View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20519_high_32 (Length: 297)
Name: NF20519_high_32
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_32 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 24163994 - 24164170
Alignment:
| Q |
1 |
tatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgacgtaagtacnnnnnnnntgtgttattctaaagataactaagatttgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| |
|
|
| T |
24163994 |
tatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgacgtaagtacaaaaaaa-tgtgttattataaagataacaaagatttgatt |
24164092 |
T |
|
| Q |
101 |
aatttttcttgcatctctttacacagattagttataaaagcgtattttattaccgaaatgtatctcctcttgatcatg |
178 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24164093 |
catttttcttgcatctctttacacagattagttataaaagcgtattttattaccgaaatgtatctcctcttgatcatg |
24164170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 291
Target Start/End: Original strand, 24164225 - 24164283
Alignment:
| Q |
233 |
cgtctgagtgcgacatagtttgattttctcatcttagtgctgtgtagtttgatgttcat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24164225 |
cgtctgagtgcgacatagtttgattttctcatcttagtgcggtgtagtttgatgttcat |
24164283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1482111 - 1482063
Alignment:
| Q |
1 |
tatctcctcttgatcatagttttatcacctaaaatagttataaagaaat |
49 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||||||||||| |
|
|
| T |
1482111 |
tatctcctcttgatcatagatttatcacctgaagtagttataaagaaat |
1482063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 5315029 - 5314980
Alignment:
| Q |
1 |
tatctcctcttgatcatagttttatcacctaaaatagttataaagaaatg |
50 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||||| |||||| |
|
|
| T |
5315029 |
tatctcctcttgatcatagatttatcacctgaagtagttataatgaaatg |
5314980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5284226 - 5284175
Alignment:
| Q |
1 |
tatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgac |
52 |
Q |
| |
|
||||||||||||||||||| |||||||||| || ||||||||| ||||||| |
|
|
| T |
5284226 |
tatctcctcttgatcatagatttatcacctgaagtagttataataaaatgac |
5284175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 5310315 - 5310264
Alignment:
| Q |
1 |
tatctcctcttgatcatagttttatcacctaaaatagttataaagaaatgac |
52 |
Q |
| |
|
||||||||||||||||||| |||||||||| || | ||||||| |||||||| |
|
|
| T |
5310315 |
tatctcctcttgatcatagatttatcacctgaagtggttataatgaaatgac |
5310264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University