View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_1 (Length: 1019)
Name: NF20519_low_1
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 962; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 962; E-Value: 0
Query Start/End: Original strand, 20 - 1004
Target Start/End: Complemental strand, 6316027 - 6315042
Alignment:
| Q |
20 |
tgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatattaggatcggatca |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6316027 |
tgtttaacatctgtcgtggctgctgttatttcatcagtttagtacccattgcgatctattgccgctgtgtttgttctgcttgcatattaggatcggatca |
6315928 |
T |
|
| Q |
120 |
atgtgcagcattcatttgtaagcttaggtaggtgtggcgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaagatgcttgtgagt |
219 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315927 |
atgtgcagcattcatttgtaagcttaggtaggtgtgccgtgtgtgttaaataattggctttatttgatctgtaacattatagtacaagatgcttgtgagt |
6315828 |
T |
|
| Q |
220 |
tgtgaccaatactgtaatcttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataacaatctaatgacagttct |
319 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315827 |
tgtgaccaatactgtaatcttttttatcattggtatggttgtgatcataatgtaatgacaattcttcctttgcaaaagataacaatctaatgacagttct |
6315728 |
T |
|
| Q |
320 |
agtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttatttaaagtaacaaatccatatcatttcttcaat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315727 |
agtatggaagtggtggatattcattgcgcttttcaaattttggttaccttgcaaacataaacgtttatttaaagtaacaaatccatatcatttcttcaat |
6315628 |
T |
|
| Q |
420 |
aatcaaaggaattttgtgactagcagtaaatgagatacttttgctaacggatgagcaacttgattggcttgcatccttataaaattaacccttaagtttg |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315627 |
aatcaaaggaattttgtgactagcagtaaatgagatacttttgctaacggatgagcaacttgattggcttgcatccttataaaattaacccttaagtttg |
6315528 |
T |
|
| Q |
520 |
gttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagccaaaaactatgagccattgtattaacaaccaatttgcagtca |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315527 |
gttttacattaatacggcctctccattttgaaatcatggatctaaactcagttatagccaaaaactatgagccattgtattaacaaccaatttgcagtca |
6315428 |
T |
|
| Q |
620 |
gtcacaattgtccccgtactatttgctcactccataaccctccataaagccatcacttcatcttcatttgtaaagggat-ccatctgcccaacaagtctc |
718 |
Q |
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| T |
6315427 |
gtcacaattgtccccgtactatttgctcactccataaccctccataaagccgtcacttcatcttcatttgtaaagggatcccatctgcccaacaagtctc |
6315328 |
T |
|
| Q |
719 |
cgttgctactaatccacctgttgccatatgacaagtacccctgttgtggttttttccatctactatatgcctcgtgttaatctccaaattctaagtattt |
818 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315327 |
cgttgctactaatccacctgttgccatatgacaagtacccctgttgtggtcttttccatctactatatgcctcgtgttaatctccaaattctaagtattt |
6315228 |
T |
|
| Q |
819 |
tgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatattccaaagctgcttacttcttctcttccat |
918 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6315227 |
tgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattgttgccaggcatattccaaagctgcttacttcttctcttccat |
6315128 |
T |
|
| Q |
919 |
atattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaactctgcacatgatga |
1004 |
Q |
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| T |
6315127 |
atattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatgacagtaaaaataaattctgcacatgatga |
6315042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 942 - 1004
Target Start/End: Complemental strand, 6318236 - 6318172
Alignment:
| Q |
942 |
accattcataatcattgttgtgcagttgttgatgacagtaaaaataaa--ctctgcacatgatga |
1004 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||||||||| |
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| T |
6318236 |
accattcataatccttgttgtgcagctgttgatgacagtaaaattaaattctctccacatgatga |
6318172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 167 - 342
Target Start/End: Complemental strand, 51819827 - 51819641
Alignment:
| Q |
167 |
aaataattggctttatttgatctgtaacattatagtacaagatgcttgtgagttgtg----accaatactgtaatctttttt----atcattggtatggt |
258 |
Q |
| |
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|||||||||||||| | ||||||||| || ||| |||||||||||||||||||||| || |||||| |||||||||| |||| ||||| ||| |
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| T |
51819827 |
aaataattggctttgtctgatctgtatcacaataatacaagatgcttgtgagttgtgtgtgactaatactacaatcttttttttttatcaatggtacggt |
51819728 |
T |
|
| Q |
259 |
tgtgatcataatgtaatgacaattcttcctttgcaaaagataa---caatctaatgacagttctagtatggaagtggtggatattca |
342 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||| |||| |||| ||||||| |||||||||| ||| |||||||||||||||| |
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| T |
51819727 |
tgttatcataatgtaatgacaattcctcctttgaaaaatataatactaatctaaatacagttctagcatgaaagtggtggatattca |
51819641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 55323510 - 55323357
Alignment:
| Q |
20 |
tgtttaacatctgtcgtggctgct-gttatttcatcagtttagtacccattg-cgatctattgccgctgtgtttgttctgct-----tgcatattaggat |
112 |
Q |
| |
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|||||||||||||| |||||| | ||||||||||||||||||||||||||| |||| | ||||||||||||||| |||||| || ||||||||| |
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| T |
55323510 |
tgtttaacatctgttgtggcttattgttatttcatcagtttagtacccattgacgatgtgttgccgctgtgtttgctctgctgcatttgtatattaggac |
55323411 |
T |
|
| Q |
113 |
cggatcaatgtgcagcattcatttgta-agcttaggtaggtgtggcgtgtgtgt |
165 |
Q |
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| |||||||||||| |||||||||||| ||||||||||||||| |||||||| |
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| T |
55323410 |
ccgatcaatgtgcaacattcatttgtagtgcttaggtaggtgtgcggtgtgtgt |
55323357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 452 - 509
Target Start/End: Complemental strand, 55322887 - 55322830
Alignment:
| Q |
452 |
agatacttttgctaacggatgagcaacttgattggcttgcatccttataaaattaacc |
509 |
Q |
| |
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|||||||||| |||| | |||||||||||| ||| |||| ||||||||||||||||| |
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| T |
55322887 |
agatactttttctaatgaatgagcaacttgtttgacttgtctccttataaaattaacc |
55322830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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