View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20519_high_55 (Length: 238)

Name: NF20519_high_55
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20519_high_55
NF20519_high_55
[»] chr2 (11 HSPs)
chr2 (1-221)||(22416795-22417015)
chr2 (1-221)||(34899517-34899736)
chr2 (1-221)||(30357009-30357228)
chr2 (1-220)||(37575633-37575851)
chr2 (1-125)||(27451364-27451486)
chr2 (86-221)||(17474055-17474193)
chr2 (1-127)||(8423518-8423642)
chr2 (3-158)||(16749639-16749784)
chr2 (86-160)||(5708511-5708585)
chr2 (1-73)||(28606441-28606513)
chr2 (93-153)||(40332975-40333035)
[»] chr7 (14 HSPs)
chr7 (1-221)||(40210182-40210402)
chr7 (1-221)||(24954597-24954813)
chr7 (1-221)||(36107408-36107629)
chr7 (1-221)||(41987064-41987283)
chr7 (1-221)||(33438657-33438888)
chr7 (1-127)||(3407579-3407703)
chr7 (2-127)||(32538334-32538457)
chr7 (1-127)||(44959532-44959656)
chr7 (1-124)||(3936888-3937010)
chr7 (1-127)||(16279507-16279631)
chr7 (1-127)||(37632761-37632885)
chr7 (86-127)||(3407530-3407571)
chr7 (87-127)||(28363241-28363281)
chr7 (1-73)||(49105612-49105684)
[»] chr1 (17 HSPs)
chr1 (1-221)||(19584766-19584987)
chr1 (1-221)||(51250964-51251184)
chr1 (1-221)||(14795608-14795826)
chr1 (1-221)||(14804482-14804700)
chr1 (1-221)||(50049981-50050201)
chr1 (1-221)||(40709726-40709945)
chr1 (1-220)||(8059186-8059406)
chr1 (1-221)||(31200282-31200504)
chr1 (1-220)||(21968898-21969117)
chr1 (1-211)||(29030741-29030950)
chr1 (1-131)||(39330849-39330977)
chr1 (3-127)||(38036163-38036285)
chr1 (1-70)||(14293681-14293750)
chr1 (1-141)||(39783279-39783417)
chr1 (1-63)||(15836844-15836906)
chr1 (86-127)||(14293574-14293615)
chr1 (1-73)||(10789113-10789185)
[»] chr6 (10 HSPs)
chr6 (1-221)||(3100883-3101102)
chr6 (1-221)||(8770275-8770494)
chr6 (1-220)||(30125368-30125585)
chr6 (1-221)||(6940295-6940513)
chr6 (8-127)||(18999528-18999645)
chr6 (1-127)||(17436865-17436989)
chr6 (86-127)||(11172526-11172567)
chr6 (136-221)||(31834099-31834184)
chr6 (1-75)||(31834271-31834343)
chr6 (86-127)||(17436816-17436857)
[»] chr5 (18 HSPs)
chr5 (1-221)||(9888822-9889040)
chr5 (1-221)||(16049025-16049244)
chr5 (1-221)||(23927979-23928198)
chr5 (1-221)||(29289519-29289740)
chr5 (1-127)||(35667558-35667682)
chr5 (1-148)||(40484586-40484731)
chr5 (1-127)||(10540377-10540501)
chr5 (1-127)||(26362987-26363111)
chr5 (86-147)||(38437469-38437530)
chr5 (1-70)||(41359138-41359207)
chr5 (86-127)||(41359229-41359270)
chr5 (10-72)||(425964-426026)
chr5 (1-67)||(14634092-14634158)
chr5 (86-148)||(14634431-14634493)
chr5 (86-119)||(10540509-10540542)
chr5 (86-127)||(26363119-26363160)
chr5 (86-127)||(35667509-35667550)
chr5 (150-221)||(26363209-26363281)
[»] chr4 (10 HSPs)
chr4 (1-221)||(23723183-23723401)
chr4 (1-221)||(32951330-32951549)
chr4 (1-221)||(42547350-42547569)
chr4 (1-221)||(27925330-27925549)
chr4 (1-127)||(890592-890716)
chr4 (1-127)||(43342717-43342841)
chr4 (1-127)||(28043787-28043911)
chr4 (86-127)||(43342668-43342709)
chr4 (1-73)||(9958646-9958718)
chr4 (1-73)||(33615704-33615776)
[»] chr3 (10 HSPs)
chr3 (1-220)||(4774176-4774394)
chr3 (1-221)||(39085076-39085296)
chr3 (1-221)||(48432885-48433108)
chr3 (1-221)||(12025914-12026134)
chr3 (1-127)||(53592564-53592687)
chr3 (1-127)||(45222673-45222797)
chr3 (86-127)||(52498604-52498645)
chr3 (86-127)||(52498555-52498596)
chr3 (86-131)||(53592695-53592740)
chr3 (93-161)||(21810718-21810786)
[»] chr8 (13 HSPs)
chr8 (1-221)||(2740-2962)
chr8 (1-221)||(31627722-31627941)
chr8 (1-221)||(33365171-33365390)
chr8 (1-221)||(232156-232378)
chr8 (1-221)||(708567-708789)
chr8 (1-221)||(745779-746001)
chr8 (1-221)||(869674-869896)
chr8 (1-127)||(37781148-37781272)
chr8 (1-127)||(39918918-39919042)
chr8 (1-75)||(37675032-37675106)
chr8 (1-76)||(13248380-13248455)
chr8 (86-127)||(37781280-37781321)
chr8 (86-127)||(39919050-39919091)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-221)||(397187-397406)
[»] scaffold0123 (2 HSPs)
scaffold0123 (1-127)||(26731-26853)
scaffold0123 (86-127)||(26861-26902)
[»] scaffold0017 (2 HSPs)
scaffold0017 (1-127)||(28378-28503)
scaffold0017 (86-127)||(28329-28370)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22416795 - 22417015
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  22416795 taaagttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttttattttcaatatagag 22416894  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  22416895 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatta 22416994  T
Q  201 ttgggtaagttggtttattgg 221  Q
    ||| |||||||||||||||||    
T  22416995 ttgagtaagttggtttattgg 22417015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34899517 - 34899736
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  34899517 taaagttgaatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 34899615  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  34899616 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttgaaaatta 34899715  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  34899716 ttgggtaagttggtttattgg 34899736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30357228 - 30357009
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  30357228 taaagttgtatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 30357130  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  30357129 gatgtgttgtgtcaatcttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttgaaaatta 30357030  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  30357029 ttgggtaagttggtttattgg 30357009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 37575851 - 37575633
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||         |||||||||||||||    
T  37575851 taaagttggatgacgcaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactttaatatttttttt-attttcaatatagag 37575753  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  37575752 gatgtgttgtgtcaattttaaaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatta 37575653  T
Q  201 ttgggtaagttggtttattg 220  Q
    ||||||||||||||| ||||    
T  37575652 ttgggtaagttggttaattg 37575633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 27451486 - 27451364
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||| |||||||| ||||||||||||| ||| |         |||||||||||||||    
T  27451486 taaagttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgcaacataataatttgtaactataaca--tgttttgattttcaatatagag 27451389  T
Q  101 gatgtgttgtgtcaattttagaaat 125  Q
     ||||||||||||||||||||||||    
T  27451388 aatgtgttgtgtcaattttagaaat 27451364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 221
Target Start/End: Original strand, 17474055 - 17474193
