View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20519_high_46 (Length: 249)

Name: NF20519_high_46
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20519_high_46
NF20519_high_46
[»] chr3 (15 HSPs)
chr3 (27-195)||(4773822-4773990)
chr3 (27-196)||(39084722-39084891)
chr3 (27-196)||(48432528-48432697)
chr3 (1-195)||(12025562-12025756)
chr3 (27-196)||(45222323-45222492)
chr3 (27-197)||(44269767-44269937)
chr3 (27-197)||(1672553-1672723)
chr3 (67-197)||(52965768-52965897)
chr3 (27-193)||(8262529-8262695)
chr3 (43-168)||(52498927-52499052)
chr3 (27-192)||(15042604-15042768)
chr3 (107-184)||(40949038-40949115)
chr3 (125-175)||(11345807-11345857)
chr3 (125-177)||(31108707-31108759)
chr3 (121-183)||(7840978-7841039)
[»] chr1 (29 HSPs)
chr1 (1-196)||(14795972-14796167)
chr1 (1-196)||(14804846-14805041)
chr1 (1-195)||(21969276-21969470)
chr1 (27-196)||(8059591-8059760)
chr1 (1-190)||(19584418-19584608)
chr1 (1-195)||(31199929-31200123)
chr1 (30-196)||(51250612-51250778)
chr1 (27-195)||(40710132-40710300)
chr1 (30-195)||(50050340-50050505)
chr1 (27-175)||(38036476-38036624)
chr1 (27-195)||(1246826-1246993)
chr1 (27-195)||(7145495-7145662)
chr1 (40-196)||(15836488-15836643)
chr1 (27-196)||(32829339-32829506)
chr1 (131-195)||(5972872-5972936)
chr1 (27-195)||(39331165-39331333)
chr1 (78-197)||(220491-220610)
chr1 (106-196)||(31964295-31964386)
chr1 (60-184)||(26262189-26262313)
chr1 (27-195)||(29030387-29030554)
chr1 (95-190)||(17190061-17190156)
chr1 (101-195)||(43312701-43312795)
chr1 (43-128)||(14293966-14294051)
chr1 (62-184)||(28881906-28882020)
chr1 (117-177)||(46271508-46271568)
chr1 (95-197)||(14940047-14940148)
chr1 (95-197)||(14950054-14950155)
chr1 (95-197)||(14954295-14954396)
chr1 (135-195)||(30806348-30806407)
[»] chr2 (17 HSPs)
chr2 (27-197)||(22416440-22416610)
chr2 (1-196)||(30357387-30357582)
chr2 (27-193)||(34899164-34899330)
chr2 (27-197)||(8423835-8424005)
chr2 (27-195)||(27451672-27451840)
chr2 (1-131)||(37576003-37576133)
chr2 (122-195)||(10789141-10789214)
chr2 (27-195)||(17473613-17473779)
chr2 (60-184)||(36441261-36441384)
chr2 (27-195)||(20565336-20565503)
chr2 (93-144)||(10789089-10789140)
chr2 (140-195)||(37576248-37576303)
chr2 (60-197)||(18765085-18765215)
chr2 (27-195)||(17206233-17206400)
chr2 (134-197)||(16749299-16749362)
chr2 (95-142)||(8371573-8371620)
chr2 (27-137)||(5702603-5702713)
[»] chr7 (19 HSPs)
chr7 (27-196)||(36107050-36107219)
chr7 (27-195)||(24954241-24954409)
chr7 (1-195)||(33439039-33439233)
chr7 (27-197)||(40210586-40210756)
chr7 (27-195)||(41986711-41986879)
chr7 (29-197)||(10461554-10461722)
chr7 (27-197)||(32537982-32538152)
chr7 (27-196)||(37633068-37633237)
chr7 (40-184)||(3407915-3408059)
chr7 (40-183)||(44959184-44959327)
chr7 (30-183)||(24684930-24685077)
chr7 (88-168)||(28363151-28363231)
chr7 (41-183)||(16279165-16279307)
chr7 (120-168)||(3935881-3935929)
chr7 (60-131)||(49105884-49105955)
chr7 (27-93)||(3936706-3936772)
chr7 (27-127)||(25981067-25981167)
chr7 (61-175)||(33130345-33130459)
chr7 (123-195)||(23237496-23237568)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-195)||(396834-397028)
[»] chr4 (23 HSPs)
chr4 (27-196)||(23722829-23722998)
chr4 (1-194)||(42546997-42547191)
chr4 (27-195)||(27925732-27925900)
chr4 (27-195)||(32951735-32951903)
chr4 (27-194)||(26070983-26071150)
chr4 (46-197)||(43343042-43343193)
chr4 (41-192)||(11818768-11818919)
chr4 (60-195)||(16822127-16822260)
chr4 (27-193)||(890906-891072)
chr4 (27-168)||(24221783-24221923)
chr4 (27-198)||(26688362-26688531)
chr4 (67-195)||(39068611-39068738)
chr4 (27-197)||(41477416-41477586)
chr4 (27-184)||(23185418-23185574)
chr4 (99-195)||(15329250-15329346)
chr4 (127-177)||(34950152-34950202)
chr4 (30-168)||(54578532-54578657)
chr4 (95-177)||(7474288-7474370)
chr4 (196-233)||(39420882-39420919)
chr4 (150-192)||(2208713-2208755)
chr4 (27-137)||(30543675-30543784)
chr4 (95-168)||(9958327-9958399)
chr4 (135-175)||(28983890-28983930)
[»] chr5 (13 HSPs)
chr5 (27-195)||(23928384-23928552)
chr5 (27-196)||(9889224-9889393)
chr5 (27-197)||(29289883-29290053)
chr5 (27-196)||(40484264-40484432)
chr5 (40-195)||(34696268-34696423)
chr5 (30-195)||(35667876-35668041)
chr5 (27-184)||(14633751-14633908)
chr5 (41-194)||(26362604-26362756)
chr5 (27-195)||(6011174-6011341)
chr5 (40-114)||(10540102-10540176)
chr5 (60-191)||(425608-425739)
chr5 (95-168)||(4421028-4421100)
chr5 (133-177)||(7945781-7945824)
[»] chr6 (11 HSPs)
chr6 (1-195)||(3100530-3100724)
chr6 (27-197)||(8769921-8770091)
chr6 (1-195)||(30125744-30125938)
chr6 (27-195)||(18999842-19000010)
chr6 (27-195)||(31834526-31834694)
chr6 (51-189)||(13601141-13601278)
chr6 (46-168)||(17437190-17437312)
chr6 (90-195)||(23769830-23769931)
chr6 (27-195)||(6939931-6940099)
chr6 (68-195)||(24261188-24261314)
chr6 (71-195)||(9605920-9606043)
[»] chr8 (20 HSPs)
chr8 (34-196)||(33365581-33365743)
chr8 (44-197)||(31628139-31628292)
chr8 (1-197)||(232537-232733)
chr8 (1-197)||(708948-709144)
chr8 (1-197)||(746160-746356)
chr8 (1-197)||(870055-870251)
chr8 (27-192)||(3145-3309)
chr8 (51-195)||(15004147-15004291)
chr8 (27-195)||(22342934-22343101)
chr8 (27-195)||(22354594-22354761)
chr8 (27-202)||(37675294-37675468)
chr8 (29-184)||(39918578-39918733)
chr8 (42-168)||(37780863-37780989)
chr8 (51-195)||(30233436-30233580)
chr8 (41-168)||(27822558-27822685)
chr8 (100-191)||(41492399-41492490)
chr8 (67-196)||(13248027-13248155)
chr8 (27-175)||(24617314-24617461)
chr8 (60-168)||(39330537-39330644)
chr8 (42-92)||(29143038-29143088)
[»] scaffold0017 (1 HSPs)
scaffold0017 (51-177)||(28735-28861)
[»] scaffold0123 (1 HSPs)
scaffold0123 (40-176)||(26395-26531)
[»] scaffold0688 (2 HSPs)
scaffold0688 (27-137)||(2729-2839)
scaffold0688 (30-137)||(4399-4506)
[»] scaffold0954 (1 HSPs)
scaffold0954 (123-195)||(163-235)


Alignment Details
Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 4773990 - 4773822
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4773990 gggtaacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccg 4773891  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  4773890 gagtaccctatatggttcgggccttgggtttggccaaacccaacccaaatcaacccacttacaccccta 4773822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 39084891 - 39084722
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  39084891 gggtaacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaacccatccattaatttaacgggtggatattttacctaacccaaaccg 39084792  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39084791 gagtaccctatatagttagggtcttgggtttggccaaacccaacccaaatcaacccacttacacccctag 39084722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 48432697 - 48432528
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| ||||||| || ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48432697 gggtaacccactacccaaccaaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccg 48432598  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  48432597 gagtatcctatatggttcgggtcttgggtttggccaaacccaacccaaatcgacccacttacacccctag 48432528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 12025756 - 12025562
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||||||||||| |||||||||| |||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  12025756 catttcatattaacaaaaaaaaaaaagggtaacccactacccaacccaaaccaaactggaaattagtgggtttgcccaaacccacccattaatttaacgg 12025657  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  12025656 gtgtatattttacttaacccaaaccggagtaccctatatggttcgggtcttgggttttgtaaaacccaacccaaaccaacccacttacaccccta 12025562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 45222492 - 45222323
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    ||||||||||||||||||||||| |||||||| ||| || ||||||| || ||||||| |||||||| ||| ||||||| ||||||||| || |||||||    
T  45222492 gggtaacccactgcccaacccaaaccaaaccgaaaactagtgggttttcccaaacccatccattaatataatgggtggacattttacctcacccaaaccg 45222393  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||    
T  45222392 gggtaccctatatggttcgggtcttgggtttggtcaaacccaacccaaacccacccacgtacacccctag 45222323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 44269937 - 44269767
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||| |||||||||| ||||||| || |||||   ||| || ||||||||||||| |||||| || || |||||||    
T  44269937 gggtaacccactacccaacccaatccaacccggaaattagtgggtttacccaaaccggtccaatagtttaacgggtggacattttatctcacccaaaccg 44269838  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    ||||||| ||||||||| |||| ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  44269837 gagtaccttatatggtttgggttttgggtttggccaaacccaacccaaaccggcccacttacacccctagt 44269767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 1672553 - 1672723
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||| |||||||||| ||||||| || |||||  |||| || |||||||| |||| |||||| || || |||||||    
T  1672553 gggtaacccactacccaacccaatccaacccggaaattagtgggtttacccaaaccggcccaatagtttaacggatggacattttatctcacccaaaccg 1672652  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    ||||||| ||||||||| |||| |||| ||||||||||||||||| |||||  ||||||||||||||||||    
T  1672653 gagtaccttatatggtttgggttttggatttggccaaacccaacctaaaccggcccacttacacccctagt 1672723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 197
Target Start/End: Original strand, 52965768 - 52965897
Alignment:
Q  67 tgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacc 166  Q
    |||||||| | ||||||||||| || | || ||||||| |||||||||| || |||| ||||||||||||| ||||| || | |||||||||||||||||    
T  52965768 tgggtttgtccaaacccacccaatagtatatcgggtgggtattttacctcacccaaatcggagtaccctatttggtttggtt-ttgggtttggccaaacc 52965866  T
Q  167 caacccaaaccaacccacttacacccctagt 197  Q
    ||||||||||| ||||||  |||||||||||    
T  52965867 caacccaaacccacccacgaacacccctagt 52965897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 8262695 - 8262529
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| |||| || |||||||| ||||||||| ||||| || || |  | ||| || ||  |||||||||| || ||||| |    
T  8262695 gggtaacccattacccaatccaacccaacccagaaattaacgggtttgcccaaaccaacacaatggtataatggatgtttattttacctcacccaaactg 8262596  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccc 193  Q
