View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_11 (Length: 459)
Name: NF20519_low_11
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 48545062 - 48544618
Alignment:
| Q |
1 |
tcaggcgtatttttatcggtaaatgaattttctttaatgatctatataaaaaatgagatccttcnnnnnnnnnnnnnnt---gagaagatggaggtggag |
97 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48545062 |
tcaggtgtatttttatcggtaaatggattttctttaatgatctatataaaaaatgagatccttcaaaaaaaaaaaaaaaaacgagaagatggaggtggag |
48544963 |
T |
|
| Q |
98 |
ccaagttactaggaactacaaaagaaatattcgtccttctttggcacca--caaaacttttgctgttaatannnnnnnaccagttcttctaaaatcgttg |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48544962 |
ccaagttactaggaactacaaaagaaatattcgtccttctttggcaccaaacaaaacttttgctgttaatatttttt-accagttcttctaaaatcgttg |
48544864 |
T |
|
| Q |
196 |
attttttcacattatttccttatactcattttgcatattttgtttcccctgctttcttatcatttcccataatatctctactattctcgtcatagttaca |
295 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48544863 |
attttttcacattatttccttatactcattt-gcatattttgtttcccatgctttcttatcatttcccataatatctctattattctcgtcatagttaca |
48544765 |
T |
|
| Q |
296 |
tataa----atgtagggttgaataactcaactgatttgaactaaaggataaagagttcgtgatcctagtacaaaccctatgaaggagaaaaattgatctt |
391 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||| ||| ||||| ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
48544764 |
tataattaaatgtagggttggataactcaactgatttgaactaa----taaggagttggtggtcctagtacaacccctatgaaggagaaaaattgatctt |
48544669 |
T |
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| Q |
392 |
aacaactaagttacaaatatttaacattaaacgctcatcattgaatatctt |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48544668 |
aacaactaagttacaaatatttaacattaaacgctcatcattgaatatctt |
48544618 |
T |
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