View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20519_high_58 (Length: 236)

Name: NF20519_high_58
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20519_high_58
NF20519_high_58
[»] chr1 (1 HSPs)
chr1 (30-115)||(47523651-47523736)
[»] chr8 (1 HSPs)
chr8 (76-108)||(29168558-29168590)
[»] chr3 (1 HSPs)
chr3 (76-112)||(9454650-9454686)
[»] chr2 (1 HSPs)
chr2 (76-108)||(26377360-26377392)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 47523651 - 47523736
Alignment:
Q  30 cagttctgttggttttagtgtcggatggtgaagaatgtagccaatcacgtgccacggcacctcgaccgtgcttcgactttactatg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  47523651 cagttctgttggttttagtgtcggatggtgaagaatgtagccaatcacgtgccacagcacctcgactgtgcttcgactttactatg 47523736  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Complemental strand, 29168590 - 29168558
Alignment:
Q  76 acgtgccacggcacctcgaccgtgcttcgactt 108  Q
    ||||||||| |||||||||||||||||||||||    
T  29168590 acgtgccacagcacctcgaccgtgcttcgactt 29168558  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 9454650 - 9454686
Alignment:
Q  76 acgtgccacggcacctcgaccgtgcttcgactttact 112  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  9454650 acgtgccacagcacctcgaccgtgctttgactttact 9454686  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 26377360 - 26377392
Alignment:
Q  76 acgtgccacggcacctcgaccgtgcttcgactt 108  Q
    ||||||||||||||||| |||||||||||||||    
T  26377360 acgtgccacggcacctccaccgtgcttcgactt 26377392  T

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