    ||| |||||||||||||  |||  |||||||||||||||||||||||||| | ||||| ||||||||    
T  8262595 gagcaccctatatggtttaggttctgggtttggccaaacccaacccaaactagcccacgtacacccc 8262529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 168
Target Start/End: Original strand, 52498927 - 52499052
Alignment:
Q  43 aacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggt 142  Q
    ||||||| |||||||||||| || |||||||||| |||||||||||||||| |||  ||||||  |||||||  || |||| ||||||| | |||||| |    
T  52498927 aacccaacccaaaccggaaactagtgggtttgcccaaacccacccattaatataataggtggactttttaccgcacccaaatcggagtatcttatatgat 52499026  T
Q  143 tcgggtcttgggtttggccaaaccca 168  Q
    |||||| ||||||||  |||||||||    
T  52499027 tcgggttttgggtttaaccaaaccca 52499052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 15042604 - 15042768
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||| ||||| |||||||||| ||||||| ||| | | |||||||||| |||||  | || || | ||| || ||| |||||||||| || |||||      
T  15042604 gggtaaaccactacccaacccaatccaaaccagaattcagtgggtttgcccaaaccggctcaatagtgtaatggatggttattttacctcac-caaacta 15042702  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccc 192  Q
    ||||| ||||||||| | |||||||||||  ||||||| ||||||||||||| ||||  |||||||    
T  15042703 gagtatcctatatggattgggtcttgggtaaggccaaatccaacccaaaccagcccatgtacaccc 15042768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 40949115 - 40949038
Alignment:
Q  107 attttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccac 184  Q
    ||||||||| || |||| || |||| ||||||||||| ||||||||| |||||||||||||||| |||||| ||||||    
T  40949115 attttacctcacccaaatcgaagtatcctatatggtttgggtcttggatttggccaaacccaactcaaaccgacccac 40949038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 11345807 - 11345857
Alignment:
Q  125 cggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaa 175  Q
    ||||||||| |||||| |||||||||||||||||||||||| |||||||||    
T  11345807 cggagtaccttatatgattcgggtcttgggtttggccaaactcaacccaaa 11345857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 177
Target Start/End: Complemental strand, 31108759 - 31108707
Alignment:
Q  125 cggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaacc 177  Q
    ||||||||| |||||||||| ||||||| ||||||||||||||||||| ||||    
T  31108759 cggagtaccttatatggttcaggtcttgagtttggccaaacccaaccccaacc 31108707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 7840978 - 7841039
Alignment:
Q  121 aaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaaccca 183  Q
    |||||| || ||||||| ||||| || | |||||||||||||||||||||||||||| |||||    
T  7840978 aaaccgaagaaccctatttggtttggtt-ttgggtttggccaaacccaacccaaacccaccca 7841039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 14795972 - 14796167
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  14795972 catttcatattaacaaaaaaaaatttgggtaacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgg 14796071  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  14796072 gtggatattttacctaacccaaaccggagtaccctatatagttcgggtcttgggtttgaccaaacccaacccaaatcaacccacttacacccctag 14796167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 14804846 - 14805041
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||||||||||| |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  14804846 catttcatattaacaaaaaaaaatttgggtaacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgg 14804945  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||    
T  14804946 gtggatattttacctaacccaaaccggagtaccctatatagttcgggacttgggtttgaccaaacccaacccaaatcaacccacttacacccctag 14805041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 21969276 - 21969470
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        || ||||||||| ||||||| || |||||||| |||||| ||| |||||| |||||||||||||||||||||||    
T  21969276 catttcatattaacaaaaaaaaaattggataacccactacccaaccgaaaccaaaccgaaaattagtggatttgcccaaacccacccattaatttaacgg 21969375  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  21969376 gtggatattttacctaacccaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaatcaacccacttacaccccta 21969470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 8059591 - 8059760
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| ||||||||||  |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8059591 gggtaacccactacccaacccaaatcaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccg 8059690  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||    
T  8059691 gagtaccctatatggtttgggtcttgggtttggccaaacccaacccaaatcgacccactcacacccctag 8059760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 19584608 - 19584418
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgccc-aacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacg 99  Q
    ||||||||||||||||||        ||||||||| |||||| ||||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  19584608 catttcatattaacaaaaaaaaatttgggtaacccgctgccccaacccaaaccaaaccggaaattagtgggtttgcccaaacccactcattaatttaacg 19584509  T
Q  100 ggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacac 190  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||    
T  19584508 ggtggatattttacctaacccaaaccggagtaccctatatggttcggatcttgggtttgaccaaacccaacccaaatcaacccacttacac 19584418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 31200123 - 31199929
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||||||||||| |||||||||| ||||||||||||||| |||||||| | |||||||||||||||| ||||||    
T  31200123 catttcatattaacaaaaaaaaaattgggtaacccactacccaacccaaaccaaaccggaaattagtgggtttgtccaaacccacccattaatctaacgg 31200024  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||    
T  31200023 gtggatattttacctaacccaaaccggaataccttatatggttcgggtcttgggtttggctaaacccaacccaaatcgacccacgtacaccccta 31199929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 51250778 - 51250612
Alignment:
Q  30 taacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggag 129  Q
    |||||||||  ||| ||||| |||||||| |||||| ||||||||||||||| |||||||||||||||||| || |||||||||||||| |||| |||||    
T  51250778 taacccactatccagcccaaaccaaaccgaaaattagtgggtttgcctaaactcacccattaatttaacggatgaatattttacctaacccaaatcggag 51250679  T
Q  130 taccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51250678 taccctatatggttcgggtcttgggtttggccaaacccaacccaaatcaacccacttacacccctag 51250612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 40710132 - 40710300
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||     
T  40710132 gggtaacccactacccaacccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaacca 40710231  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    || |||  ||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  40710232 gaatactgtatatggttcgggtcttgggtttagccaaacccaacccaaatcgacccacttacaccccta 40710300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 50050340 - 50050505
Alignment:
Q  30 taacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggag 129  Q
    ||||||||| |||||||||| | ||||||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||| |||||||||     
T  50050340 taacccactacccaacccaaacaaaaccggaaattagtgggtttgtccaaactcacccattaatttaacgggtggatattttacctaacccaaaccggaa 50050439  T
Q  130 taccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    || ||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||||||    
T  50050440 tatcctatatggttcgggtcttgggtttggccaaacccaacccaaatcgatccacgtacaccccta 50050505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 38036476 - 38036624
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||  |||||| ||| |||||||| ||| || |||||||||| |||| || |||||||| |||| ||||||  |||||||| || |||||||    
T  38036476 gggtaacccacaacccaacgcaaaccaaaccgaaaactagtgggtttgcccaaactcatccattaatataacaggtggacgttttacctcacccaaaccg 38036575  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaa 175  Q
     |||| ||||||||||| ||||||| |||||||||||||||||||||||    
T  38036576 aagtatcctatatggtttgggtcttaggtttggccaaacccaacccaaa 38036624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 1246826 - 1246993
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| |||| ||  |||||| |||||||||| ||| ||||||| || | |||||||||| ||||||| || ||  ||||||    
T  1246826 gggtaacccattacccaatccaacccaacccaaaaattagtgggtttgcccaaatccacccaatagtataacgggtggttattttatctcacctaaaccg 1246925  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
     ||||| |||| ||||| || |||||||||||||||||||||||||||||| ||||||  |||||||||    
T  1246926 aagtacactatttggtttgg-tcttgggtttggccaaacccaacccaaacctacccacgaacaccccta 1246993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 7145662 - 7145495
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| |||| ||  |||||| |||||||||| ||| ||||||| || | |||||||||| ||||||| || ||  ||||||    
T  7145662 gggtaacccattacccaatccaacccaacccaaaaattagtgggtttgcccaaatccacccaatagtataacgggtggttattttatctcacctaaaccg 7145563  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
     ||||| |||| ||||| || |||||||||||||||||| ||||||||||| ||||||  |||||||||    
T  7145562 aagtacactatttggtttgg-tcttgggtttggccaaactcaacccaaacccacccacgaacaccccta 7145495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 40 - 196
Target Start/End: Complemental strand, 15836643 - 15836488
Alignment:
Q  40 cccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatat 139  Q
    ||||||||||  ||||||| ||  || ||| ||||||||||||||||||||||| |||||||||||  ||||  || ||  ||||||||||| ||||| |    
T  15836643 cccaacccaaatcaaaccgaaagctagtggatttgcctaaacccacccattaatataacgggtggacgttttttctcacctaaaccggagtatcctat-t 15836545  T
Q  140 ggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    | |||||||||||||||| |||||||||| |||||| | ||||||  ||||||||||    
T  15836544 gattcgggtcttgggtttagccaaacccagcccaaatccacccacgaacacccctag 15836488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 32829506 - 32829339
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| | || |||| ||  |||||| ||| |||| | ||||||||||| || | ||||| |||| |||||||||| || |||||||    
T  32829506 gggtaacccattacccaatctaacccaacccaaaaattagtggatttgtccaaacccacccaatagtataacgagtggttattttacctcacccaaaccg 32829407  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    ||||| ||||| |||||  ||| |||||||||||||||||||||||||||| ||||||  ||||||||||    
