View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20519_high_30 (Length: 309)
Name: NF20519_high_30
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 39551174 - 39551464
Alignment:
| Q |
1 |
acatatattaactagtactagtctttctgaccttggtgtaatatatcgctaggtatacctacttttttacaatgttaatttaataaatttttgtgtaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39551174 |
acatatattaactagtactagtctttctgaccttggtgtaatatatcgctaggtatacctacttttttacaatgttaatttaataaatttttgtgtaact |
39551273 |
T |
|
| Q |
101 |
tctttaattttcgagtattaaaatgaataacaaaatgggaaacctccaaaagatgatgttccgggtgggggtagttgtataccgagtttgtcattgaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39551274 |
tctttaattttcgagtattaaaatgaataacaaaatgggaaacctccaaaagatgatgttccgggtgggggtagttgtataccgagtttgtcattgaatt |
39551373 |
T |
|
| Q |
201 |
ggcaagtgggtcattaaagcttacaaattttaaattgtttttgcatttctgaacaattccaacacaagttcttaatcaatgaagtcgtaaa |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39551374 |
ggcaagtgggtcattaaagcttacaaattttaaattgtttttgcatttctgaacaattccaacacaagttcttaatcaatgaagtcgtaaa |
39551464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 101 - 253
Target Start/End: Original strand, 39559782 - 39559926
Alignment:
| Q |
101 |
tctttaattttcgagtattaaaatgaataacaaaatgggaaacctccaaaagatgatgttccgggtgggggtagttgtataccgagtttgtcattgaatt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||| |||| || | ||||||||||||| || ||||||||| ||||||||| |
|
|
| T |
39559782 |
tctttaaatttcgagtattaaaatgaatgacaaaatgggaaacctcgaaaatatta-------ggtgggggtagtt-taaaccgagttttacattgaatt |
39559873 |
T |
|
| Q |
201 |
ggcaagtgggtcattaaagcttacaaattttaaattgtttttgcatttctgaa |
253 |
Q |
| |
|
| ||| |||||| ||| || ||||| |||||||| || |||| ||||||||| |
|
|
| T |
39559874 |
gtcaattgggtctttatagtttacagattttaaagagtctttgtatttctgaa |
39559926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University