View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_high_27 (Length: 321)
Name: NF20519_high_27
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_27 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 105 - 321
Target Start/End: Complemental strand, 11213603 - 11213387
Alignment:
| Q |
105 |
ccaacacaatcacaagaattcaaacaaccttgctcacacaaactcctagatttagccttaaaactactcacattctcaaaaccaaaccttacaacaccaa |
204 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
11213603 |
ccaacacaatcacaagaattcaaacaacctcgctcacacaaactcctagatttagccctgaaactactcacattctcaaaaccaaaccttacaacaccaa |
11213504 |
T |
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| Q |
205 |
aatcctcaaaaccatcaccattatcacaaagcttctcccctctccaacatccccccgaataatcaccggaactccatccaccaccgtccaccgccacaaa |
304 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11213503 |
aatcctcaaaaccatcaccattatcacaaaccttctcccctctccaacatccccccgaataatcaccggaactccatccaccaccgtccaccgccacaaa |
11213404 |
T |
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| Q |
305 |
acccttaacacactcac |
321 |
Q |
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||||||||||||||||| |
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| T |
11213403 |
acccttaacacactcac |
11213387 |
T |
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