T  32829406 gagtagcctatttggtt-tggttttgggtttggccaaacccaacccaaacc-acccacgaacacccctag 32829339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 5972936 - 5972872
Alignment:
Q  131 accctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||    
T  5972936 accctatatggttcgggtcttgggtttggccaaactcaactcaaatcaacccacttacaccccta 5972872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 39331165 - 39331333
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    ||||||||||   |||||||||| |||||||| ||| || |||||||| | ||||||| |||||||| |||||| ||||  |||||||| || ||||||     
T  39331165 gggtaacccataacccaacccaaaccaaaccgaaaactagtgggtttgtccaaacccaaccattaatataacggatggacgttttacctcacccaaacca 39331264  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||| | ||||| |||| | ||||||||||| | |||||||  ||||||| ||||||  |||||||||    
T  39331265 gagtatcatatatagttcagatcttgggtttgacaaaacccagtccaaacccacccacgaacaccccta 39331333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 220610 - 220491
Alignment:
Q  78 aaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaacc 177  Q
    |||| ||||||||||| |||  |||||||||||||||| ||  ||||||||||| || ||||| ||||| |||||||||| | |||||||| ||||||||    
T  220610 aaactcacccattaatataataggtggatattttacctcacctaaaccggagtatcccatatgattcggatcttgggtttagtcaaacccagcccaaacc 220511  T
Q  178 aacccacttacacccctagt 197  Q
     |||||| | ||||||||||    
T  220510 cacccacgtgcacccctagt 220491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 196
Target Start/End: Original strand, 31964295 - 31964386
Alignment:
Q  106 tattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaacc-aacccacttacacccctag 196  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||||| |||| |||||| |||| || |||||||||||    
T  31964295 tattttacctcactcaaaccggagtaccctatatggttcgagttttgggtttggtcaaacacaactcaaaccgaacctacgtacacccctag 31964386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 26262313 - 26262189
Alignment:
Q  60 aaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttgg 159  Q
    ||||||| ||||||||| ||||||| ||| | || ||||  |||  |||||||||| || |||||| ||||||| ||||||||| | || ||||||| ||    
T  26262313 aaattaacgggtttgcccaaacccatccaatgatataacatgtgattattttacctcacccaaaccagagtaccttatatggtttgagttttgggttggg 26262214  T
Q  160 ccaaacccaacccaaaccaacccac 184  Q
    |||||||||||||||||| ||||||    
T  26262213 ccaaacccaacccaaaccgacccac 26262189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 29030554 - 29030387
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    ||||| ||| || ||||||| || |||||| | |||||| |||||||||  ||| ||| | |||||| |||| | |||| ||||||||| || |||| |     
T  29030554 gggtaccccgctacccaacctaaaccaaactgaaaattagtgggtttgctcaaatccatctattaatataacag-tggacattttacctcacccaaatca 29030456  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
     |||||| |||||||||| |||||||||||||||||||| ||| ||||| | |||||| ||||||||||    
T  29030455 aagtaccttatatggttcaggtcttgggtttggccaaactcaatccaaatcgacccacgtacaccccta 29030387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 17190061 - 17190156
Alignment:
Q  95 taacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacac 190  Q
    |||||||||| ||||| ||||  | |||| | ||||||| |||||| ||||||| || ||||||| ||||||||||||||||| |||||| |||||    
T  17190061 taacgggtggttatttcacctctcccaaatccgagtaccttatatgattcgggttttaggtttggtcaaacccaacccaaaccgacccacgtacac 17190156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 101 - 195
Target Start/End: Complemental strand, 43312795 - 43312701
Alignment:
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||| |||||||||| ||||||| || | |||  |||||||||  ||| ||||||||| |||||||||||||||||| || ||| ||||||||||    
T  43312795 gtggttattttacctcactcaaatcgaaatactttatatggtttaggttttgggtttgaccaaacccaacccaaaccgactcacgtacaccccta 43312701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 128
Target Start/End: Original strand, 14293966 - 14294051
Alignment:
Q  43 aacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccgga 128  Q
    ||||||| ||||||| |||| || |||||||||  |||||||||||||||| |||||||||||  |||||||| || | |||||||    
T  14293966 aacccaaaccaaaccagaaactagtgggtttgctcaaacccacccattaatataacgggtggacgttttacctcaccccaaccgga 14294051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 28882020 - 28881906
Alignment:
Q  62 attaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggcc 161  Q
    |||| |||||||||| ||||||||||| || | || ||||||  |||||||||| || |||||||||||| ||||| ||||       |||| ||||| |    
T  28882020 attagtgggtttgcccaaacccacccaatagtata-cgggtgattattttacctcacccaaaccggagtatcctatttggt-------ttggttttggtc 28881929  T
Q  162 aaacccaacccaaaccaacccac 184  Q
    |||||||||||||||| ||||||    
T  28881928 aaacccaacccaaacccacccac 28881906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 46271568 - 46271508
Alignment:
Q  117 actcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaacc 177  Q
    |||||||||  | |||||||||||||||||||||||||||||  |||| |||||| |||||    
T  46271568 actcaaaccaaactaccctatatggttcgggtcttgggtttgatcaaatccaacctaaacc 46271508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 14940047 - 14940148
Alignment:
Q  95 taacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccct 194  Q
    |||||||||| |||||||| | || ||||||| |||||| ||| ||||| || | ||| |||||||||||  |||| |||||| ||||||  ||||||||    
T  14940047 taacgggtggttattttacttcacccaaaccgaagtaccgtatttggtttggtt-ttgagtttggccaaaatcaactcaaacccacccacgaacacccct 14940145  T
Q  195 agt 197  Q
    |||    
T  14940146 agt 14940148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 14950054 - 14950155
Alignment:
Q  95 taacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccct 194  Q
    |||||||||| |||||||| | || ||||||| |||||| ||| ||||| || | ||| |||||||||||  |||| |||||| ||||||  ||||||||    
T  14950054 taacgggtggttattttacttcacccaaaccgaagtaccgtatttggtttggtt-ttgagtttggccaaaatcaactcaaacccacccacgaacacccct 14950152  T
Q  195 agt 197  Q
    |||    
T  14950153 agt 14950155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 14954295 - 14954396
Alignment:
Q  95 taacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccct 194  Q
    |||||||||| |||||||| | || ||||||| |||||| ||| ||||| || | ||| |||||||||||  |||| |||||| ||||||  ||||||||    
T  14954295 taacgggtggttattttacttcacccaaaccgaagtaccgtatttggtttggtt-ttgagtttggccaaaatcaactcaaacccacccacgaacacccct 14954393  T
Q  195 agt 197  Q
    |||    
T  14954394 agt 14954396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 30806407 - 30806348
Alignment:
Q  135 tatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||| ||||||||| |||| ||||| || |||||||| |||||| ||||||||||    
T  30806407 tatatggttcaggtcttggg-ttgggcaaactcagcccaaaccgacccacgtacaccccta 30806348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 139; Significance: 8e-73; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 22416610 - 22416440
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||    
T  22416610 gggtaacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatatttgaccaaacccaaaccg 22416511  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22416510 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaatcaacccacttacacccctagt 22416440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 30357387 - 30357582
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||||||||||   ||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||    
T  30357387 catttcatattaacaaaaaaaaaattgggtaacccaccatccaacccaaaccaaaccggaaattagtgggtttgcccaaacccatccattaatttaacgg 30357486  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  30357487 gtggatattttacctaacccaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaatcgacccacttacacccctag 30357582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 34899330 - 34899164
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  34899330 gggtaacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacggatggatattttacctaacccaaaccg 34899231  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccc 193  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  34899230 gagtaccctatatagtttgggtcttgggtttggccaaacccaacccaaatcgacccacttacacccc 34899164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 8423835 - 8424005
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||   ||||||||| |||||||| ||| || |||||||| | | ||||||||| |||| |||||| |||| ||||||||| || |||||||    
T  8423835 gggtaacccaccatccaacccaaaccaaaccgaaaactagtgggtttgtccagacccacccagtaatataacggatggacattttacctcacccaaaccg 8423934  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||| |||||| |||||    
T  8423935 gagtactctatatggttcgggttttgggtttggtcaaacccaacccaaacccacccacgtacacctctagt 8424005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 27451672 - 27451840
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    ||||||| |||  |||||| ||| |||||||| ||| || || |||| || |||||||||||||||| ||| |||||||  |||||||| || ||||| |    
T  27451672 gggtaactcacaacccaactcaaaccaaaccgaaaactagtgagttttcccaaacccacccattaatataatgggtggacgttttacctcacccaaactg 27451771  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||  |||||||||    
T  27451772 gagtatcctatatggttcgggtcttgggtttggccaaacccaatccaaacccacccacgaacaccccta 27451840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 37576003 - 37576133
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||| ||||||| |||||||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  37576003 catttcatattaacaaaaaaaaatttgggtgacccactacccaacccaaaccaaaccggaaattaatgggtttgtccaaacccatccattaatttaacgg 37576102  T
Q  101 gtggatattttacctaactcaaaccggagta 131  Q
    ||| |||||||||||||| ||||||||||||    
T  37576103 gtgaatattttacctaacccaaaccggagta 37576133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 195
Target Start/End: Original strand, 10789141 - 10789214
Alignment:
Q  122 aaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10789141 aaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaatcaacccacttacaccccta 10789214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 17473779 - 17473613
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| ||||| |||| |||||||| |||||| || |||| || |||| ||||||||||| ||||||||||| |||  |||| ||  ||||||    
T  17473779 gggtaacccactacccaatccaaaccaaaccgaaaattagtgagtttacccaaactcacccattaatataacgggtggacatt--acctcaccgaaaccg 17473682  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    | ||||| ||||||||| | ||||||||||||||||||| || |||||| | |||||| ||||||||||    