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaatt 185  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||  |||||||| ||| || |||||||||||  |||| |||||||||||||| | |    
T  17474055 attttcaatacagaggatgtcttgtgtcaattttagaaattagacttgatttatgaccaagacctttgttattctccttcctccctatgaaaatgataat 17474154  T
Q  186 ---aaaatttggaaattattgggtaagttggtttattgg 221  Q
       |||||  | | |||||||||||||| ||||||||||    
T  17474155 aaaaaaatacgaacattattgggtaagtgggtttattgg 17474193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 8423642 - 8423518
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||| ||||| | ||||| ||||||| | ||||| |||||| ||| | |||||||||||||||||||||||| |         |||||||||||||||    
T  8423642 taaagtgggatggcataaaattgctttaacttcaaaataactaaaaagttcaacatcataatttgtaactctaacatgttttt--attttcaatatagag 8423545  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||||||||||    
T  8423544 gatgtgttgtgtcaattttagaaatta 8423518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 16749639 - 16749784
Alignment:
Q  3 aagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagagga 102  Q
    |||||||||||||||||| || |||||||| ||| ||||||        ||||||||||||||||||||||| |         ||||||||||||||| |    
T  16749639 aagttggatgacgtaaaattgttttagcataaaaataacta--------aacatcataatttgtaactctaacatgttttg--attttcaatatagagaa 16749728  T
Q  103 tgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttatt 158  Q
    ||||||||||||||||||||||||| ||| ||||||||| | |||| |||||||||    
T  16749729 tgtgttgtgtcaattttagaaattagacttaatttatgacccaaacctttgttatt 16749784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 5708511 - 5708585
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattct 160  Q
    |||||| |||| || ||||| |||||| |||||||||||||| ||| ||||||||| ||||| ||||| ||||||    
T  5708511 attttcgatatggatgatgtcttgtgttaattttagaaattagacttaatttatgaccaaaatatttggtattct 5708585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 28606441 - 28606513
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactcta 73  Q
    |||||||| ||||| ||||| ||| |||||||| || |||| | ||| ||||||||| |||||||||||||||    
T  28606441 taaagttgtatgacataaaattgcattagcatccaaataaccaaaaagtgcaacatcctaatttgtaactcta 28606513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 40332975 - 40333035
Alignment:
Q  93 atatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttg 153  Q
    |||||||| || | |||||||||||||  ||||||||||  ||||||||||||||| ||||    
T  40332975 atatagagaatatcttgtgtcaattttgaaaattaaacttgatttatgatcaaaacctttg 40333035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 9e-94; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40210402 - 40210182
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  40210402 taaagttggatgatgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttttattttcaatatagag 40210303  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  40210302 gatatgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatta 40210203  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  40210202 ttgggtaagttggtttattgg 40210182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24954597 - 24954813
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  24954597 taaagttgaatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 24954695  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||| ||||||    
T  24954696 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattc---ttcctccctatgaaaatgaaattaaaatttgaaaatta 24954792  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  24954793 ttgggtaagttggtttattgg 24954813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 36107408 - 36107629
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnna-ttttcaatataga 99  Q
    |||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||         | |||||||||||||    
T  36107408 taaagttgaatgacgtaaaattgctttagcatcaatgtaactataaattgcaacatcataatttgtaactctaatatttttttttaattttcaatataga 36107507  T
Q  100 ggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatt 199  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  36107508 ggatgtgttatgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttgaaaatt 36107607  T
Q  200 attgggtaagttggtttattgg 221  Q
    ||||||||||||||||||||||    
T  36107608 attgggtaagttggtttattgg 36107629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41987064 - 41987283
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||           ||| ||||||||||    
T  41987064 taaagttgaatgacgtaaaattgctttagcatcaaaataactataaattgcaacatcataatttgtaactctaatttttttttttcttt-caatatagag 41987162  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||    
T  41987163 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcttccctatgaaaatgaaattaaaatttgaaaatta 41987262  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  41987263 ttgggtaagttggtttattgg 41987283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33438888 - 33438657
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||         |||||||||||||||    
T  33438888 taaagttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcatcatttataactctaatatttttttt-attttcaatatagag 33438790  T
Q  101 gatgt------------gttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaa 188  Q
    |||||            | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  33438789 gatgttatagaggatgtgatgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattctttttcctccctatgaaaatgaaattaaa 33438690  T
Q  189 atttggaaattattgggtaagttggtttattgg 221  Q
    |||| ||||||||||||||||||||||||||||    
T  33438689 atttagaaattattgggtaagttggtttattgg 33438657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 3407703 - 3407579
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| ||||||| ||| |||  ||||| ||| |||||||||||||||||||||| ||| |         |||||||||||||||    
T  3407703 taaagttgaatgacgtaaaattgctttaacataaaaaaaactaaaaagtgcaacatcataatttgtaactataacacgttttg--attttcaatatagag 3407606  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||||||||||    
T  3407605 gatgtgttgtgtcaattttagaaatta 3407579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 32538334 - 32538457
Alignment:
Q  2 aaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagagg 101  Q
    |||||||||||| |||||| ||| ||| ||||||| ||| || ||| |||| |||||||||||||||||||||||         ||||||||||||||||    
T  32538334 aaagttggatgatgtaaaattgcgttaacatcaaaataattaaaaagtgcagcatcataatttgtaactctaata--tgttttgattttcaatatagagg 32538431  T
Q  102 atgtgttgtgtcaattttagaaatta 127  Q
    ||||||| ||||||||||||||||||    
T  32538432 atgtgttatgtcaattttagaaatta 32538457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 44959532 - 44959656
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||| ||||||||||||||| | ||||| ||||||| |||||| ||| ||||||| || ||||||||||| ||| |         |||||||||||||||    
