View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_high_43 (Length: 252)
Name: NF20519_high_43
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_43 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 12 - 252
Target Start/End: Complemental strand, 3362463 - 3362223
Alignment:
| Q |
12 |
acagaagaacaactctaaatcagaatataatttgtttttacacttacaattgaagagttgcatacataagattttggcataatttaaatttttagggggt |
111 |
Q |
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| T |
3362463 |
acagaagaacaactctaaatcagaatataatttgtttttacacttacaattgaagagttgcatacataagattttggcataatttaaatttgtagggggt |
3362364 |
T |
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| Q |
112 |
ttgaggggtggggaaacttcaacaacattaggtatgtcaatcttatagtcaagctctaaattcagatgctcgagcattatacctctaaaaaattgtgatg |
211 |
Q |
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| T |
3362363 |
ttgaggggtggggaaacttcaacaacattaggtatgtcaatcttatagtcaagctctacattcagatgcaagagcattatacctctaaaaaatagtgatg |
3362264 |
T |
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| Q |
212 |
aatctctaggctttgtatgtgaggtagatgaacgaaaaatc |
252 |
Q |
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| T |
3362263 |
aatctctaggctttgtatgtgaggtagatgaacgaaaaatc |
3362223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 3379325 - 3379259
Alignment:
| Q |
185 |
gcattatacctctaaaaaattgtgatgaatctctaggctttgtatgtgaggtagatgaacgaaaaat |
251 |
Q |
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| T |
3379325 |
gcattatacctttaaaaaataattaccaatctctaggctctgcatgtgaggtcgatgaacgaaaaat |
3379259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 4334478 - 4334516
Alignment:
| Q |
213 |
atctctaggctttgtatgtgaggtagatgaacgaaaaat |
251 |
Q |
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| T |
4334478 |
atctctaggctttgtatgtgaggtcgatgatcgaaaaat |
4334516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 20953590 - 20953512
Alignment:
| Q |
171 |
attcagatgctcgagcattatacctctaaaaaattgtgatgaatctctaggctttgtatgtgaggtagatgaacgaaaa |
249 |
Q |
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||||||||| | ||||| ||||||| |||||||||| | |||| |||||||||||||||||||||||||| |||||| |
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| T |
20953590 |
attcagatgtttgagcactatacctttaaaaaattgctttcaatcactaggctttgtatgtgaggtagatgatcgaaaa |
20953512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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