T  17473681 gggtaccttatatggtttgagtcttgggtttggccaaactcagcccaaatcgacccacgtacaccccta 17473613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 36441384 - 36441261
Alignment:
Q  60 aaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttgg 159  Q
    ||||||||| ||||||||||||||||||| || | |||||||||| |||||||||| || |||||||||||||| ||| |||||  ||| ||||||||||    
T  36441384 aaattaatgagtttgcctaaacccacccaatagtataacgggtggttattttacctcacccaaaccggagtaccttatttggtt-tggttttgggtttgg 36441286  T
Q  160 ccaaacccaacccaaaccaacccac 184  Q
    ||||| |||||||||||| ||||||    
T  36441285 ccaaatccaacccaaacccacccac 36441261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 20565336 - 20565503
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| | || ||  |||||| |||||||||| ||||||||||| || | |||||||||| |||||||||  || ||||| |    
T  20565336 gggtaacccattacccaatccaacctaacccaaaaattagtgggtttgcccaaacccacccaatagtataacgggtggttattttaccccacccaaactg 20565435  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||||||||| ||  | |||| |||| |||||||||| |||||||||||| ||||||  |||||||||    
T  20565436 gagtaccctatttgaattgggt-ttggatttggccaaatccaacccaaacccacccacgaacaccccta 20565503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 10789089 - 10789140
Alignment:
Q  93 tttaacgggtggatattttacctaactcaaaccggagtaccctatatggttc 144  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10789089 tttaacgggtggatattttacctaacccaaaccggagtaccctatatggttc 10789140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 195
Target Start/End: Original strand, 37576248 - 37576303
Alignment:
Q  140 ggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  37576248 ggttcggttcttgggtttggccaaacccaacccaaatcaacccacttacaccccta 37576303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 197
Target Start/End: Complemental strand, 18765215 - 18765085
Alignment:
Q  60 aaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttgg 159  Q
    |||||| |||||||||| ||||||||||| || | |||||||||| |||||||||| || |||||||||||||| ||| || |       |||| |||||    
T  18765215 aaattagtgggtttgcccaaacccacccaatagtataacgggtggttattttacctcacccaaaccggagtaccatatttgat-------ttggttttgg 18765123  T
Q  160 ccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||| ||||||| |||||   |||||||||||    
T  18765122 ccaaacccaaaccaaacccacccaagaacacccctagt 18765085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 17206233 - 17206400
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| |||| ||  |||||| || ||||||| |||| ||| || || | |||||| ||  |||||||||| || ||||| |    
T  17206233 gggtaacccattacccaatccaacccaacccaaaaattagtgagtttgcccaaactcactcaatagtataacggatgattattttacctcacccaaactg 17206332  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||| |||| ||||| || ||||||||||| |||||  ||||||||||| | ||||  |||||||||    
T  17206333 gagtactctatttggtttgg-tcttgggtttgaccaaattcaacccaaacccatccacaaacaccccta 17206400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 16749362 - 16749299
Alignment:
Q  134 ctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||| |||||  || |||||||||    
T  16749362 ctatatggttcgggttttgggtttggccaaactcaatccaaaccgacccatgtatacccctagt 16749299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 8371573 - 8371620
Alignment:
Q  95 taacgggtggatattttacctaactcaaaccggagtaccctatatggt 142  Q
    ||||||||||| ||||||||| || ||||||||||||| |||||||||    
T  8371573 taacgggtggacattttacctcacccaaaccggagtactctatatggt 8371620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 5702713 - 5702603
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| ||||  ||| ||  |||||| || ||||||||||||||| ||| || | |||| | ||  |||||||||| ||||||||||    
T  5702713 gggtaacccattacccaatccaactcaacccaaaaattagtgagtttgcctaaacccatccaatagtataacagatgattattttacctcactcaaaccg 5702614  T
Q  127 gagtaccctat 137  Q
     ||||||||||    
T  5702613 aagtaccctat 5702603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 36107219 - 36107050
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    ||||||||||||  ||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36107219 gggtaacccactatccaacccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccg 36107120  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  36107119 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaatcgacccacttacacccctag 36107050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 24954409 - 24954241
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||    
T  24954409 gggtaacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaatccaaaccg 24954310  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||||| |||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||    
T  24954309 gagtaccttatatggttcgggtcttgggtttgtccaaacccaatccaaatcaacccacttacaccccta 24954241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 33439039 - 33439233
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||||||||||| ||||| |||| ||||||||||||| | |||||||||| |||||||||||||||||||||||    
T  33439039 catttcatattaacaaaaaaaattgtgggtaacccactacccaatccaaaccaaaccggaaatgagtgggtttgcccaaacccacccattaatttaacgg 33439138  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  33439139 gtggatattttaccaaacccaaaccggagtatcctatatggttcgggtcttaggtttggccaaacccaacccaaatcaacccacttacaccccta 33439233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 40210586 - 40210756
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||| |||||||    
T  40210586 gggtaacccactacccaacccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtgaatattttaccaaacccaaaccg 40210685  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||    
T  40210686 gagtaccctatatgattcgggtcttgggtttgaccaaatccaacccaaatcaacccatttacacccctagt 40210756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 41986879 - 41986711
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||| ||| |||||||| |||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||      
T  41986879 gggtaacccactacccaactcaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggcggatattttacctaacccaaacta 41986780  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||| ||||||||||||| || |||||||| | ||||||||||||||| | |||||||||||||||||    
T  41986779 gagtatcctatatggttcgagttttgggtttagtcaaacccaacccaaatcgacccacttacaccccta 41986711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 10461554 - 10461722
Alignment:
Q  29 gtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccgga 128  Q
    |||||||||| |||||||||| ||||  ||||||||| ||||||| || |||||  |||| || |||||||| |||| ||||||||| || |||||||||    
T  10461554 gtaacccactacccaacccaacccaactcggaaattagtgggtttacccaaaccggcccaatagtttaacggatggacattttacctcacccaaaccgga 10461653  T
Q  129 gtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10461654 gtaccctatatggtttgggttttgggtttggccaaacccaacccaaaccggcccacttacacccctagt 10461722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 32538152 - 32537982
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| ||||| | ||  ||||||| ||| || ||| |||| | |||| ||||||||||| ||| ||||||| ||||||||| ||||||||||    
T  32538152 gggtaacccactacccaatctaaaacaaaccgaaaactagtggatttgtccaaactcacccattaatataatgggtggacattttacctcactcaaaccg 32538053  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||||||||||| |||||||||||||  ||||||||||| ||||  | |||| ||||| ||||||    
T  32538052 gagtaccctatatggttcaggtcttgggtttgatcaaacccaacctaaactcatccacgtacactcctagt 32537982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 37633068 - 37633237
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| ||||||| || |||||||| ||| || |||||||| | |||| ||||||||||| |||  |||||| ||| ||||| || |||||||    
T  37633068 gggtaacccactacccaaccaaaaccaaaccgaaaactagtgggtttgtccaaactcacccattaatataataggtggacattctacctcacccaaaccg 37633167  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    || ||||||||||| ||||||| |||||||||| ||||||||||||||| | |||||  | |||||||||    
T  37633168 gaataccctatatgattcgggtattgggtttggtcaaacccaacccaaatccacccagatgcacccctag 37633237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 184
Target Start/End: Original strand, 3407915 - 3408059
Alignment:
Q  40 cccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatat 139  Q
    |||||||||| |||||||||||| || ||| ||||  |||||||| |||||||| ||| |||||||  ||||||   || |||||| ||||| |||||||    
T  3407915 cccaacccaaaccaaaccggaaactagtggatttgtttaaacccatccattaatataaagggtggacgttttactacacccaaacctgagtatcctatat 3408014  T
Q  140 ggttcgggtcttgggtttggccaaacccaacccaaaccaacccac 184  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||    
T  3408015 ggttcgggtcttgggtttggtcaaacccagcccaaacccacccac 3408059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 183
Target Start/End: Complemental strand, 44959327 - 44959184
Alignment:
Q  40 cccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatat 139  Q
    |||||||||| |||||||||||| || |||||||||  |||||||||| ||||| |||| ||||||  |||||||| || |||||||||||| |||||||    
T  44959327 cccaacccaacccaaaccggaaactattgggtttgctcaaacccaccccttaatataacaggtggacgttttacctcacccaaaccggagtatcctatat 44959228  T
Q  140 ggttcgggtcttgggtttggccaaacccaacccaaaccaaccca 183  Q
     ||| |||||||| |||||  ||||| ||||||||||| |||||    
T  44959227 agtttgggtcttgagtttgatcaaacacaacccaaacccaccca 44959184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 24685077 - 24684930
Alignment:
Q  30 taacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggag 129  Q
    ||||||| | ||||| |||| |||| || |||||||||||||||||| ||||||| ||||      ||||| ||| |||||||||| ||  ||| |||||    
T  24685077 taacccattacccaatccaacccaatcctgaaattaatgggtttgcccaaacccatccat------aacggatggttattttacctcacctaaatcggag 24684984  T
Q  130 taccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaaccca 183  Q
    |  ||||| |||||||||| |||||||||||||||||||||||||||| |||||    
T  24684983 tctcctatgtggttcgggttttgggtttggccaaacccaacccaaaccgaccca 24684930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 28363231 - 28363151
Alignment:
Q  88 attaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaaccca 168  Q
    |||||| |||||||||||  ||||| || || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28363231 attaatataacgggtggacgttttatctcacccaaaccggagtatcctatatggttcgggtcttgggtttggccaaaccca 28363151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 183
