View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_14 (Length: 449)
Name: NF20519_low_14
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 270
Target Start/End: Complemental strand, 37624834 - 37624578
Alignment:
| Q |
15 |
agatagactcaaatagttatagttgttggtcccatattgcgttgcacttgaaaggaacttttaacatgcatgtaccattgtttcattgttactttctttt |
114 |
Q |
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| T |
37624834 |
agatagactcaaatagttatagttgttggtcccatattgcgttgcacttgaaaggaacttttaacatgcatgtaccattgtttcattgtcagtttctttt |
37624735 |
T |
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| Q |
115 |
gcggtccagggcctttccacaagctttcaaaccaaaaaataagataggtgctatctataaagaaagttaaacttaataatgtaatttaaaag-nnnnnnn |
213 |
Q |
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| T |
37624734 |
gcggtccagggcctttccacaagctttcaaaccaaaaaataagataggtgctatctataaagaaagttaaacttaataatgtaatttaaaagaaaaaaaa |
37624635 |
T |
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| Q |
214 |
tcaatgttaatctatgtcgtgacaacaattttatcaacagataaaaaaggcaagaca |
270 |
Q |
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| T |
37624634 |
tcaatgttaatctatgtcgtgacaacaattttatcaacaaataaaaaaggcaagaca |
37624578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 309 - 440
Target Start/End: Complemental strand, 37624579 - 37624448
Alignment:
| Q |
309 |
cattgttgagtttgtgcttcaatcaatctatgtcatatacactctatggaaagattaatttcataggagtcttgagccaaaaccctaattatgatgagtt |
408 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37624579 |
cattgttgagtctgtgcttcaatcaatctatgtcatatacactctatggaaagattaatttcataggagtcttgagccaaaaccctaattatgatgagtt |
37624480 |
T |
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| Q |
409 |
tttactttataccaaaaatacatatgatgatg |
440 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
37624479 |
tttactttataccaaaaatacatatgatgatg |
37624448 |
T |
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