T  44959532 taaaattggatgacgtaaaatttctttaacatcaaaataactaaaaagtgcaacaacaaaatttgtaactataacatgttttg--attttcaatatagag 44959629  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||||||||||    
T  44959630 gatgtgttgtgtcaattttagaaatta 44959656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 3936888 - 3937010
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaact-ataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatataga 99  Q
    |||||||||||||||||||| ||||||| |||| || ||||| | ||| |||||||||||||||||||||| ||| |         ||||||||||||||    
T  3936888 taaagttggatgacgtaaaattgctttaacatccaaataactaaaaaagtgcaacatcataatttgtaactataaca--tgttttgattttcaatataga 3936985  T
Q  100 ggatgtgttgtgtcaattttagaaa 124  Q
    |||||| ||||||||| ||||||||    
T  3936986 ggatgtattgtgtcaactttagaaa 3937010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 16279507 - 16279631
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||||| ||| |||| ||||||| ||||||| |||||| ||| | |||||||||||||| ||||| ||| |         ||||||||||||||     
T  16279507 taaagttggattacggaaaattgctttaacatcaaaataactaaaaagtacaacatcataatttataactataaca--tgttttgattttcaatatagat 16279604  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||| ||||||||||||||||    
T  16279605 gatgtgttgtatcaattttagaaatta 16279631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 37632885 - 37632761
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||||||| |||||| ||| ||| | ||||| ||| || ||| || ||||||||||||||||||||||| |         |||||||||||||||    
T  37632885 taaagttggatgatgtaaaattgcgttaacttcaaaataattaaaaagtgaaacatcataatttgtaactctaacatgttttg--attttcaatatagag 37632788  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||| ||||||||||| ||||||    
T  37632787 gatgtgttatgtcaattttaaaaatta 37632761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 3407571 - 3407530
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  3407571 attttcaatatagaggatttgttgtgtcaatttttgaaatta 3407530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 28363241 - 28363281
Alignment:
Q  87 ttttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    |||| |||||||||||| ||||||||||||||| |||||||    
T  28363241 tttttaatatagaggatttgttgtgtcaatttttgaaatta 28363281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 49105684 - 49105612
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactcta 73  Q
    |||||||| ||||| ||||| ||| |||| |||||| |||| | ||| ||||||||  |||||||||||||||    
T  49105684 taaagttgcatgacataaaattgcattagtatcaaaataacaaaaaagtgcaacatattaatttgtaactcta 49105612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 171; Significance: 6e-92; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 19584766 - 19584987
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnn-attttcaatataga 99  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||    
T  19584766 taaagttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaattttttttatttattttcaatataga 19584865  T
Q  100 ggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  19584866 ggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatt 19584965  T
Q  200 attgggtaagttggtttattgg 221  Q
    ||||||||||||||||||||||    
T  19584966 attgggtaagttggtttattgg 19584987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51250964 - 51251184
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||    
T  51250964 taaaattggatgacgtaaaattactttagcatcaaagtaactataaattgcaacatcataatttgtaactccaatatttttttttattttcaatatagag 51251063  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  51251064 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatta 51251163  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  51251164 ttgggtaagttggtttattgg 51251184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14795826 - 14795608
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||         |||||||||||||||    
T  14795826 taaagttggatgacgtaaaattgctttaacatcaaagtaactataa-ttgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 14795729  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  14795728 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatta 14795629  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  14795628 ttgggtaagttggtttattgg 14795608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14804700 - 14804482
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||         |||||||||||||||    
T  14804700 taaagttggatgacgtaaaattgctttaacatcaaagtaactataa-ttgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 14804603  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  14804602 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatta 14804503  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  14804502 ttgggtaagttggtttattgg 14804482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 50050201 - 50049981
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||           ||||||||||||||    
T  50050201 taaagttggttgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttataactctaattttttatttttttttcaatatagag 50050102  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  50050101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctataaaaatgaaattaaaatttggaaatta 50050002  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  50050001 ttgggtaagttggtttattgg 50049981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 40709945 - 40709726
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  40709945 taaagttgaatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 40709847  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||  |||||||||||||||||||||||||| ||||||    
T  40709846 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacacttgttattcttcttcttccctatgaaaatgaaattaaaatttgaaaatta 40709747  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  40709746 ttgggtaagttggtttattgg 40709726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8059406 - 8059186
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnn-attttcaatataga 99  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  8059406 taaagttgaatgacgtaaaattgctttagcattaaagtaactataaattgcaacatcataatttgtaactctaatattttctttttattttcaatataga 8059307  T
Q  100 ggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatt 199  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  8059306 ggatgtgttgtgtcaattttagaaattaaattaaatttatgatcaaaatatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatt 8059207  T
Q  200 attgggtaagttggtttattg 220  Q
    ||| |||||||||||||||||    
T  8059206 attaggtaagttggtttattg 8059186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31200282 - 31200504
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnn--attttcaatatag 98  Q
    |||||||||||||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||    
