View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_18 (Length: 418)
Name: NF20519_low_18
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 30472748 - 30472523
Alignment:
| Q |
16 |
ctgtcgaaaaaataaataaatagggttgttnnnnnnnnttataatagatttttt-aagatatgctgcattttgttaaaaatgtattaaaatttataattc |
114 |
Q |
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| T |
30472748 |
ctgtcgaaaaaataaataaatagggttgttaaaaaaaattataatagatttttttaaaatatgctgcattttgttaaaaatgtattaaaatttataattc |
30472649 |
T |
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| Q |
115 |
tacatttgtctataaatacaagaccctcactaaccttagagaagat---------tcaccttagtgaaatacaagactctctttttataaggaagtaagt |
205 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30472648 |
tacatttgtctataaatacaagactctcgttaaccttagagaagatattagaatctcaccttagtaaaatacaagactctctttttataaggaagtaagt |
30472549 |
T |
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| Q |
206 |
aaagtttgataaaaaagttgctccat |
231 |
Q |
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||||| |||||||||||||||||||| |
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| T |
30472548 |
aaagtctgataaaaaagttgctccat |
30472523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 299 - 400
Target Start/End: Complemental strand, 30472458 - 30472359
Alignment:
| Q |
299 |
gttcaattgtttcattatcatccatataaaaataggaaatgttaacttgtattttaaggcagaagttaattaataaaatatagagtacctgttaacttga |
398 |
Q |
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|||| ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30472458 |
gttctattgtttcattatcatctatataaacataggaaatgttaacttgtgctttaaggcagaagttaattaataaa--atagagtacctgttaacttga |
30472361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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