View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_high_49 (Length: 243)
Name: NF20519_high_49
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_49 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 37664075 - 37664300
Alignment:
| Q |
18 |
gtttgcggaattggttgagatttaagtcaaataacatggattacgatatgaatcattgccacgtgaatcctagagcttgtcttggatgtgtggatttgta |
117 |
Q |
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| T |
37664075 |
gtttgcgaaattggttgagatttaagtcaaagaacatggattacgatatgaatcattgctacgtgaatcctagagcttgtcttggatgtgtggatttgta |
37664174 |
T |
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| Q |
118 |
agggtgatgttgaggataatgcgttcttagaactgggagcattttggctgctaaagcactttttgtgagattttggagttgtctgcagtgtcccaatagt |
217 |
Q |
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| T |
37664175 |
agggtgatgttgaggataatgcgttcttagaactgggagcattttggctgctgaagcactttttgtgagattttggagttgtctgcagtgtccgaatagt |
37664274 |
T |
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| Q |
218 |
tttggcttctttaaaatattttcaat |
243 |
Q |
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| T |
37664275 |
tttggcttctttaaagtattttcaat |
37664300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 37673797 - 37674022
Alignment:
| Q |
18 |
gtttgcggaattggttgagatttaagtcaaataacatggattacgatatgaatcattgccacgtgaatcctagagcttgtcttggatgtgtggatttgta |
117 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37673797 |
gtttgcgaaattggttgagatttaagtcaaagaacatggattacgatatgaatcattgctacgtgaatcctagagcttgtcttggatgtgtggatttgta |
37673896 |
T |
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| Q |
118 |
agggtgatgttgaggataatgcgttcttagaactgggagcattttggctgctaaagcactttttgtgagattttggagttgtctgcagtgtcccaatagt |
217 |
Q |
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| T |
37673897 |
agggtgatgttgaggataatgcgttcttagaactgggagcattttggctgctgaagcactttttgtgagattttggagttgtctgcagtgtccgaatagt |
37673996 |
T |
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| Q |
218 |
tttggcttctttaaaatattttcaat |
243 |
Q |
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| T |
37673997 |
tttggcttctttaaagtattttcaat |
37674022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 37702726 - 37702676
Alignment:
| Q |
189 |
tttggagttgtctgcagtgtcccaatagttttggcttctttaaaatatttt |
239 |
Q |
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| T |
37702726 |
tttggagttgtctgcagtgtccgaataattttggcttctttaaagtatttt |
37702676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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