T  31200282 taaagttggatgacgtaagattgttttaacatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttttttattttcaatatag 31200381  T
Q  99 aggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaat 198  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||    
T  31200382 aggatatgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttagaaat 31200481  T
Q  199 tattgggtaagttggtttattgg 221  Q
    |||||||||| ||||||||||||    
T  31200482 tattgggtaaattggtttattgg 31200504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 21969117 - 21968898
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  21969117 taaagttgaatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 21969019  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatt- 199  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||| || || |||  |||||| ||||||||||||||||||| |||||     
T  21969018 gatgtgttgtgtcaattttagaaattaaactaatcttatgatcaaaacatttgttgttattcttcttccctataaaaatgaaattaaaatttgaaaatta 21968919  T
Q  200 attgggtaagttggtttattg 220  Q
    |||||||||||||||||||||    
T  21968918 attgggtaagttggtttattg 21968898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 29030741 - 29030950
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||| ||||||||| ||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||||||| |         ||||| ||||||||     
T  29030741 taaatttggatgacataaaattgctttagcattaaaataactataaaatgcaacatcataatttgtaactctaacatgttttg--atttttaatatagaa 29030838  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatg-aaattaaaatttggaaatt 199  Q
    |||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||  |||| ||||||||||| | |||| ||||| |||| |||    
T  29030839 gatgtgttgtgtgaattttagaaattaaacttcatttatgatcaaaacctttgttattctccttcctccctatgaaaacgaaaataaaaatatggacatt 29030938  T
Q  200 attgggtaagtt 211  Q
    ||||||||||||    
T  29030939 attgggtaagtt 29030950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 39330977 - 39330849
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||||||||| |||| | | ||| ||||||| |||||| ||| ||||||| ||||||||||| || ||| |         |||||||||||||||    
T  39330977 taaagttggatgacgaaaaatttcattaacatcaaaataactaaaaagtgcaacaacataatttgtagctgtaacatgttttg--attttcaatatagag 39330880  T
Q  101 gatgtgttgtgtcaattttagaaattaaact 131  Q
    |||||||||||||||||||||||||||||||    
T  39330879 gatgtgttgtgtcaattttagaaattaaact 39330849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 38036285 - 38036163
Alignment:
Q  3 aagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagagga 102  Q
    |||||||||||||||||| ||||||| ||||||| |||||| ||| ||||||||| |||||| ||||| ||| |         |||||||||||||| ||    
T  38036285 aagttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgcaacatcgtaatttttaactataaca--tgttttaattttcaatatagatga 38036188  T
Q  103 tgtgttgtgtcaattttagaaatta 127  Q
    ||| |||||||||||||| ||||||    
T  38036187 tgtattgtgtcaattttaaaaatta 38036163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14293750 - 14293681
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaact 70  Q
    |||||||||||||||||||| | ||||| ||||||| |||||| ||| ||||| ||||||||||||||||    
T  14293750 taaagttggatgacgtaaaatttctttaacatcaaaataactaaaaagtgcaagatcataatttgtaact 14293681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 39783279 - 39783417
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||| ||||| | | ||||||||||| ||||   |||||||||||||||||||||||||||||| |         ||||||||||||||     
T  39783279 taaagttgaatgacataaaatttcattagcatcaaaataaccgaaaattgcaacatcataatttgtaactctaaca--tgttttaattttcaatatagat 39783376  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatga 141  Q
    |||   |||||||||||||  |||||||| |||||||||||    
T  39783377 gataccttgtgtcaattttgaaaattaaattaaatttatga 39783417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 15836844 - 15836906
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatt 63  Q
    |||||||||||||||||||| ||||||| ||| ||| || ||| ||| |||||||||||||||    
T  15836844 taaagttggatgacgtaaaattgctttaacataaaaatatctaaaaagtgcaacatcataatt 15836906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 14293615 - 14293574
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  14293615 attttcaatatagaggatttgttgtgtcaatttttgaaatta 14293574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 10789185 - 10789113
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactcta 73  Q
    |||| ||| ||||| ||||| ||| ||||||||||| |||  | ||| ||||||||| |||||||||||||||    
T  10789185 taaaattgtatgacataaaattgcattagcatcaaaataatcaaaaagtgcaacatcctaatttgtaactcta 10789113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 9e-91; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3100883 - 3101102
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  3100883 taaagttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 3100981  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||    
T  3100982 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattctttttcctctctatgaaaatgaaattaaaatttggaaatta 3101081  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||| ||||||||||||    
T  3101082 ttgggtaaattggtttattgg 3101102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8770275 - 8770494
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||| |||||         |||||||||||||||    
T  8770275 taaagttggatgacgtaaaattattttagcatcaaagtaactataaattgcaacatcataatttgtaactataatatttttttt-attttcaatatagag 8770373  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  8770374 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttgaaaatta 8770473  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  8770474 ttgggtaagttggtttattgg 8770494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 30125585 - 30125368
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||         |||||||||||||||    
T  30125585 taaagttggatgacgtaaaattgctttaacatcaaagtaactataa-ttgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 30125488  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  30125487 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattagaatttggaaatta 30125388  T
Q  201 ttgggtaagttggtttattg 220  Q
    ||||||||||||||||||||    
T  30125387 ttgggtaagttggtttattg 30125368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6940295 - 6940513
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||| ||||||||||||  | |||||||||||| ||||||||||||||||||||||||||||||||||| | |         |||||||||| ||||    
T  6940295 taaagttagatgacgtaaaatagatttagcatcaaaataactataaattgcaacatcataatttgtaactctcacatgttttg--attttcaataaagag 6940392  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatg-aaattaaaatttggaaatt 199  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||  |||||| |||| ||||  |||||||||||| |||| ||||| | || |||    
T  6940393 gatgtgttgtgtcaattttagaaattagactagatttatgatcaaaac-cttgttactcttcttccttcctatgaaaatgaaaataaaaatatagacatt 6940491  T