Target Start/End: Complemental strand, 16279307 - 16279165
Alignment:
Q  41 ccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatg 140  Q
    ||||||||| ||||| |||||| || || |||| || |||| ||||||||||| |||| |||| |  |||||||| || ||||||||| || | ||||||    
T  16279307 ccaacccaaaccaaatcggaaactagtgagtttccccaaactcacccattaatataacaggtgaacgttttacctcacccaaaccggaatatcatatatg 16279208  T
Q  141 gttcgggtcttgggtttggccaaacccaacccaaaccaaccca 183  Q
    ||| ||||||| |||||||| ||||||| |||||||| |||||    
T  16279207 gtttgggtcttaggtttggcaaaacccagcccaaacccaccca 16279165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 3935929 - 3935881
Alignment:
Q  120 caaaccggagtaccctatatggttcgggtcttgggtttggccaaaccca 168  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3935929 caaaccggagtatcctatatggttcgggtcttgggtttggccaaaccca 3935881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 49105884 - 49105955
Alignment:
Q  60 aaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagta 131  Q
    ||||||||||||||||| ||||||||||| || | |||| ||||| |||||||||| || ||||| ||||||    
T  49105884 aaattaatgggtttgcccaaacccacccaatagtataactggtggttattttacctcacccaaactggagta 49105955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 3936772 - 3936706
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaat 93  Q
    |||||||||||  |||||||||| ||||| || ||| ||| ||||||||| ||||||||||||||||    
T  3936772 gggtaacccacaacccaacccaaaccaaagcgaaaactaaagggtttgcccaaacccacccattaat 3936706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 25981167 - 25981067
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||  ||||| ||||  |||||| ||||||| |||||||||  ||||| ||||| |||| |||| ||||| |||||||| | || |||||||    
T  25981167 gggtaacccaccacccaatccaactcaaaccagaaattagtgggtttgctcaaaccgacccaataatataacaggtggttattttacttcacccaaaccg 25981068  T
Q  127 g 127  Q
    |    
T  25981067 g 25981067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 33130459 - 33130345
Alignment:
Q  61 aattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggc 160  Q
    ||||| |||||||| | ||||| ||| | |||| |||||  ||  |||||||| | |||||||||| |||| | |||||| ||||||| ||||||||||     
T  33130459 aattagtgggtttgtcaaaaccgaccaaataatataacgaatgattattttacttcactcaaaccgaagtatcatatatgattcgggttttgggtttggt 33130360  T
Q  161 caaacccaacccaaa 175  Q
     || |||||||||||    
T  33130359 taagcccaacccaaa 33130345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 23237568 - 23237496
Alignment:
Q  123 accggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||| |||||||||||||| | || |||||||||| | ||| ||||||||||  || ||| ||||||||||    
T  23237568 accggattaccctatatggtttgagttttgggtttggtcgaactcaacccaaactgactcacgtacaccccta 23237496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 397028 - 396834
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||||||||||| |||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||    
T  397028 catttcatattaacaaaaaaaaaattgggtaacccactacccaacccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgg 396929  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||    
T  396928 gtggatattttacctaacccaaaccggagtaccctatatggttcgggtcttgggtttagccaaacccaacccaaatcgacccacttacaccccta 396834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 23722998 - 23722829
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| || ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23722998 gggtaacccactacctaacccaaaccaaaccggaaattaatgggtttgctcaaacccacccattaatttaacgggtggatattttacctaacccaaaccg 23722899  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||    
T  23722898 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaatcgacccacgtacacccctag 23722829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 42547191 - 42546997
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||||||||||| |||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||    
T  42547191 catttcatattaacaaaaaaaaaattgggtaacccactacccaacccaaaccaaaccagaaattagtgggtttgcccaaacccacccattaatttaacgg 42547092  T
Q  101 g-tggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccct 194  Q
    | ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | ||||||||||||||||    
T  42547091 ggtggatattttatctaacccaaaccggagtaccctatatggttcggatcttgggtttggccaaacccaatccaaatcgacccacttacacccct 42546997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 27925732 - 27925900
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||||||| |||||| || ||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  27925732 gggtaacccactacccaacccaaaccaaaccgaaaattagtgagtttgtccaaacccacccattaatttaacgggtggatattttaactaacccaaaccg 27925831  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||    
T  27925832 aagtaccctatatggttcgggtcttgggtttgaccaaacccaacccaaatcgacccacttacaccccta 27925900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 32951735 - 32951903
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    ||||||||||||| ||||||||| ||||||||||||||| |||||||| | ||||||||||||||||| || || ||||||||||||||||| ||||||     
T  32951735 gggtaacccactgtccaacccaaaccaaaccggaaattagtgggtttgtccaaacccacccattaattcaatggatggatattttacctaacccaaacca 32951834  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    || |||| |||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||    
T  32951835 gaataccttatatggttcgggtcttgggtttggctaaacccaacccaaatcgacccacgtacaccccta 32951903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 27 - 194
Target Start/End: Complemental strand, 26071150 - 26070983
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||| |||||||||| ||||||| || |||||  |||| || ||||||||||||| ||||||||| || |||||||    
T  26071150 gggtaacccactacccaacccaatccaacccggaaattagtgggtttacccaaaccggcccaatagtttaacgggtggacattttacctcacccaaaccg 26071051  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccct 194  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||||||||  |||||||||||||||    
T  26071050 gagtaccctatatggtatgggttttgggtttggccaaacccaacccaaaccggcccacttacacccct 26070983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 197
Target Start/End: Original strand, 43343042 - 43343193
Alignment:
Q  46 ccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcg 145  Q
    |||| |||||||||||| || |||||||| | |||||||||||||||| ||| |||||||  |||||||  || |||||||||||| | |||||||||||    
T  43343042 ccaaaccaaaccggaaactagtgggtttgtccaaacccacccattaatataatgggtggactttttaccacacccaaaccggagtatcttatatggttcg 43343141  T
Q  146 ggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||||| |||||| |||||||||||| ||||||  |||||||||||    
T  43343142 ggtcttgggtttagccaaatccaacccaaacccacccacgaacacccctagt 43343193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 11818768 - 11818919
Alignment:
Q  41 ccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatg 140  Q
    ||||||||| ||||||||||||||| |||||||  | ||||| ||||| |||| |||||||||  || ||||||| || |||||| ||||||| | ||||    
T  11818768 ccaacccaatccaaaccggaaattagtgggtttatccaaaccaacccaataatgtaacgggtgattactttacctcacccaaaccagagtaccttgtatg 11818867  T
Q  141 gttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccc 192  Q
    ||||  |||||| ||||| |||||||||| ||||| | |||||| |||||||    
T  11818868 gttcaagtcttgagtttgaccaaacccaatccaaatcgacccacgtacaccc 11818919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 16822127 - 16822260
Alignment:
Q  60 aaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttgg 159  Q
    |||||| |||||||| | ||||||||||| || | |||||||||| |||||| ||| || |||||||||||||||||| | ||| || |||||||||||     
T  16822127 aaattagtgggtttgtccaaacccacccaatagtataacgggtggttatttt-cctcacccaaaccggagtaccctatttagtttgg-tcttgggtttga 16822224  T
Q  160 ccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||||||||||| ||||||  |||||||||    
T  16822225 ccaaacccaacccaaacccacccacgaacaccccta 16822260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 27 - 193
Target Start/End: Original strand, 890906 - 891072
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    ||||| |||||  ||||| |||| |||||| ||||| || |||||||| | | |||||| || |||| ||| ||||||| ||||||||| || |||||||    
T  890906 gggtatcccaccacccaatccaaaccaaactggaaactagtgggtttgtccagacccactcagtaatataatgggtggacattttacctcacccaaaccg 891005  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccc 193  Q
     ||||  |||||| ||||| ||||| |||||||||||||||||| |||||  |||||| ||||||||    
T  891006 aagtattctatatagttcgagtcttaggtttggccaaacccaactcaaactcacccacgtacacccc 891072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 24221783 - 24221923
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| |||| ||  |||||| |||||||||| ||||| ||||| || | ||||| |||| |||||||||| ||||||||||    
T  24221783 gggtaacccattacccaatccaacccaacccaaaaattagtgggtttgcccaaacctacccaatagtataacgagtggttattttacctcactcaaaccg 24221882  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaaccca 168  Q
    ||||||||||| || ||  ||| ||||||||| |||||||||    
T  24221883 gagtaccctatttgatt-tggttttgggtttgaccaaaccca 24221923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 26688362 - 26688531
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||| | | ||||| |||| |||| ||  |||||| ||| |||||| ||||||||||| || | |||||||||| |||||||||| ||||||||||    
T  26688362 gggtaacctattacccaatccaacccaacccaaaaattagtggatttgcccaaacccacccaatagtataacgggtggttattttacctcactcaaaccg 26688461  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagtg 198  Q
    ||||| ||||| |||||  |   |||| |||||||||| ||||| |||||| | ||||  ||||||||||||    
T  26688462 gagtatcctatttggtttag--tttggatttggccaaatccaactcaaacccatccacgaacacccctagtg 26688531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 67 - 195
Target Start/End: Original strand, 39068611 - 39068738
Alignment:
Q  67 tgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacc 166  Q
    |||||||||| |||| ||| || || | |||||||||| |||||||||| || |||||||||| ||| ||| ||||| || | ||| |||||||||||||    
T  39068611 tgggtttgcccaaacacactcaatagtataacgggtggttattttacctcacccaaaccggagaaccttatttggtttggtt-ttgagtttggccaaacc 39068709  T
Q  167 caacccaaaccaacccacttacaccccta 195  Q
    ||||||||||| ||||||  |||||||||    
T  39068710 caacccaaacccacccacgaacaccccta 39068738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 41477586 - 41477416
