View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_high_7 (Length: 502)
Name: NF20519_high_7
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_high_7 |
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| [»] scaffold1532 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 7 - 481
Target Start/End: Complemental strand, 48477011 - 48476531
Alignment:
| Q |
7 |
gtgagatgaatcatttgtggtaatctaatttaattttagcttgttcaacaataaaaaaggatcaaacaagctgaaggtcggaaaattttaaaatttcttc |
106 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48477011 |
gtgagatgaatcatttgtggtactctaatttaattttagcttgttcaacaataagaaaggatcaaacaagctgaaggtcggaaaattttaaaatttcttc |
48476912 |
T |
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| Q |
107 |
nnnnnnnnnnnnnnnnnnnn--catttcaagagacatgtgactatgaccagtaaccgactattatttatgatttcaaatttgaatggtaaattttaaaat |
204 |
Q |
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| T |
48476911 |
tcttttttattttttattttttcatttcaagagacatgtgactatgaccagtaaccgactattatttatcatttcaaatttgaatggtaaattttaaaat |
48476812 |
T |
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| Q |
205 |
ttaccatgtaagaatgatgatggaagatnnnnnnn-gtatgtgcttatttttaaaaatttagttattatttaatgggataaaatggacaactaacnnnnn |
303 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| |
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| T |
48476811 |
ttaccatgtaagaatgatgatggaagatacaaaaaagtatgtgcttattttaaaaattttagttatt---taatgggataaaatggacaactaatttttt |
48476715 |
T |
|
| Q |
304 |
nnn--atcggatagtctagtgtctaaaactcaacccttgcatatcgtattgtctctatcaactgaattatgctcacgaagagataaaattagtagtttaa |
401 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48476714 |
tttttatcggatagtctagtgtctaaaactcaacccttgtatatcgtattgtctctatcaactgaattatgctcacgaagagataaaattagtagtttaa |
48476615 |
T |
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| Q |
402 |
gtaaatactaaaataaagagaaaaattactacattgaaaactttt----tgtgtgtgtattaccttaaaacattatgcaccctg |
481 |
Q |
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| T |
48476614 |
gtaaatactaaaataaagagaaaaattactacattgaaaactttttttgtgtgtgtgtattaccttaaaacattatgcaccctg |
48476531 |
T |
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Target: scaffold1532 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1532
Description:
Target: scaffold1532; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 1247 - 1307
Alignment:
| Q |
384 |
ataaaattagtagtttaagtaaatactaaaataaagagaaaaattactacattgaaaactt |
444 |
Q |
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||||| |||||||||||| ||||| |||||||| ||||||| |||||||| ||| ||||| |
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| T |
1247 |
ataaagttagtagtttaaataaatggtaaaataaggagaaaagttactacaatgataactt |
1307 |
T |
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