View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20519_high_61 (Length: 234)
Name: NF20519_high_61
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_61 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24163851 - 24163630
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24163851 |
tggggccaaccaaagtcaaagatcacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
24163752 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24163751 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
24163652 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
24163651 |
ttctcgtgtgttggttgtttgt |
24163630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 5289758 - 5289537
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
5289758 |
tggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcacaaaactcttgggtc |
5289659 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
5289658 |
ttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaagg |
5289559 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
5289558 |
tgctcgtgtgttggttgtttgt |
5289537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5284369 - 5284590
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| |||||||| |||||||| |||||||| |||| |
|
|
| T |
5284369 |
tggggccaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggagccgattatcaactcaccaaactcttgggtc |
5284468 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || || ||||||||||||||||| |
|
|
| T |
5284469 |
ttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggtacggtacttcgtttggccaaagatttagctgagaacaacaaagg |
5284568 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
5284569 |
tgctcgtgtgttggttgtttgt |
5284590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5310458 - 5310679
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| || ||||| ||||||||||||||||| || | |
|
|
| T |
5310458 |
tggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcctggagctgattatcaactcacaaaactcttgggcc |
5310557 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
5310558 |
ttcgtccatatgtgaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatttggctgagaacaacaaagg |
5310657 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
5310658 |
tgctcgtgtgttggttgtttgt |
5310679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 46707049 - 46706828
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| |||| |
|
|
| T |
46707049 |
tggggtcaaccaaagtcaaagattacccacttaatcgtttgcactactagtggtgtagacatgcctggagctgattaccaactcacaaaactcttcggtc |
46706950 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| || |||||||| ||||||| ||||| ||||| || || |||||||||||||||||||| |
|
|
| T |
46706949 |
ttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggggcttcgtttggctaacgatttggctgagaacaacaaagg |
46706850 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| | ||||| |||||||||||| |
|
|
| T |
46706849 |
tgcccgtgtattggttgtttgt |
46706828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 5302557 - 5302774
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||| | |||||||||||| ||||| | || ||||| |||||||| |||||||| |||| |
|
|
| T |
5302557 |
tggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgtagacatgcccgaagctgattatcaactcaccaaactcttgggtc |
5302656 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| || | ||||||||||||||||| |
|
|
| T |
5302657 |
ttcgcccatatgtgaaaaggtacatgatgtaccaacaagggtgttttgcaggtggcacggtgcttcgtttggccaaagatctagctgagaacaacaaagg |
5302756 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgt |
218 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
5302757 |
tgctcgtgtgttggttgt |
5302774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5315172 - 5315393
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||| | ||||||||| || |||||||| || ||||| |||||||| ||||| ||||||| |
|
|
| T |
5315172 |
tggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagtggtgttgacatgcctggagcagattatcaactcaccaaactattaggtc |
5315271 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||||||||| ||| ||||| || |||||||||||||||||||| ||||||||||||||||| || || ||||| || || |||||||||||||||||||| |
|
|
| T |
5315272 |
ttcgcccatatgtgaaaagatacatgatgtaccaacaagggtgctttgcaggtggcacggtgctccgtttggctaaagatttggctgagaacaacaaagg |
5315371 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
5315372 |
tgctcgtgtgttggttgtttgt |
5315393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 98
Target Start/End: Complemental strand, 32531019 - 32530972
Alignment:
| Q |
51 |
tggtgtagatatgcctggtgccgattaccaactcacaaaactcttagg |
98 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
32531019 |
tggtgtagacatgccgggtgccgattaccaactcactaaactcttagg |
32530972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1478060 - 1478281
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || |||||||| | |||||||||||| |||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
1478060 |
tggggccaaccaaaatcaaagattacacacttgatcttttgcaccacaagtggtgtagacatgcctggcgctgattaccaactcaccaaactcttaggtc |
1478159 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
|||| |||| ||| || ||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