Q  200 attgggtaagttggtttattgg 221  Q
    ||||||||||| ||||||||||    
T  6940492 attgggtaagtgggtttattgg 6940513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 18999645 - 18999528
Alignment:
Q  8 ggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagaggatgtgt 107  Q
    ||||||||||||| ||||||| | ||||| |||||| ||| |||||||||||||||||||||||||| |         |||||||||| |||||||||||    
T  18999645 ggatgacgtaaaattgctttaacttcaaaataactaaaaagtgcaacatcataatttgtaactctaaca--tgtttttattttcaatacagaggatgtgt 18999548  T
Q  108 tgtgtcaattttagaaatta 127  Q
    ||| ||||||||||||||||    
T  18999547 tgtatcaattttagaaatta 18999528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 17436989 - 17436865
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||| |||||| ||||| ||||||| ||||||| |||||| ||| |||||| || |||||||||||| ||| |         |||||||||||||||    
T  17436989 taaagttagatgacataaaattgctttaacatcaaaataactaaaaagtgcaacgtcgtaatttgtaactataacatgttttg--attttcaatatagag 17436892  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||||||||||    
T  17436891 gatgtgttgtgtcaattttagaaatta 17436865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 11172526 - 11172567
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  11172526 attttcaatatagaggatgtgttgtatcaattttagaaatta 11172567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 31834184 - 31834099
Alignment:
Q  136 ttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaattattgggtaagttggtttattgg 221  Q
    |||| |||||||| |||||||||||  |||| |||||||||||||||| ||||| |  || |||||||| ||||| ||||||||||    
T  31834184 ttataatcaaaacctttgttattctccttcctccctatgaaaatgaaaataaaaatatgacattattggataagtgggtttattgg 31834099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 31834343 - 31834271
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaat 75  Q
    ||||||| |||||| ||||| || |||| ||||||| ||||||  || |||||||||||||||||||||| ||||    
T  31834343 taaagttagatgacctaaaattgttttaacatcaaaataacta--aagtgcaacatcataatttgtaactataat 31834271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 17436857 - 17436816
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    ||||||||||||||| || ||||||||||||||| |||||||    
T  17436857 attttcaatatagagaatttgttgtgtcaatttttgaaatta 17436816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 9889040 - 9888822
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  9889040 taaagttggatgacgtaaaattgctttagcataaaagtaactataaattgcaacatcataatttgtaactctaatattttttt--attttcaatatagag 9888943  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  9888942 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatta 9888843  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||| ||||||||||||||||    
T  9888842 ttggataagttggtttattgg 9888822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 16049025 - 16049244
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  16049025 taaagttgaatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 16049123  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  16049124 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttcatccctatgaaaatgaaattaaaatttgaaaatta 16049223  T
Q  201 ttgggtaagttggtttattgg 221  Q
    ||| |||||||||||||||||    
T  16049224 ttgtgtaagttggtttattgg 16049244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23928198 - 23927979
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  23928198 taaagttggatgacgtaaaattgatttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatctttttt-attttcaatatagag 23928100  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  23928099 gatgtggtgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctgtgaaaatgaaattaaaatttggaaatta 23928000  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  23927999 ttgggtaagttggtttattgg 23927979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 29289740 - 29289519
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnn-attttcaatataga 99  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||    
T  29289740 taaagttgaatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatattttttatttattttcaatataga 29289641  T
Q  100 ggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatt 199  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||    
T  29289640 ggatgtgttgtgttaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttgaaaatt 29289541  T
Q  200 attgggtaagttggtttattgg 221  Q
    ||||||||||||||||||||||    
T  29289540 attgggtaagttggtttattgg 29289519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 35667682 - 35667558
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||| ||||||||||||| ||||||| | ||||| |||||| ||| | |||||||||||||||||||||||| |         |||||||||||||||    
T  35667682 taaagtgggatgacgtaaaattgctttaacttcaaaataactaaaaagttcaacatcataatttgtaactctaacatgttttt--attttcaatatagag 35667585  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||||||||||    
T  35667584 gatgtgttgtgtcaattttagaaatta 35667558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 40484586 - 40484731
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||||||| |||||| ||| ||| ||||||| ||| || ||| |||||||||||||||||||||||||| |         |||||||||||||||    
T  40484586 taaagttggatgatgtaaaattgcgttaacatcaaaataattaaaaagtgcaacatcataatttgtaactctaaga--tgttttgattttcaatatagag 40484683  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaac 148  Q
    |||||||| |||||||||||||||||| |||  |||||| | ||||||    
T  40484684 gatgtgttatgtcaattttagaaattagacttgatttataaccaaaac 40484731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 10540377 - 10540501
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||| ||||| ||||||||||| |||| ||  |         |||||||||||||||    
T  10540377 taaagttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgcaagatcataatttgcaactatatca--tgttttgattttcaatatagag 10540474  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||| ||||||    
T  10540475 gatgtgttgtgtcaattttaaaaatta 10540501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 26362987 - 26363111
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||| ||||| ||||||||||| |||| ||  |         |||||||||||||||    
T  26362987 taaagttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgcaagatcataatttgcaactatatca--tgttttgattttcaatatagag 26363084  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||| ||||||||| ||||||||    
T  26363085 gatgtgttttgtcaatttaagaaatta 26363111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 38437530 - 38437469
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaa 147  Q
    |||||||||||| | ||||| ||||||||||||| ||||| | ||| |||||||||||||||    
T  38437530 attttcaatatataagatgttttgtgtcaattttggaaatgagacttaatttatgatcaaaa 38437469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 41359138 - 41359207
