View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20519_high_5 (Length: 555)
Name: NF20519_high_5
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 393 - 545
Target Start/End: Complemental strand, 22541774 - 22541620
Alignment:
| Q |
393 |
tacaaacacaattctgcctaagttataaacatcacaattcacaataattctacctaggaaaatgaatgttaacaaaaataaaggttatagaaacaagtac |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22541774 |
tacaaacacaattctgcctaagttataaacatcacaattcacaataattctgcctaggaaaatgaatgttaacaaaaataaaggttatagaaacaagtac |
22541675 |
T |
|
| Q |
493 |
ttgattcatttagatatcaattctctcaacaaaa--cacaaccgtataagtataa |
545 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22541674 |
ttgattcatttagataccaattctctcaacaaaaatcacaaccgtataagtataa |
22541620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 34853505 - 34853701
Alignment:
| Q |
17 |
aaaaggtggatacttttgtgagtatgataaaacataaaaatcgaaagtgtaattaagcaaaacnnnnnnnnttatcatatctctaagattatcttgaatt |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
34853505 |
aaaaggtggataattttgtgagtatgataaaacagaaaaaccgaaagtgtaattaagcaaaacaaaaaaaattatcatatctctatgattatcttgaatt |
34853604 |
T |
|
| Q |
117 |
gaagnnnnnnnn-ttgtaaggtttaagttgtcttacgggggaccacaacattttcaaatcatcatattctaaaaatataaacctgcatgcatgcatg |
212 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34853605 |
gaaggaaaaaaaattgcaaggtttaagttgtcttacgggggactacaacattttcaaatcatcacattctaaaaatataaacctgcatgcatgcatg |
34853701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 283 - 384
Target Start/End: Complemental strand, 22541903 - 22541802
Alignment:
| Q |
283 |
ttgttgatcttgttgcgcaattctcctcatctgcgctaatctgcctaacttataaacatcacattattagttacaatacattcacggattcaccatccac |
382 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22541903 |
ttgttgatattgttgcgcaattctcctcatctgcgctaatctgcctaaattatcaacatcacattattagttacaatacattcacggattcaccatccac |
22541804 |
T |
|
| Q |
383 |
aa |
384 |
Q |
| |
|
|| |
|
|
| T |
22541803 |
aa |
22541802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 43585648 - 43585595
Alignment:
| Q |
314 |
tgcgctaatctgcctaacttataaacatcacattattagttacaatacattcac |
367 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43585648 |
tgcgctaatttgcctaagttataaacatcacattattagttacaatacattcac |
43585595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 526
Target Start/End: Complemental strand, 53707852 - 53707777
Alignment:
| Q |
450 |
gaaaatgaatgttaacaaaaataaaggttatagaaacaagtacttgattcatttagatatcaattctctcaacaaaa |
526 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| |||||||||| | ||||||||| ||||||| ||||||||| |
|
|
| T |
53707852 |
gaaaatgaatgttaacaaaaataaaggtcagagaatcaagtacttg-tgaatttagataccaattctatcaacaaaa |
53707777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 450 - 526
Target Start/End: Original strand, 38578010 - 38578085
Alignment:
| Q |
450 |
gaaaatgaatgttaacaaaaataaaggttatagaaacaagtacttgattcatttagatatcaattctctcaacaaaa |
526 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||| |||||||||| | ||||||||| ||||||| ||||||||| |
|
|
| T |
38578010 |
gaaaatgaatgttaagaaaaataaaggttagagaatcaagtacttg-tgaatttagataccaattctatcaacaaaa |
38578085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 437
Target Start/End: Complemental strand, 39531696 - 39531664
Alignment:
| Q |
405 |
tctgcctaagttataaacatcacaattcacaat |
437 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
39531696 |
tctgcctaagttataaacatcacaaatcacaat |
39531664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University