1478160 |
ttcgtccatatgtgaagaggtatatgatgtaccaacaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaataaagg |
1478259 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
1478260 |
tgctcgtgtgttggttgtttgt |
1478281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1482254 - 1482475
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || | |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1482254 |
tggggccaaccaaaatcaaagattacacacttaatattttgtaccacaagtggtgtagacatgcctggtgccgattaccaactcacaaaactcttaggtc |
1482353 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
|||| |||| ||| || || || ||||||||||||||||| || ||||||||||| ||||| ||||| ||||||||||||||||||||||| || ||||| |
|
|
| T |
1482354 |
ttcgtccatatgtgaagagatacatgatgtaccaacaaggatgctttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaataataaagg |
1482453 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
1482454 |
tgctcgtgtgttggttgtttgt |
1482475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1492229 - 1492450
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||| | ||| |||||||| |||||||| |||||||| |||||||| ||||||||||||| |
|
|
| T |
1492229 |
tggggtcaaccaaagtcaaagattactcacttaatcgtttgcaccacaagcggtgtagacatgcctggggccgattatcaactcactaaactcttaggtc |
1492328 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
|||| |||| ||||||||| || ||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
1492329 |
ttcgtccatatgtaaaaagatacatgatgtaccagcaaggttgttttgcaggtggcacggtacttcgtttggctaaggatttggctgagaacaacaaagg |
1492428 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| |||||||||| ||||||||| |
|
|
| T |
1492429 |
tgctcgtgtgttagttgtttgt |
1492450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1505038 - 1505255
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| || ||||||||||||||||| |||||||| ||||||| | |||||||||||| |||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
1505038 |
tggggtcagccaaagtcaaagattactcacttaattgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcaccaaactcttaggtc |
1505137 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||||||||| ||| || ||||| ||||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1505138 |
ttcgcccatatgtgaagaggtacatgatgtaccagcaaggatgttttgcaggtgggacggtgcttcgtttggccaaggacttggctgagaacaacaaagg |
1505237 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgt |
218 |
Q |
| |
|
| | |||||||||||||| |
|
|
| T |
1505238 |
tgcccgtgtgttggttgt |
1505255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1499301 - 1499522
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcac-tataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggt |
99 |
Q |
| |
|
||||| ||||| |||||||| |||||||| ||||| |||||||| |||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
1499301 |
tggggtcaaccgaagtcaaatattacacatttaattttttgcacctata-gtggtgtagacatgcctggtgcggattaccaactaacaaaactcttaggt |
1499399 |
T |
|
| Q |
100 |
cttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaag |
199 |
Q |
| |
|
||| ||||| ||| |||||||| ||||||||||||| |||||||| ||||||||| || |||||||| ||||| |||||||| |||||||| ||||||| |
|
|
| T |
1499400 |
cttaacccatatgtgaaaaggtacatgatgtaccaactagggtgttatgcaggtggaacagtacttcgtttggcgaaggacttagctgagaataacaaag |
1499499 |
T |
|
| Q |
200 |
gttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
1499500 |
gtgctcgtgtgttggttgtttgt |
1499522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 1486733 - 1486945
Alignment:
| Q |
3 |
gggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtctt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1486733 |
gggccaaccaaagtcaaagattacacacttaatattttgcaccatgagtggtataggcatgcctggtgccgattaccaactcacaaaactcttaggtctt |
1486832 |
T |
|
| Q |
103 |
cgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaaggtt |
202 |
Q |
| |
|
|||| ||| ||| |||||||||| ||||||||||| || |||||||| ||||| || || || | |||||||||||||||||||||||| |||| | |
|
|
| T |
1486833 |
tgcccggatgtgaaacggtatatgatataccaacaaggatgctttgcagggggcactgttctacgttaggccaaggacttggctgagaacaataaagatg |
1486932 |
T |
|
| Q |
203 |
ctcgtgtgttggt |
215 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
1486933 |
ctcttgtgttggt |
1486945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1509185 - 1509406
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||| |||||||| | ||||||||| |||||| |||| || |||| ||||| || ||||| ||||||| |
|
|
| T |
1509185 |
tggggccagccaaaatcaaagattacacatttaatcttttgcaccacaagtggtgttgatatgtctggagctcattatcaacttaccaaacttttaggtc |
1509284 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||| ||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| || |||| ||||| ||||| |||||||| || ||| ||| |
|
|
| T |
1509285 |
ttcacccatatgtaaaaaggtacatgatgtaccaacaaaggtgttttgcaggtggcactgtgcttcatttggcaaaggatttggctgaaaataaccaaga |
1509384 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
1509385 |
tgctcgtgtgttggttgtttgt |
1509406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 44128635 - 44128852
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || ||||||| | |||||||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
44128635 |
tggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtc |