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccat-taatttaacgggtggatattttacctaactcaaacc 125  Q
    |||||||||| | ||||| ||||  ||| ||  |||||| ||| |||||| ||||||| |||  || | |||||||||| |||||||||| || |||| |    
T  41477586 gggtaacccattacccaatccaacacaacccaaaaattagtggatttgcccaaacccatccaaatagtataacgggtggttattttaccttacccaaatc 41477487  T
Q  126 ggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||||| ||||| | || |||||||||| ||||| ||||||||||| ||||||  |||||||||||    
T  41477486 ggagtaccctatttggtttgagt-ttgggtttggtcaaactcaacccaaacccacccacgaacacccctagt 41477416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 184
Target Start/End: Original strand, 23185418 - 23185574
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| |||| ||  |||||| |||||||| | |||||| |||| || | ||||  |||| |||||||||| || |||||||    
T  23185418 gggtaacccattacccaatccaacccaacccaaaaattagtgggtttgtccaaacccgcccaatagtataacatgtggttattttacctcacccaaaccg 23185517  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccac 184  Q
    ||||| ||||| |||||  | | |||||||||||||||| ||||||||||| ||||||    
T  23185518 gagtatcctatttggtt-tgattttgggtttggccaaactcaacccaaacccacccac 23185574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 195
Target Start/End: Complemental strand, 15329346 - 15329250
Alignment:
Q  99 gggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||| |||||||||| |||||||| |||  ||||||||||||| |||| |||||||||  |||| |||||||||||  ||| || ||||||||||    
T  15329346 gggtggttattttacctcactcaaactggaaaaccctatatggtttgggttttgggtttgatcaaatccaacccaaactgacctacgtacaccccta 15329250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 34950202 - 34950152
Alignment:
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaacc 177  Q
    ||||||| ||||| ||||||||||||||||||||||||| |||||||||||    
T  34950202 gagtaccttatatagttcgggtcttgggtttggccaaactcaacccaaacc 34950152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 54578532 - 54578657
Alignment:
Q  30 taacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggag 129  Q
    ||||||||| |||||||||| |||||||| ||| || |||||||||| |||||||||||             |||| ||||||||| |  |||||||| |    
T  54578532 taacccactacccaacccaaaccaaaccgaaaactagtgggtttgcccaaacccaccca-------------tggacattttacctcatccaaaccgggg 54578618  T
Q  130 taccctatatggttcgggtcttgggtttggccaaaccca 168  Q
    |||||||||| ||||||||||||||||||  ||||||||    
T  54578619 taccctatatagttcgggtcttgggtttgatcaaaccca 54578657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 177
Target Start/End: Complemental strand, 7474370 - 7474288
Alignment:
Q  95 taacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaacc 177  Q
    |||||||||| ||||||| || ||||||||||||||| |||||||  |||| || || ||||||  |||||| ||||||||||    
T  7474370 taacgggtggttattttatctcactcaaaccggagtatcctatataattcgagttttaggtttgatcaaaccgaacccaaacc 7474288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 39420919 - 39420882
Alignment:
Q  196 gtgtagggtctttttctttgggtgtgagtagtgacgac 233  Q
    |||| |||||||||||||||||||||||||||||||||    
T  39420919 gtgttgggtctttttctttgggtgtgagtagtgacgac 39420882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 2208755 - 2208713
Alignment:
Q  150 ttgggtttggccaaacccaacccaaaccaacccacttacaccc 192  Q
    ||||||||||||||||||||||||||||  ||||| |||||||    
T  2208755 ttgggtttggccaaacccaacccaaaccggcccacgtacaccc 2208713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 30543784 - 30543675
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| |||| ||  |||||| |||||| | | ||||||||||| || | |||||| ||| |||||||||| |  |||||||    
T  30543784 gggtaacccattacccaatccaacccaacccaaaaatta-tgggttcgtccaaacccacccaatagtataacggatggttattttacctcatccaaaccg 30543686  T
Q  127 gagtaccctat 137  Q
    |||||||||||    
T  30543685 gagtaccctat 30543675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 9958399 - 9958327
Alignment:
Q  95 taacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaaccca 168  Q
    |||||||||| |||||||||| ||  |||||| || ||||||| ||||| || | |||||||||||||||||||    
T  9958399 taacgggtggttattttacctcaccgaaaccgaagaaccctatttggtttggtt-ttgggtttggccaaaccca 9958327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 28983930 - 28983890
Alignment:
Q  135 tatatggttcgggtcttgggtttggccaaacccaacccaaa 175  Q
    |||||| || |||||||||||| ||||||||||||||||||    
T  28983930 tatatgatttgggtcttgggttaggccaaacccaacccaaa 28983890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 23928384 - 23928552
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23928384 gggtaacccactacccaacccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccg 23928483  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  23928484 gaataccctatatggttcgggtcttgggtttgaccaaacccaacccaaatcaacccacttacaccccta 23928552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 196
Target Start/End: Original strand, 9889224 - 9889393
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9889224 gggtaacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaaccg 9889323  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| | |||||  |||||||||||    
T  9889324 gagtaccctatatggttcgggtctcgggtttggccaaacccaacccaaatcgacccatgtacacccctag 9889393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 29289883 - 29290053
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||| ||| |||||||| |||||| |||||||||| |||||||||| ||||||||||||||| |||||||| |||||  ||||||    
T  29289883 gggtaacccactacccaactcaaaccaaaccgaaaattagtgggtttgcccaaacccacccgttaatttaacgggtgaatattttatctaacctaaaccg 29289982  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  29289983 gagtactctatatggttcgggtcttgggtttggccaaacccaacccaaatcgacccacttacacccctagt 29290053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 40484432 - 40484264
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||||||| ||| || | |||||||| ||||||||||||||||| || ||||||| ||||||||| || |||||||    
T  40484432 gggtaacccactacccaacccaaaccaaaccgaaaactagttggtttgcccaaacccacccattaatt-aatgggtggacattttacctcacccaaaccg 40484334  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    ||||||||||||||||||| ||||||||||| | |||||||| ||||||||  ||||  |||||||||||    
T  40484333 gagtaccctatatggttcgagtcttgggtttagtcaaacccagcccaaacccgcccaggtacacccctag 40484264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 195
Target Start/End: Complemental strand, 34696423 - 34696268
Alignment:
Q  40 cccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatat 139  Q
    |||||||||| |||||||||||| || |||||||| | ||||||||| |||||| ||||||||||| ||||||||| || ||||||||| || | |||||    
T  34696423 cccaacccaacccaaaccggaaactagtgggtttgtccaaacccacctattaatataacgggtggacattttacctcacccaaaccggaatatcttatat 34696324  T
Q  140 ggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||| |||||| |||||||||||||||| |||||||| ||||||  |||||||||    
T  34696323 ggttcaggtcttaggtttggccaaacccagcccaaacccacccacgaacaccccta 34696268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 195
Target Start/End: Original strand, 35667876 - 35668041
Alignment:
Q  30 taacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggag 129  Q
    ||||||||  |||||||||| |||||||| ||| || |||||||| | | ||||||||| |||| |||||| || | ||||||||| || ||||||| ||    
T  35667876 taacccaccacccaacccaaaccaaaccgaaaactagtgggtttgtccagacccacccagtaatataacggatgaacattttacctcacccaaaccgcag 35667975  T
Q  130 taccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||| |||||||||| ||||||||| ||||| ||||| ||||||||||| |||||| ||||||||||    
T  35667976 tactctatatggtttgggtcttggatttggtcaaactcaacccaaacccacccacgtacaccccta 35668041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 14633908 - 14633751
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||| |||||  ||||||||| |||||||| |||||| ||| |||||| | |||||||||||||| ||| || |||| ||||||||| || |||||||    
T  14633908 gggtaatccactatccaacccaaaccaaaccgaaaattagtggatttgcccatacccacccattaatataatggatggacattttacctcacccaaaccg 14633809  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccac 184  Q
    ||||||| || ||| ||| | |||| ||||||| |||| |||||||||| | ||||||    
T  14633808 gagtaccatacatgattcagatcttaggtttggtcaaatccaacccaaatccacccac 14633751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 194
Target Start/End: Complemental strand, 26362756 - 26362604
Alignment:
Q  41 ccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatg 140  Q
    ||||||||| |||||| | ||| || |||||||| | |||||||||||||||| ||| || ||||  |||||||  |  ||||||||||||   ||||||    
T  26362756 ccaacccaaaccaaactgaaaactagtgggtttgtccaaacccacccattaatataatggatggactttttaccgcatccaaaccggagtatattatatg 26362657  T
Q  141 gttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccct 194  Q
    || |||||||||||||| ||||||||||| ||||||| ||||||  ||||||||    
T  26362656 gt-cgggtcttgggtttagccaaacccaatccaaacccacccacgaacacccct 26362604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 6011174 - 6011341
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| |||| ||  |||||| | |||||||| ||||||||||| |||| |||||||||| |||||||||| || ||||||     
T  6011174 gggtaacccattacccaatccaacccaacccaaaaattagtaggtttgcccaaacccacccaataatataacgggtggttattttacctcacccaaacca 6011273  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
     |||||| ||| | |||  ||| |||| ||| ||||||| |||| |||||| ||||||  |||||||||    
T  6011274 aagtaccttatttagtt-tggttttggatttagccaaactcaactcaaacccacccacaaacaccccta 6011341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 114
Target Start/End: Complemental strand, 10540176 - 10540102
Alignment:
Q  40 cccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacc 114  Q
    |||||||||| |||||||| ||| || |||||||||| |||||||||||||||| ||| || ||||  |||||||    
T  10540176 cccaacccaaaccaaaccgaaaactagtgggtttgcccaaacccacccattaatataatggttggactttttacc 10540102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 425739 - 425608
Alignment:
Q  60 aaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttgg 159  Q
    |||||| |||||||||| || || | ||| ||||  |||  |||| ||||||| || |||||||||| ||||| |||  || ||| | | |||||||| |    
T  425739 aaattagtgggtttgcccaacccaatccaataatgcaacatgtggttattttaactcactcaaaccgaagtacactaattgattcagatattgggtttag 425640  T
Q  160 ccaaacccaacccaaaccaacccacttacacc 191  Q
    |||||||||||||||||  |||||| ||||||    
