View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_10 (Length: 475)
Name: NF20519_low_10
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 13 - 463
Target Start/End: Original strand, 47523171 - 47523620
Alignment:
| Q |
13 |
tgaattgcatacattacattttttgcgagagataatgatgtatcaactgtttagttctagctatatggtttgctagtgaattatgtaaagaattgagttt |
112 |
Q |
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| T |
47523171 |
tgaattgcatacattacattttttgcgagagataatgatgtatcaactgtttagttctagctatatggtt-gctagtgaattatgtaaagaattgagttt |
47523269 |
T |
|
| Q |
113 |
ttgttgatgttgtcgtcgtcgtcgacttgatttatgattgaattggcgtgtgacatgtttgatggtaagatagaaaccattcagagtggatcgaggagca |
212 |
Q |
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| T |
47523270 |
ttgttgatgttgtcgtcgtcgtcgacttgatttatgattgaattggcgtgtgacatgtttgatggtaagatagaaaccgttcagagtggatcgaggagca |
47523369 |
T |
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| Q |
213 |
gagtggctgacctccaaagcggtatagaggatagtgaccaatatttaggacattcttaattaataatagaagtttatcttgattattttcaagtaattgg |
312 |
Q |
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| T |
47523370 |
gagtggctgacctccaaagcggtatagaggatagtgaccaatatttaggacattcttaattaataatagaagtttatcttgattattttcaagtaattgg |
47523469 |
T |
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| Q |
313 |
attggatttttatttgtgttaaggtggtctgctgtttgaacaggaaatgaaaattgccttgctctttcaatttgtccttcagttggtctaggggcttttt |
412 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47523470 |
attggatttttatttgtgttaaggtggtctggtgtttgaacaggaaatgaaaattgccttgctctttcaatttgtccttcagttggtctaggggcttttt |
47523569 |
T |
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| Q |
413 |
gtattgattgtaatctagtttggattggatcatattggtgagtctgatctg |
463 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
47523570 |
gtattgattgtaatctagtttggattggatcatattggtgaatctgatctg |
47523620 |
T |
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