44128734 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||| || || || ||||| ||||||||||| |
|
|
| T |
44128735 |
ttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaagg |
44128834 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgt |
218 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
44128835 |
tgctcgtgtgttggttgt |
44128852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 44132840 - 44133057
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || ||||||| | |||||||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
44132840 |
tggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtc |
44132939 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||| || || || ||||| ||||||||||| |
|
|
| T |
44132940 |
ttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaagg |
44133039 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgt |
218 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
44133040 |
tgctcgtgtgttggttgt |
44133057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 44141262 - 44141479
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || ||||||| | |||||||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
44141262 |
tggggtcaaccaaagtcaaagattactcacttgatcgtttgcaccacaagtggtgtagacatgcctggagctgattaccaactcacaaaactcttaggtc |
44141361 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||| || || || ||||| ||||||||||| |
|
|
| T |
44141362 |
ttcgcccatatgtgaaaaggtatatgatgtaccaacaaggttgctttgcaggaggcacggtccttcgtttggctaaagatttagctgaaaacaacaaagg |
44141461 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgt |
218 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
44141462 |
tgctcgtgtgttggttgt |
44141479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37863451 - 37863230
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| ||||| |||||||||||||| || |||| |||||||| | ||||||||| |||||||||||||| || || || |||||||| ||||| |||| |
|
|
| T |
37863451 |
tggggtcaacctaagtcaaagattactcatctaattttttgcaccacaagtggtgtggatatgcctggtgctgactatcagctcacaaagctcttgggtc |
37863352 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
||||||| | ||| || | ||||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||| || || |||||||| ||||||||||| |
|
|
| T |
37863351 |
ttcgcccgtatgtgaagcgttatatgatgtatcaacaaggttgttttgctggtgggacggtgcttcgtttggctaaagatttggctgaaaacaacaaagg |
37863252 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
37863251 |
cgctcgtgttttggtggtttgt |
37863230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 37859425 - 37859204
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| ||||| ||||| |||||||| ||| | || |||||||| | ||||| || || ||||| |||||||| || || || ||||| ||||| || | |
|
|
| T |
37859425 |
tggggtcaacctaagtccaagattacccacctcatcttttgcaccaccagtggcgtggacatgcccggtgccgactatcagctgacaaagctcttgggcc |
37859326 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
|||| |||| ||| || | || ||||||||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||||||| |
|
|
| T |
37859325 |
ttcgtccatatgtgaagcgttacatgatgtaccaacaaggttgttttgctggtggcacggtgcttcgtttggctaaagacttggctgaaaacaacaaagg |
37859226 |
T |
|
| Q |
201 |
ttctcgtgtgttggttgtttgt |
222 |
Q |
| |
|
| ||||||||||||| |||||| |
|
|
| T |
37859225 |
tgctcgtgtgttggtagtttgt |
37859204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 39030132 - 39030344
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| ||||| ||||||| | |||| || | |||||||||||| ||||||||| ||||||||||| || || || || |||||||| |||||||| | |
|
|
| T |
39030132 |
tggggtcaacctaagtcaatggttactcatctcatattttgcacttcaagtggtgtcgatatgcctggagctgactatcagctcacaaagctcttaggcc |
39030231 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
|| | |||| |||||| | |||||||||||||||||||| |||||||| |||| | || ||||||||||| || || |||||||||||||||||||| |
|
|
| T |
39030232 |
tttgtccatatgtaaagcgttatatgatgtaccaacaaggttgttttgctggtgcgatggctcttcgcttggctaaagatttggctgagaacaacaaagg |
39030331 |
T |
|
| Q |
201 |
ttctcgtgtgttg |
213 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
39030332 |
tgcccgtgtgttg |
39030344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 35250872 - 35251080
Alignment:
| Q |
1 |
tggggccaaccaaagtcaaagattacacacttaatattttgcactataagtggtgtagatatgcctggtgccgattaccaactcacaaaactcttaggtc |
100 |
Q |
| |
|
||||| ||||||||||| ||||| || ||| | |||||||||| || |||||||| |||||||||||||| ||||| || ||||||||| | |||| | |
|
|
| T |
35250872 |
tggggtcaaccaaagtccaagatcactcacctcatattttgcattactagtggtgtggatatgcctggtgctgattatcagctcacaaaattgctaggac |
35250971 |
T |
|
| Q |
101 |
ttcgcccatgtgtaaaaaggtatatgatgtaccaacaagggtgttttgcaggtggcacggtacttcgcttggccaaggacttggctgagaacaacaaagg |
200 |
Q |
| |
|
|||| || | || ||| | |||||||||||||||||||||||||| || ||||| | ||| ||||| ||||| || || |||||||||||||| ||||| |
|
|
| T |
35250972 |
ttcgtccgtcggtgaaacgttatatgatgtaccaacaagggtgtttcgctggtggtatggttcttcgtttggctaaagatttggctgagaacaataaagg |
35251071 |
T |
|
| Q |
201 |
ttctcgtgt |
209 |
Q |
| |
|
| ||||||| |
|
|
| T |
35251072 |
tgctcgtgt |
35251080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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