T  425639 ccaaacccaacccaaactgacccacgtacacc 425608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 4421100 - 4421028
Alignment:
Q  95 taacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaaccca 168  Q
    ||||| |||| |||||||||| || ||||||| |||||||||| | ||| || | |||||||||||||||||||    
T  4421100 taacgagtggttattttacctcacccaaaccgaagtaccctatttagtttggtt-ttgggtttggccaaaccca 4421028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 7945781 - 7945824
Alignment:
Q  133 cctatatggttcgggtcttgggtttggccaaacccaacccaaacc 177  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||    
T  7945781 cctatttggttcggtt-ttgggtttggccaaacccaacccaaacc 7945824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 3100724 - 3100530
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        ||||||||||||  ||||||||| ||||||||||||||| ||||||||||  ||||||||||||||||||||||    
T  3100724 catttcatattaacaaaaaaaaatttgggtaacccactatccaacccaaaccaaaccggaaattagtgggtttgcccgaacccacccattaatttaacgg 3100625  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  3100624 gtggatattttacctaatccaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaatcaaaccacttacaccccta 3100530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 8770091 - 8769921
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  8770091 gggtaacccactacccaacccaaaccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttaccaaacccaaaccg 8769992  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8769991 gagtaccaaatatggttcgggtcttgggtttggccaaacccaacccaaatcaacccacttacacccctagt 8769921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 30125744 - 30125938
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        |||||||||||| |||||||||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||    
T  30125744 catttcatattaacaaaaaaaaatttgggtaacccactacccaacccaaaccaaaccagaaattagtgggtttgcccaaacccacccattaatttaacgg 30125843  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| |||||||||||||||||||    
T  30125844 gtggatattttacctaacccaaaccggagtaccctatatggttcgagtcttgggtttgaccaaatccaacccaaatcaacccacttacaccccta 30125938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 18999842 - 19000010
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||  |||||| ||| |||||||||| | || |||||||||| | ||||| ||| |||| ||||||||||| ||||||||| || ||||||     
T  18999842 gggtaacccaccacccaactcaaaccaaaccggacactagtgggtttgcccagacccatccaataatataacgggtggacattttacctcacccaaacca 18999941  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||| |||||| |||||| |||||||||||||||||||||||||||||| |||||| ||||||||||    
T  18999942 gagtactctatatagttcggatcttgggtttggccaaacccaacccaaacccacccacgtacaccccta 19000010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 31834526 - 31834694
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||  ||||||| |||| |||||||||| || |||||||||| |||| || ||||||||||||||| |||| ||||||||| |  |||| ||    
T  31834526 gggtaacccacaacccaaccgaagctaaaccggaaactagtgggtttgcccaaactcatccattaatttaacggatggacattttacctcatccaaatcg 31834625  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||| |||||||| |||| |||||  ||||| ||||||||||  |||||| ||||||  |||||||||    
T  31834626 gagtatcctatatgattcgagtcttaagtttgaccaaacccaattcaaacctacccacgaacaccccta 31834694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 189
Target Start/End: Complemental strand, 13601278 - 13601141
Alignment:
Q  51 ccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtct 150  Q
    |||||| ||||| || |||||||||| ||||||| |||||||| ||| || |||| ||||| | | || |||||| |||||| |||| ||||||||||||    
T  13601278 ccaaactggaaactagtgggtttgcccaaacccatccattaatataatggatggacatttttcttcacccaaaccagagtactctatgtggttcgggtct 13601179  T
Q  151 tgggtttggccaaacccaacccaaaccaacccacttaca 189  Q
    ||||||||| |||||||| |||||||| |||||| ||||    
T  13601178 tgggtttgg-caaacccagcccaaacccacccacgtaca 13601141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 17437190 - 17437312
Alignment:
Q  46 ccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcg 145  Q
    |||| |||||||| ||| || || ||||||| |||||||||||||||| |||| | ||||| |||||||| || |||||||||||  ||||||||||| |    
T  17437190 ccaacccaaaccgaaaactagtgagtttgcccaaacccacccattaatataacagatggatgttttacctcacacaaaccggagtttcctatatggttag 17437289  T
Q  146 ggtcttgggtttggccaaaccca 168  Q
    |||||| ||||||| ||||||||    
T  17437290 ggtctttggtttgggcaaaccca 17437312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 195
Target Start/End: Complemental strand, 23769931 - 23769830
Alignment:
Q  90 taatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttaca 189  Q
    |||||||||||||   |||||||||| ||||||||| |||||||||||||| || |||||| ||||| |||||||||||||||||||| | |||| ||||    
T  23769931 taatttaacgggt---tattttacctcactcaaaccagagtaccctatatgctttgggtctggggttcggccaaacccaacccaaaccga-ccacataca 23769836  T
Q  190 ccccta 195  Q
    ||||||    
T  23769835 ccccta 23769830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 6940099 - 6939931
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||||    || ||| || ||||| | ||| ||| |||||||| ||| || |||| |||||||   || |||||||    
T  6940099 gggtaacccactacccaacccaaaccaaattaaaatttagtgagtttgtccaaatccatccattaatataatggatggacattttacgccacccaaaccg 6940000  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||| |||||||| | ||| |||||| |||  |||||||||||||||||| |||||| || |||||||    
T  6939999 gagtatcctatatgatccggatcttggatttaaccaaacccaacccaaaccgacccacgtagaccccta 6939931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 195
Target Start/End: Complemental strand, 24261314 - 24261188
Alignment:
Q  68 gggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaaccc 167  Q
    ||||||||| ||||||||| || | | |||| ||||| | |||||||| || ||||||||||||  |||| ||||| |||| ||||||||  ||||||||    
T  24261314 gggtttgcccaaacccaccaatga-tataactggtggttgttttacctcacccaaaccggagtattctatgtggtttgggttttgggttttaccaaaccc 24261216  T
Q  168 aacccaaaccaacccacttacaccccta 195  Q
    |||||||||| |||||  ||||||||||    
T  24261215 aacccaaaccgacccatgtacaccccta 24261188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 195
Target Start/End: Complemental strand, 9606043 - 9605920
Alignment:
Q  71 tttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaac 170  Q
    |||||| ||||||||||| || | |||| | ||| |||||||||| || |||||| ||||||||||| | |||  ||| ||| ||||| ||||||||||     
T  9606043 tttgcccaaacccacccaatagtataacagatggttattttacctcacccaaacctgagtaccctatttagtt-tggttttgagtttgaccaaacccaaa 9605945  T
Q  171 ccaaaccaacccacttacaccccta 195  Q
    | ||||| ||||||  |||||||||    
T  9605944 ctaaacccacccacgaacaccccta 9605920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 34 - 196
Target Start/End: Original strand, 33365581 - 33365743
Alignment:
Q  34 ccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtacc 133  Q
    ||||| |||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||||||||||||  ||||||||||||||    
T  33365581 ccactacccaacccaaaccaaaccggaaattagtaggtttgcccaaacccacccattaatttaacgggtgaatattttacctaatccaaaccggagtacc 33365680  T
Q  134 ctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctag 196  Q
    ||||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||||||    
T  33365681 ctatatggttcgggtcttgggtttggccaaacctaactcaaatcaacccatttacacccctag 33365743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 44 - 197
Target Start/End: Original strand, 31628139 - 31628292
Alignment:
Q  44 acccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggtt 143  Q
    |||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||    
T  31628139 acccaacccaaaccgaaaattagtgggtttgcccaaacccacccattaatttaacgggtggatattttacctaacccaaactggagtatcctatatggtt 31628238  T
Q  144 cgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||||||| || |||||||||||||| | |||||||||||||||||||    
T  31628239 cgggtcttgggtttagctaaacccaacccaaatcgacccacttacacccctagt 31628292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 232537 - 232733
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        || ||||||||| |||||||||| ||||||||||||||| |||||||||| |||  ||||||||||||||||||    
T  232537 catttcatattaacaaaaaaaaaattggataacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaatgcacccattaatttaacgg 232636  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||| ||||||| ||||||||||||| ||||||  |||||||||||| |||| |||||||||||||||| | |||||| ||||||||||||    
T  232637 gtggatatttaacctaacccaaaccggagtactctatataattcgggtcttggatttgaccaaacccaacccaaatcgacccacgtacacccctagt 232733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 708948 - 709144
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        || ||||||||| |||||||||| ||||||||||||||| |||||||||| |||  ||||||||||||||||||    
T  708948 catttcatattaacaaaaaaaaaattggataacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaatgcacccattaatttaacgg 709047  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||| ||||||| ||||||||||||| ||||||  |||||||||||| |||| |||||||||||||||| | |||||| ||||||||||||    
T  709048 gtggatatttaacctaacccaaaccggagtactctatataattcgggtcttggatttgaccaaacccaacccaaatcgacccacgtacacccctagt 709144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 746160 - 746356
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        || ||||||||| |||||||||| ||||||||||||||| |||||||||| |||  ||||||||||||||||||    
T  746160 catttcatattaacaaaaaaaaaattggataacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaatgcacccattaatttaacgg 746259  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||| ||||||| ||||||||||||| ||||||  |||||||||||| |||| |||||||||||||||| | |||||| ||||||||||||    
T  746260 gtggatatttaacctaacccaaaccggagtactctatataattcgggtcttggatttgaccaaacccaacccaaatcgacccacgtacacccctagt 746356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 870055 - 870251
Alignment:
Q  1 catttcatattaacaaaannnnnnnngggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgg 100  Q
    ||||||||||||||||||        || ||||||||| |||||||||| ||||||||||||||| |||||||||| |||  ||||||||||||||||||    
T  870055 catttcatattaacaaaaaaaaaattggataacccactacccaacccaaaccaaaccggaaattagtgggtttgcccaaatgcacccattaatttaacgg 870154  T
Q  101 gtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagt 197  Q
    |||||||||| ||||||| ||||||||||||| ||||||  |||||||||||| |||| |||||||||||||||| | |||||| ||||||||||||    
