View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_15 (Length: 448)
Name: NF20519_low_15
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 42256500 - 42256095
Alignment:
| Q |
1 |
acgcaactatagttaatgtcttgaagtggcgtgatcaatttgaggctaaatttgatcagcagctattttgagccaaggaaaggttcaggttactattttc |
100 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||| |
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| T |
42256500 |
acgcaactatatttaatgtcttgaagtggcgtgatcaatttgaggctaaatttgatcagtagctattttgagccaaggaaaagtccaggttattattttc |
42256401 |
T |
|
| Q |
101 |
atcatttaagctccggtttatattatactatcatacaattacttttagttgttgtttatcttcacatgctggttggagtcatcaaatatagaatattaat |
200 |
Q |
| |
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|| ||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42256400 |
atgatttaagcttcggtttatattatattatcgtacaattacttttggttgttgtttatcttcacatgctggttggagtcatcaaatatataatattaat |
42256301 |
T |
|
| Q |
201 |
tacattattcttgtgat--------------attgagctagacgaatataagggaatttgagaaattagtagcatcttaaagaactttaaaatggtagat |
286 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42256300 |
tacatgattcttgtgatattggcttatttgaattgagctagacgaatataagggaatttgagaaattagtagcatcttaaagaactttaaaatggtagat |
42256201 |
T |
|
| Q |
287 |
taattcatctttgtggattatcattatttgaaagaaatattatggtctatattctcactttgtggactaattgatcattgttgtttgtgcttgcaatagg |
386 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42256200 |
t-attcatctttgtggattatcattatttgaaagaaatattgtggtctttattctcactttgtggactaattgatcattgttgtttgtgcttgcaatatg |
42256102 |
T |
|
| Q |
387 |
tgtaaat |
393 |
Q |
| |
|
||||||| |
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|
| T |
42256101 |
tgtaaat |
42256095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 19934920 - 19934510
Alignment:
| Q |
1 |
acgcaactatagttaa-tgtcttgaagtggcgtgatcaatttgaggctaaatttgatcagcagctattttgagccaaggaaaggttcaggttactatttt |
99 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||||||||||| |
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| T |
19934920 |
acgcaactatagttaaatgtcttgaagtggcgtgatcaatttgaggataaatttgatcagtagctattttgagccaaggaaaagtccaggttactatttt |
19934821 |
T |
|
| Q |
100 |
catcatttaagctccggtttatattatactatcatacaattacttttagttgttgtttatcttcacatgctggttggagtcatcaaatatagaat---at |
196 |
Q |
| |
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|||||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19934820 |
catcatttaacctccggtttatattatattatcgtacaattacttttggttgttgtttatcttcacatgctggttggagtcatcaaatatagaatattat |
19934721 |
T |
|
| Q |
197 |
taattacattattcttgtgat--------------attgagctagacgaatataagggaatttgagaaattagtagcatcttaaagaactttaaaatggt |
282 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19934720 |
taattacatgattcttgtgatattggcttatttgaattgagctagacgaatataagggaatttgagaaattagtagcatcttaaagaactttaaaatggt |
19934621 |
T |
|
| Q |
283 |
agattaattcatctttgtggattatcattatttgaaagaaatattatggtctatattctcactttgtggactaattgatcattgttgtttgtgcttgcaa |
382 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| | |||| |||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
19934620 |
agattaattgatctttgtggattatcattatttgaaagaaatattgttgtctttattctcattttgtggactaattgatcattgttttttgtgcttgcaa |
19934521 |
T |
|
| Q |
383 |
taggtgtaaat |
393 |
Q |
| |
|
|| |||||||| |
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|
| T |
19934520 |
tatgtgtaaat |
19934510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 388 - 431
Target Start/End: Complemental strand, 19934368 - 19934325
Alignment:
| Q |
388 |
gtaaatttttattgtgagatttagaactaattaaggtgattagt |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19934368 |
gtaaatttttattgtgagatttagaactaattaaggtgattagt |
19934325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 385 - 427
Target Start/End: Complemental strand, 42255958 - 42255916
Alignment:
| Q |
385 |
ggtgtaaatttttattgtgagatttagaactaattaaggtgat |
427 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
42255958 |
ggtgtaaatttttattgtgagatttagaaataattaaggtgat |
42255916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 6671061 - 6670663
Alignment:
| Q |
1 |
acgcaactatagttaatgtcttgaagtggcgtgatcaatttgaggctaaatttgatcagcagctattttgagccaaggaaaggttcaggttactattttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| | || || ||||||||||||||||||||| || ||||||||||||||| |
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|
| T |
6671061 |
acgcaactatagttaatgtcttgaagtggcatgatcaatttgaggctaaatattattagtagctattttgagccaaggaaaagtccaggttactattttc |
6670962 |
T |
|
| Q |
101 |
atcatttaagctccggtttatattatactatcatacaattacttttagttgttgtttatcttcacatgctggttggagtcatcaaatatagaatattaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6670961 |
atcatttaagctccggtttatattatattatcgtacaattacttttggttgttgtttatcttcacatgctggttggagtcatcaaatatagaatattaat |
6670862 |
T |
|
| Q |
201 |
tacattattcttgtgat--------------attgagctagacgaatataagggaatttgagaaattagtagcatcttaaagaactttaaaatggtagat |
286 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6670861 |
tacatgattcttgtgatattggcttatttgaattgagctagacgaatataagggaatttgagaaattagtagcatcttaaagaactttaaaatggtagat |
6670762 |
T |
|
| Q |
287 |
taattcatctttgtggattatcattatttgaaagaaatattatggtctatattctcactttgtggactaattgatcattgttgtttgtgcttgcaatagg |
386 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||| |||||||||||||| |||||| | ||||||||||||||||||||||||| | |
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|
| T |
6670761 |
taattcatc--------ttatcattatttgaaagaaatattgtggtctttattctcactttgtagactaacttatcattgttgtttgtgcttgcaatatg |
6670670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 248 - 379
Target Start/End: Complemental strand, 5695579 - 5695448
Alignment:
| Q |
248 |
gaaattagtagcatcttaaagaactttaaaatggtagattaattcatctttgtggattatcattatttgaaagaaatattatggtctatattctcacttt |
347 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || ||| || | | |||||| |||| |||||||||||| |
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|
| T |
5695579 |
gaaattagtagcatcttaaagaacttcaaattggtagattaattcatctttgtggattattgttgtttcaatgtattattatagtctttattctcacttt |
5695480 |
T |
|
| Q |
348 |
gtggactaattgatcattgttgtttgtgcttg |
379 |
Q |
| |
|
||||| |||||||||||| || || ||||||| |
|
|
| T |
5695479 |
gtggattaattgatcatttttattggtgcttg |
5695448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 431
Target Start/End: Complemental strand, 6670628 - 6670585
Alignment:
| Q |
388 |
gtaaatttttattgtgagatttagaactaattaaggtgattagt |
431 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6670628 |
gtaaatttttattgtgaaatttagaactaattaaggtgattagt |
6670585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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