgatggtttcacccaaataaacattcacgcaccaaatcttaaggttttggatatctgtggtaaatttgaggatattagctttgacaacactttccaat |
2006880 |
T |
|
| Q |
236 |
tag |
238 |
Q |
| |
|
||| |
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|
| T |
2006881 |
tag |
2006883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 3218335 - 3218258
Alignment:
| Q |
18 |
gtttgaaggcttcaagaacttgaaaagtcttgaattgagtcacgttacaatgactcaagattcgtttgaaaacatgat |
95 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | ||| ||||||||| |||||||| | ||||||||| |||| |
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|
| T |
3218335 |
gtttaaaggcttcaagaacttgaaaagtcttgaactatatcaggttacaatggctcaagatgcttttgaaaacttgat |
3218258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 2012333 - 2012367
Alignment:
| Q |
195 |
tggtgaatttgaggatattagctttgaaaacactt |
229 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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|
| T |
2012333 |
tggtaaatttgaggatattagctttgaaaacactt |
2012367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 3379072 - 3379172
Alignment:
| Q |
137 |
ttgacggtttcagccaaattaatatccacggaccaaatctgaaggttgctcatatcagtggtgaatttgaggatattagctttgaaaacactttccgatt |
236 |
Q |
| |
|
|||| ||||||| ||||||||| |||| |||||||||||||||| | | || ||||| ||||||||||||||| ||||| ||||| ||||| ||| |
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|
| T |
3379072 |
ttgatggtttcacacaaattaatgctcacgcaccaaatctgaaggtttttaaaattggtggtaaatttgaggatattaactttggaaacaatttccaatt |
3379171 |
T |
|
| Q |
237 |
a |
237 |
Q |
| |
|
| |
|
|
| T |
3379172 |
a |
3379172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 20923689 - 20923766
Alignment:
| Q |
18 |
gtttgaaggcttcaagaacttgaaaagtcttgaattgagtcacgttacaatgactcaagattcgtttgaaaacatgat |
95 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||| || |||||| || || ||||| | ||||||||| |||| |
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| T |
20923689 |
gtttgaaggcttcatgaacttgaaaagtcttcaattggaacaagttacagtggctaaagatgcttttgaaaacttgat |
20923766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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