View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_high_65 (Length: 227)
Name: NF20519_high_65
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 31458147 - 31457938
Alignment:
| Q |
1 |
gatgttgcttgggtgaaatgattaattagaagctaatatgattgagctaattaatattttaataaatgaatcaatgtgttacatgtgttttgttttggta |
100 |
Q |
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| T |
31458147 |
gatgttgcttgggtgaaatgattaattagaagctaatatgattgagctaattaatattttaataaatgaatcaatgtgttacatgtgttttgttttggta |
31458048 |
T |
|
| Q |
101 |
gaaaatgtgtta-aagtgtttctcgtcattagaataatggatgtaaatagaaaaatgatttggtattggcaattactttgataaagatcataaatcatga |
199 |
Q |
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| T |
31458047 |
gaaaatgtgttacatgtgtttctcatcattagaataatggatgtaaatagaaaaatgatttggtattggcaattactttgataatgatcataaatcatga |
31457948 |
T |
|
| Q |
200 |
tagttagtgt |
209 |
Q |
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|||||||||| |
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| T |
31457947 |
tagttagtgt |
31457938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 31468041 - 31467840
Alignment:
| Q |
3 |
tgttgcttgggtgaaatgattaattagaagctaatatgattgagctaattaatattttaataaatgaatcaatgtgttacatgtgt-----tttgttttg |
97 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||| ||||||| ||| ||||| |
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| T |
31468041 |
tgttgcttaggtgaaatgattagttagaagctaatatgattgagctaa---attttttgttaaatgaatcaatgtgttgcatgtgtgttttttttttttg |
31467945 |
T |
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| Q |
98 |
gtagaaaatgtgtta-aagtgtttctcgtcattagaataatggatgtaaatagaaaaatgatttggtattggcaattactttgataaagatcataaatca |
196 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
31467944 |
gtagaaaatgtgttacaagtgtttctcatcattagaataataaatgtaaatagtaaaatgatttggtattggcaataactttgataatgatcataaatca |
31467845 |
T |
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| Q |
197 |
tgata |
201 |
Q |
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||||| |
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| T |
31467844 |
tgata |
31467840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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