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaact 70  Q
    |||||||| ||||| ||||| | ||||| ||||||| |||||| ||| ||||| ||||||||||||||||    
T  41359138 taaagttgaatgacctaaaattactttaacatcaaaataactaaaaagtgcaatatcataatttgtaact 41359207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 41359229 - 41359270
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  41359229 attttcaatatagaggatgtgttttgtctattttagaaatta 41359270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 425964 - 426026
Alignment:
Q  10 atgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactct 72  Q
    ||||| ||||| ||| ||||||||||| |||| | ||| ||||||||| ||||||||||||||    
T  425964 atgacataaaattgcattagcatcaaaataaccaaaaagtgcaacatcctaatttgtaactct 426026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 14634092 - 14634158
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgta 67  Q
    ||||||||||||| |||||| ||| ||| ||||||| ||| || ||| ||||||||||||| |||||    
T  14634092 taaagttggatgatgtaaaattgcgttaacatcaaaataattaaaaagtgcaacatcataacttgta 14634158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 14634431 - 14634493
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaac 148  Q
    |||||||||||| | |||||||| |||||||||||||||||| |||  |||||| | ||||||    
T  14634431 attttcaatataaatgatgtgttatgtcaattttagaaattagacttgatttataaccaaaac 14634493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 10540509 - 10540542
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaatttt 119  Q
    |||||||||||||||||| |||||||||||||||    
T  10540509 attttcaatatagaggatttgttgtgtcaatttt 10540542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 26363119 - 26363160
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||| |||||||| |||||| |||||||    
T  26363119 attttcaatatagaggatttgttgtgttaatttttgaaatta 26363160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 35667550 - 35667509
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||| | ||||||||| |||||||||||    
T  35667550 attttcaatatagaggatttattgtgtcaaatttagaaatta 35667509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 26363209 - 26363281
Alignment:
Q  150 tttgttattcttgttccaccctatgaaaatg-aaattaaaatttggaaattattgggtaagttggtttattgg 221  Q
    |||||||||||  |||| ||||||||||||| |||| ||||| || | ||||||||||||||  |||||||||    
T  26363209 tttgttattctccttcctccctatgaaaatgaaaataaaaatatgaacattattgggtaagtgagtttattgg 26363281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 9e-91; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23723183 - 23723401
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  23723183 taaagttggatgatgtaaaattgctttagcataaaagtaactataaattgcaacatcataatttgtaactctaatattttttt--attttcaatatagag 23723280  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  23723281 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatta 23723380  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  23723381 ttgggtaagttggtttattgg 23723401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 32951549 - 32951330
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  32951549 taaagttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 32951451  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||  ||||||    
T  32951450 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttaaaaatta 32951351  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||| ||||||||||||    
T  32951350 ttgggtaaattggtttattgg 32951330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42547350 - 42547569
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||         |||||||||||||||    
T  42547350 taaagttgaatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttataactctaatatttttttt-attttcaatatagag 42547448  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||    
T  42547449 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttgaaaatta 42547548  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  42547549 ttgggtaagttggtttattgg 42547569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 27925549 - 27925330
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||         ||||| |||||||||    
T  27925549 taaagttgaataacgtaaaattgctttagcatcaaagtaactataaattgaaacatcataatttgtaactctaatatttttttt-atttttaatatagag 27925451  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||    
T  27925450 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcttccctatgaaaatgaaattaaaatttgaaaatta 27925351  T
Q  201 ttgggtaagttggtttattgg 221  Q
    ||| ||||||| |||||||||    
T  27925350 ttgagtaagtttgtttattgg 27925330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 890716 - 890592
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||| ||||||||||||| ||||||| | ||||| |||||| ||| |||||||||||||||||||||||||| |         |||||||||||||||    
T  890716 taaagtaggatgacgtaaaattgctttaacttcaaaataactaaaaagtgcaacatcataatttgtaactctaaca--tgtttttattttcaatatagag 890619  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||| ||||||||||||||||||||    
T  890618 gatgtgctgtgtcaattttagaaatta 890592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 43342841 - 43342717
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| ||||||| ||||||| |||||| ||| || || ||||||||||| |||| ||  |         |||||||||||||||    
T  43342841 taaagttggatgacgtaaaattgctttaacatcaaaataactaaaaagtgtaagatcataatttgcaactatatca--tgttttgattttcaatatagag 43342744  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    ||||||||||||  |||||||||||||    
T  43342743 gatgtgttgtgtagattttagaaatta 43342717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 28043787 - 28043911
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||||| |||||||| ||||||| ||||||| ||| || ||| ||||| ||||||||||| || | ||  |         |||||||||||||||    
T  28043787 taaagttggataacgtaaaattgctttaacatcaaaataattaaaaagtgcaagatcataatttgcaattatatcatgttttg--attttcaatatagag 28043884  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    ||| |||||||||||||||| ||||||    
T  28043885 gatatgttgtgtcaattttaaaaatta 28043911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 43342709 - 43342668
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    ||||||||||||||| || ||||||||||||||| |||||||    
T  43342709 attttcaatatagagaatttgttgtgtcaatttttgaaatta 43342668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 9958646 - 9958718
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactcta 73  Q
    |||||||| ||||| ||||| ||| |||| |||||| |||| | ||| ||||||||  |||||||||||||||    
T  9958646 taaagttgtatgacataaaattgcattagtatcaaaataaccaaaaagtgcaacatattaatttgtaactcta 9958718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 33615704 - 33615776
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactcta 73  Q