T  870155 gtggatatttaacctaacccaaaccggagtactctatataattcgggtcttggatttgaccaaacccaacccaaatcgacccacgtacacccctagt 870251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 192
Target Start/End: Original strand, 3145 - 3309
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||||||| |||| | |||||||||| ||  |||| ||||||||||||||||| |||||||||||||| ||||||     
T  3145 gggtaacccactacccaacccaaaccaaaccg-aaatcagtgggtttgcccaattccactcattaatttaacgggtgaatattttacctaacccaaacca 3243  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccc 192  Q
    ||||||||| |||||||||||||||||||||||||||||| ||| |||| | |||||| |||||||    
T  3244 gagtaccctgtatggttcgggtcttgggtttggccaaacctaactcaaatcgacccacgtacaccc 3309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 51 - 195
Target Start/End: Complemental strand, 15004291 - 15004147
Alignment:
Q  51 ccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtct 150  Q
    |||| |||||||||| ||||||| || |||||  |||| || ||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |    
T  15004291 ccaacccggaaattagtgggtttacccaaaccagcccaatagtttaacgggtggatattttacctcacccaaaccggagtaccctatatggtttgggttt 15004192  T
Q  151 tgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||||||||||||||||||||||||  ||||||||||||||||    
T  15004191 tgggtttggccaaacccaacccaaaccggcccacttacaccccta 15004147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 22342934 - 22343101
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||| || ||||||| |||| || || ||||   |||| || ||||||||||||||||||||||| || |||||||    
T  22342934 gggtaacccactacccaacccaacccaacccagaaattagtgggcttacccaaactggcccaatagtttaacgggtggatattttacctcacccaaaccg 22343033  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  22343034 gagtaccctatatggtttgggttttgggtttggccaaacccaacccaaacc-gtccacttacaccccta 22343101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 27 - 195
Target Start/End: Original strand, 22354594 - 22354761
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||| |||||||||| |||| || ||||||| |||| || || ||||   |||| || ||||||||||||||||||||||| || |||||||    
T  22354594 gggtaacccactacccaacccaacccaacccagaaattagtgggcttacccaaactggcccaatagtttaacgggtggatattttacctcacccaaaccg 22354693  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||   |||||||||||||||    
T  22354694 gagtaccctatatggtttgggttttgggtttggccaaacccaacccaaacc-gtccacttacaccccta 22354761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 202
Target Start/End: Original strand, 37675294 - 37675468
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||||  |||||||||| | |||||||||  || |||||||||| |||||||||||||||| ||||||||| |  ||||| || |  ||||| |    
T  37675294 gggtaacccacaacccaacccaaactaaaccggaatctagtgggtttgcccaaacccacccattaatataacgggtg-acgttttatcttatccaaactg 37675392  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacccctagtgtagg 202  Q
    ||||| |||||||||||||||||||||||||||||||| |||  ||||||| ||||||  ||||||||||| ||||    
T  37675393 gagtatcctatatggttcgggtcttgggtttggccaaaaccagtccaaacccacccacgaacacccctagtttagg 37675468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 39918733 - 39918578
Alignment:
Q  29 gtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccgga 128  Q
    |||||||||  ||||||||||  ||||||||||| |||||||| |||| ||| |||||||||||| ||||||||||   |||||||| || ||||||  |    
T  39918733 gtaacccacaacccaacccaaatcaaaccggaaactaatgggtatgcccaaatccacccattaatataacgggtgggcgttttacctcacccaaaccaaa 39918634  T
Q  129 gtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccac 184  Q
    ||| ||||||| |||||||| |||| |||| ||||||||||| |||||| ||||||    
T  39918633 gtatcctatatagttcgggttttggatttgaccaaacccaactcaaacccacccac 39918578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 37780989 - 37780863
Alignment:
Q  42 caacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatgg 141  Q
    ||||||||  ||||||| ||| ||||||||||| | |||||||||||||||| |||||||||    |||||||| || |||| ||||||| |||||||||    
T  37780989 caacccaaatcaaaccgaaaactaatgggtttgtccaaacccacccattaatataacgggtgagcgttttacctcacccaaatcggagtatcctatatgg 37780890  T
Q  142 ttcgggtcttgggtttggccaaaccca 168  Q
    ||||||||||||||||| |||||||||    
T  37780889 ttcgggtcttgggtttgcccaaaccca 37780863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 195
Target Start/End: Original strand, 30233436 - 30233580
Alignment:
Q  51 ccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtct 150  Q
    |||||||| |||||| ||||||| || |||||   ||| || | |||||| ||  |||||||||| ||   |||||||||||||| ||||||||||||||    
T  30233436 ccaaaccgaaaattagtgggtttacccaaaccggtccaatagtataacggatgattattttacctcaccttaaccggagtaccctctatggttcgggtct 30233535  T
Q  151 tgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||    
T  30233536 tgggtttggtcaaacccaacccaaaccgacccacgtacaccccta 30233580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 27822685 - 27822558
Alignment:
Q  41 ccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatg 140  Q
    ||||||||| |||||||| ||| || |||||||| | |||||||||||||||| ||| ||||||| |||||| || |  ||||| | ||||||||||||     
T  27822685 ccaacccaaaccaaaccgaaaactagtgggtttgtccaaacccacccattaatataatgggtggacattttatctcaaccaaactgaagtaccctatata 27822586  T
Q  141 gttcgggtcttgggtttggccaaaccca 168  Q
     |||| |||||| |||||| ||||||||    
T  27822585 attcgagtcttgagtttggtcaaaccca 27822558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 41492490 - 41492399
Alignment:
Q  100 ggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacacc 191  Q
    ||||| |||||||||| ||  |||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||| ||| || ||||||    
T  41492490 ggtggttattttacctcacctaaaccggagtacactatatagttcgggttttgggtttggccaaccccaacccaaaccgacctacatacacc 41492399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 13248155 - 13248027
Alignment:
Q  67 tgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttggccaaacc 166  Q
    |||||||| | ||||||||||| || | ||||||  || |||||||| | |||| |||||||||| ||||| | |||  ||| ||||||||| |||||||    
T  13248155 tgggtttgtccaaacccacccaatagtataacggagggttattttacttcactcgaaccggagtatcctatttagtt-tggttttgggtttgaccaaacc 13248057  T
Q  167 caacccaaaccaacccacttacacccctag 196  Q
    ||| ||||||| ||||||  ||||||||||    
T  13248056 caatccaaacccacccacgaacacccctag 13248027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 24617314 - 24617461
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    ||||| |||| | ||||| |||| |||| ||  |||||| |||||||||| |||||||| || || | ||||   ||| ||||||| || || |||||||    
T  24617314 gggtagcccattacccaatccaacccaacccaaaaattagtgggtttgcccaaacccactcaatagtataacaaatggttattttatctcacccaaaccg 24617413  T
Q  127 gagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaa 175  Q
     |||||||||| ||||| || | ||||||||||||||||||||| ||||    
T  24617414 aagtaccctatttggtttggtt-ttgggtttggccaaacccaactcaaa 24617461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 39330644 - 39330537
Alignment:
Q  60 aaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtcttgggtttgg 159  Q
    |||||| |||||||| | ||||||| ||| || | |||| ||||| |||||||||| |   ||| ||||||||||||| |||||  ||| ||||||||||    
T  39330644 aaattagtgggtttgtccaaacccatccaatagtataacaggtggttattttacctcatctaaatcggagtaccctatttggtt-tggttttgggtttgg 39330546  T
Q  160 ccaaaccca 168  Q
    |||||||||    
T  39330545 ccaaaccca 39330537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 29143038 - 29143088
Alignment:
Q  42 caacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaa 92  Q
    |||||||| |||||||| ||||||||||||||| | ||| |||||||||||    
T  29143038 caacccaaaccaaaccgaaaattaatgggtttgtccaaatccacccattaa 29143088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 28735 - 28861
Alignment:
Q  51 ccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatatggttcgggtct 150  Q
    |||||||||||| || |||||||| | |||||||||||||||| ||| ||||| | ||||||||| || |||| || |||| |||||||||||| |||||    
T  28735 ccaaaccggaaactagtgggtttgtccaaacccacccattaatataatgggtgaacattttacctcacccaaatcgaagtatcctatatggttcaggtct 28834  T
Q  151 tgggtttggccaaacccaacccaaacc 177  Q
    |||||||||||||||||||||||||||    
T  28835 tgggtttggccaaacccaacccaaacc 28861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 26531 - 26395
Alignment:
Q  40 cccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggagtaccctatat 139  Q
    |||||||||| |||||||| ||| || ||| |||||  ||| |||||||||||| ||| |||||||  ||||| || ||  ||||||||||| ||| |||    
T  26531 cccaacccaaaccaaaccgaaaactagtggttttgcgcaaatccacccattaatataatgggtggacgttttatcttacctaaaccggagtatcctttat 26432  T
Q  140 ggttcgggtcttgggtttggccaaacccaacccaaac 176  Q
    ||||||||||||||||||||||||||||||| |||||    
T  26431 ggttcgggtcttgggtttggccaaacccaactcaaac 26395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 2729 - 2839
Alignment:
Q  27 gggtaacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccg 126  Q
    |||||||||| | ||||| |||| |||| ||  |||||| |||||||| | ||||||||||| |||| |||||||||| |||||||||| || ||||| |    
T  2729 gggtaacccattacccaatccaacccaacccaaaaattagtgggtttgtccaaacccacccaataatataacgggtggttattttacctcacccaaactg 2828  T
Q  127 gagtaccctat 137  Q
     ||||||||||    
T  2829 aagtaccctat 2839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 4399 - 4506
Alignment:
Q  30 taacccactgcccaacccaagccaaaccggaaattaatgggtttgcctaaacccacccattaatttaacgggtggatattttacctaactcaaaccggag 129  Q
    ||||||| | ||||| |||| |||| ||  |||||| |||||||| | ||||||||||| |||| |||||||||| |||||||||| || ||||| | ||    
T  4399 taacccattacccaatccaacccaacccaaaaattagtgggtttggccaaacccacccaataatataacgggtggttattttacctcacccaaactgaag 4498  T
Q  130 taccctat 137  Q
    ||||||||    
T  4499 taccctat 4506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0954 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0954
Description:

Target: scaffold0954; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 235 - 163
Alignment:
Q  123 accggagtaccctatatggttcgggtcttgggtttggccaaacccaacccaaaccaacccacttacaccccta 195  Q
    |||||| |||||||||||||| | || |||||||||| | ||| ||||||||||  || ||| ||||||||||    
T  235 accggattaccctatatggtttgagttttgggtttggtcgaactcaacccaaactgactcacgtacaccccta 163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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