View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_high_6 (Length: 523)
Name: NF20519_high_6
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 55696235 - 55696738
Alignment:
| Q |
1 |
tttgcacaatgcatttaccttggaacgcaagaaaaccgatgctatcgccaaaccaaacgtatacataacacatttcagaaagtgttcgagaatgcgctgc |
100 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696235 |
tttgaacaatgcatttaccttggaatgcaagaaaactgatgctatcgccaaaccaaacgtatacataacacatttcagaaagtgttcgagaatgcgctgc |
55696334 |
T |
|
| Q |
101 |
tagcacttcacaaacttaattgttgtgccacactcccgatgacgaaccagcagctattaactagaatgtagatatnnnnnnnnnntccttcaaatcatgt |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||| |
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| T |
55696335 |
tagcacttcacaaacttaatggttgtgccacactcccgatgacgaaccagcagctattaacttgaatgtagatataaaaaaaaa-tccttcaaatcctgt |
55696433 |
T |
|
| Q |
201 |
attattaatattttatccatataaacatttgaccaagatcaataaaattacatcccttgactactttccaaaacagaactttgacaactttctcaaagta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
55696434 |
attattaatattttatccatataaacatttgaccaagatcaataaaattacatcccttgactactttccaaaacagaactttgataactttctcaaagta |
55696533 |
T |
|
| Q |
301 |
tccaactagaggacaacagatgggatgctcctatagtctgtacaaagctgcagaacaataattctatgtgcagtcaaatcaaaaccagtttctttccaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55696534 |
tccaactagaggacaacagatgggatgctcctatagtctgtacaaagctgcagaacgataattctatgtgcagtcaaatcaaaaccagtttctttccaga |
55696633 |
T |
|
| Q |
401 |
ttgcaggtatgttcaccaagtaccaaaactagagccaatatgttcttgggtaatgactttaagtcgagcttgcatgacaggcatagatgaataagctggg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55696634 |
ttgcaggtatgttcaccaagtaccaaaactagagccaatatgttcttgggtaatgactttaagacgagcttgcatgacaggcatagatgaataagctggg |
55696733 |
T |
|
| Q |
501 |
aaaca |
505 |
Q |
| |
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||||| |
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|
| T |
55696734 |
aaaca |
55696738 |
T |
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