    |||||||| ||||| ||||| ||| |||| |||||| |||| | ||| ||||||||  |||||||||||||||    
T  33615704 taaagttgcatgacataaaattgcattagtatcaaaataaccaaaaagtgcaacatattaatttgtaactcta 33615776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4774176 - 4774394
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  4774176 taaagttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 4774274  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  4774275 gatgtgttttgtcaattttaggaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaatta 4774374  T
Q  201 ttgggtaagttggtttattg 220  Q
    ||||||||||||||||||||    
T  4774375 ttgggtaagttggtttattg 4774394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 39085076 - 39085296
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||         |||||||||||||||    
T  39085076 taaagttggatgacgtaaaattgctttagcattaaagtaactataaattgcaacatcataatttgtaactccaatatttttttttattttcaatatagag 39085175  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||     
T  39085176 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttagaaattc 39085275  T
Q  201 ttgggtaagttggtttattgg 221  Q
    ||| |||||||||||||||||    
T  39085276 ttgagtaagttggtttattgg 39085296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48432885 - 48433108
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnn---attttcaatata 97  Q
    |||||||| ||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||            ||||||||||||    
T  48432885 taaagttgaatgacgtaaaattgcattagcatcaaagtaactataaactgcaacatcataatttgtaactctaatatttttttattttattttcaatata 48432984  T
Q  98 gaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||  |||    
T  48432985 gaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttaaaaa 48433084  T
Q  198 ttattgggtaagttggtttattgg 221  Q
    ||||||||||||||||||||||||    
T  48433085 ttattgggtaagttggtttattgg 48433108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 12025914 - 12026134
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  12025914 taaagttggatgacgtaaaattgttttagcattaaagtaactataaattgcaacatcataatttgtaactctaatattttttta-attttcaatatagag 12026012  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatg-aaattaaaatttggaaatt 199  Q
    | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||| |||| ||||||||||||||    
T  12026013 gctgtgttatgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaaatgaaaatttggaaatt 12026112  T
Q  200 attgggtaagttggtttattgg 221  Q
    ||||||||||||||||||||||    
T  12026113 attgggtaagttggtttattgg 12026134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 53592564 - 53592687
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||| ||||||||||||||| ||||||| ||||||| |||||| ||| ||||| ||||||||||| |||| ||            |||||||||||||||    
T  53592564 taaaattggatgacgtaaaattgctttaacatcaaaataacta-aaagtgcaagatcataatttgcaactatat--cctgttttgattttcaatatagag 53592660  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||||||||||    
T  53592661 gatgtgttgtgtcaattttagaaatta 53592687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 45222673 - 45222797
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    ||||||||||||| |||||| ||| ||| ||||||| ||| || ||| ||||||||||||||| ||||||| || |         |||||||||||||||    
T  45222673 taaagttggatgatgtaaaattgcattaacatcaaaataattaaaaagtgcaacatcataattcgtaactccaaca--tgttttgattttcaatatagag 45222770  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
     ||||||| ||||||||||||||||||    
T  45222771 aatgtgttatgtcaattttagaaatta 45222797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 52498645 - 52498604
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  52498645 attttcaatatagaggatgtgttgtgtcaattttagaaatta 52498604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 52498596 - 52498555
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  52498596 attttcaatatagaggatttgttgtgtcaatttttgaaatta 52498555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 53592695 - 53592740
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaattaaact 131  Q
    |||||||||||| ||||| ||||||||||||||| |||||||||||    
T  53592695 attttcaatataaaggatttgttgtgtcaatttttgaaattaaact 53592740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 21810786 - 21810718
Alignment:
Q  93 atatagaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattctt 161  Q
    ||||||||| ||| |||||| |||||| |||| || |||  |||||||| ||||||||||| |||||||    
T  21810786 atatagaggttgtcttgtgttaattttcgaaagtagacttgatttatgaccaaaacatttggtattctt 21810718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2962 - 2740
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnn--attttcaatatag 98  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||           |||||||||||||    
T  2962 taaagttggatgacgtaaaattactttagcatcaaagtaactataaattgcaacatcataatttgtaactctattatttttttttttattttcaatatag 2863  T
Q  99 aggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  2862 aggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcctccctatgaaaatgaaattaaaatttggaaat 2763  T
Q  199 tattgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||||    
T  2762 tattgggtaagttggtttattgg 2740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31627941 - 31627722
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  31627941 taaagttgaatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 31627843  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||  |||||||||||||||||||||||||| ||||||    
T  31627842 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacattttttattcttcttcttccctatgaaaatgaaattaaaatttgaaaatta 31627743  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  31627742 ttgggtaagttggtttattgg 31627722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33365390 - 33365171
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||| ||    
T  33365390 taaagttggatgacgtaaaattgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatataaag 33365292  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||| ||||||    
T  33365291 gatgtgttgtgtcaattttaaaaattaaactaaatttatgatcaaaacatttgttattcttcttcctctctatgaaaatgaaattaaaatttgaaaatta 33365192  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  33365191 ttgggtaagttggtttattgg 33365171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 232378 - 232156
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaa----ctataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatat 96  Q
    |||||||||||||||||||| |||||||||||||||||||    |||||||||||| |||||||||||||||||||||||         |||||||||||    
T  232378 taaagttggatgacgtaaaattgctttagcatcaaagtaagtaactataaattgcagcatcataatttgtaactctaatattttttt--attttcaatat 232281  T
Q  97 agaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  232280 agaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaattaaaatttggaa 232181  T
