View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20519_high_41 (Length: 255)
Name: NF20519_high_41
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_41 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 30760067 - 30759823
Alignment:
| Q |
11 |
cagagatttgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatcttggctcaggactttacttt |
110 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30760067 |
cagagatttgtggacctttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatcttggctcaggactttacttt |
30759968 |
T |
|
| Q |
111 |
gagtttcatatcaaattaatcatttgtaattgaaactactctaatttaatacccataagtgaagattgcaataggaagataaaaaggaacaactacttgc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30759967 |
gagtttcatatcaaattaatcatttgtaactgaaactactctaatttattacccataagtgaagatttcaataggaagataaaaaggaacaactacttgc |
30759868 |
T |
|
| Q |
211 |
aacgtcaggtcttacaaccaaaataccctcaaacttttggcatat |
255 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30759867 |
aatgtcaggtcttacaaccaaaataccctcaaacttttggcatat |
30759823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 30749643 - 30749568
Alignment:
| Q |
180 |
aataggaagataaaaaggaacaactacttgcaacgtcaggtcttacaaccaaaataccctcaaacttttggcatat |
255 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30749643 |
aataggaagagaaaaaggaacaactacttgcaatgtcaggtcttacaaccaaaataccctcaaacttttggtatat |
30749568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 30749805 - 30749733
Alignment:
| Q |
13 |
gagatttgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgt |
87 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30749805 |
gagatttgtggacctttggtgcaccttggagagag--ttctcacaagcgttcaaagttatgatcatctagggtgt |
30749733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 30749708 - 30749641
Alignment:
| Q |
88 |
atcttggctcaggactttactttgagtttcatatcaaattaatcatttgtaattgaaactactctaat |
155 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| ||||||||| |||||||| ||||||||||||||| |
|
|
| T |
30749708 |
atcttggcttaggaatttactttgagttgcataacaaattaataatttgtaactgaaactactctaat |
30749641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 29823486 - 29823563
Alignment:
| Q |
13 |
gagatttgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
92 |
Q |
| |
|
||||| ||||||| |||||||| |||||| |||| |||||||||| |||||||||||||| || ||||||||| |||| |
|
|
| T |
29823486 |
gagatatgtggacctttggtgcgccttggtgagat--ttctcacaagtgtccaaagttatgaccagctagggtgtgtctt |
29823563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 1608070 - 1608023
Alignment:
| Q |
45 |
gagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
92 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
1608070 |
gagagttctcgcaagcgtccaaagttatgaccagctagggtgtgtctt |
1608023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 20536685 - 20536638
Alignment:
| Q |
45 |
gagagttctcacaagcgtccaaagttatgatcatctagggtgtatctt |
92 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || ||||||||| |||| |
|
|
| T |
20536685 |
gagagttctcgcaagcgtccaaagttatgaccaactagggtgtgtctt |
20536638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 58226 - 58173
Alignment:
| Q |
19 |
tgtggacttttggtgcaccttggagagagagttctcacaagcgtccaaagttatga |
74 |
Q |
| |
|
||||||| || |||||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
58226 |
tgtggaccttgggtgcacctt--agtgagagttctcgcaagcgtccaaagttatga |
58173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University