Q  197 attattgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||||||    
T  232180 attattgggtaagttggtttattgg 232156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 708789 - 708567
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaa----ctataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatat 96  Q
    |||||||||||||||||||| |||||||||||||||||||    |||||||||||| |||||||||||||||||||||||         |||||||||||    
T  708789 taaagttggatgacgtaaaattgctttagcatcaaagtaagtaactataaattgcagcatcataatttgtaactctaatattttttt--attttcaatat 708692  T
Q  97 agaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  708691 agaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaattaaaatttggaa 708592  T
Q  197 attattgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||||||    
T  708591 attattgggtaagttggtttattgg 708567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 746001 - 745779
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaa----ctataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatat 96  Q
    |||||||||||||||||||| |||||||||||||||||||    |||||||||||| |||||||||||||||||||||||         |||||||||||    
T  746001 taaagttggatgacgtaaaattgctttagcatcaaagtaagtaactataaattgcagcatcataatttgtaactctaatattttttt--attttcaatat 745904  T
Q  97 agaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  745903 agaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaattaaaatttggaa 745804  T
Q  197 attattgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||||||    
T  745803 attattgggtaagttggtttattgg 745779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 869896 - 869674
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaa----ctataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatat 96  Q
    |||||||||||||||||||| |||||||||||||||||||    |||||||||||| |||||||||||||||||||||||         |||||||||||    
T  869896 taaagttggatgacgtaaaattgctttagcatcaaagtaagtaactataaattgcagcatcataatttgtaactctaatattttttt--attttcaatat 869799  T
Q  97 agaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  869798 agaggatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttctttctccctatgaaaatgaaattaaaatttggaa 869699  T
Q  197 attattgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||||||    
T  869698 attattgggtaagttggtttattgg 869674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 37781148 - 37781272
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||| ||||| ||||||| ||||||| |||||| ||| |||||||||||||||||||| | ||| |         ||||||||||||||     
T  37781148 taaagttggatgacttaaaattgctttaacatcaaaataactagaaagtgcaacatcataatttgtaattataaca--tgttttgattttcaatatagat 37781245  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||||||||||    
T  37781246 gatgtgttgtgtcaattttagaaatta 37781272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 39918918 - 39919042
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||| ||||| ||||||| ||||||| |||||| ||| |||||||||||||||||||| | ||| |         ||||||||||||||     
T  39918918 taaagttggatgacttaaaattgctttaacatcaaaataactagaaagtgcaacatcataatttgtaattataaca--tgttttgattttcaatatagat 39919015  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||||||||||    
T  39919016 gatgtgttgtgtcaattttagaaatta 39919042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 37675106 - 37675032
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaat 75  Q
    ||||||||||| |||||||| || |||| ||||||| |||||| ||| |||||||||||||||||||||| ||||    
T  37675106 taaagttggataacgtaaaattgttttaacatcaaaataactaaaaagtgcaacatcataatttgtaactataat 37675032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 13248380 - 13248455
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaata 76  Q
    |||||||| ||||| ||||| ||| |||| |||||| |||| | ||| ||||||||  ||||||||||||||||||    
T  13248380 taaagttgcatgacataaaattgcattagtatcaaaataaccaaaaagtgcaacatattaatttgtaactctaata 13248455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 37781280 - 37781321
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||| |||||| |||||||| |||||||    
T  37781280 attttcaatatagaggatttgttgtatcaatttttgaaatta 37781321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 39919050 - 39919091
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||| |||||| |||||||| |||||||    
T  39919050 attttcaatatagaggatttgttgtatcaatttttgaaatta 39919091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 397187 - 397406
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||    
T  397187 taaagttgaatgacgtaaaattgctttagcattaaagtaactataaattgcaacatcataatttgtaactctaatatttttttt-attttcaatatagag 397285  T
Q  101 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttgttccaccctatgaaaatgaaattaaaatttggaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||    
T  397286 gatgtgttgtgtcaattttagaaattaaactaaatttatgatcaaaacatttgttattcttcttcttccctatgaaaatgaaattaaaatttgaaaatta 397385  T
Q  201 ttgggtaagttggtttattgg 221  Q
    |||||||||||||||||||||    
T  397386 ttgggtaagttggtttattgg 397406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 26731 - 26853
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatcaaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatatagag 100  Q
    |||||||||||||| ||||| || |||| ||||||| |||||| ||| ||||||||||||||||||||     |||         ||||| |||||||||    
T  26731 taaagttggatgacataaaattgttttaacatcaaaataactaaaaagtgcaacatcataatttgtaa----tataaatgttttgattttaaatatagag 26826  T
Q  101 gatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||||||||||||    
T  26827 gatgtgttgtgtcaattttagaaatta 26853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Original strand, 26861 - 26902
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
    |||||||||||||||||| ||||||||||||||| |||||||    
T  26861 attttcaatatagaggatttgttgtgtcaatttttgaaatta 26902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 28503 - 28378
Alignment:
Q  1 taaagttggatgacgtaaaaatgctttagcatc-aaagtaactataaattgcaacatcataatttgtaactctaatannnnnnnnnattttcaatataga 99  Q
    |||||||| ||||||||||| ||||||| |||| ||| |||||| ||| |||||||||||||||| ||||| ||| |         ||||||||||||||    
T  28503 taaagttgcatgacgtaaaattgctttaacatcaaaaataactaaaaagtgcaacatcataatttataactataaca--tgttttgattttcaatataga 28406  T
Q  100 ggatgtgttgtgtcaattttagaaatta 127  Q
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T  28405 tgatgtgttgtgtcagttttagaaatta 28378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 127
Target Start/End: Complemental strand, 28370 - 28329
Alignment:
Q  86 attttcaatatagaggatgtgttgtgtcaattttagaaatta 127  Q
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T  28370 attttcaatatagaggatttgttgtgtcaatttttgaaatta 28329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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