View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_19 (Length: 415)
Name: NF20519_low_19
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 140 - 399
Target Start/End: Complemental strand, 30759581 - 30759322
Alignment:
| Q |
140 |
ttttttatacataaagcttgtttcattaaacatcaaaataacaaagaagtcatcaaaattcagatggaatcttggaaatttgtttttgattcaatgatca |
239 |
Q |
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| T |
30759581 |
ttttttatacataaagcttgtttcattaaacatcaaaataacaaagaagttatcaaaattcagatggaatcttggaaatttgtttttgattcaatgatca |
30759482 |
T |
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| Q |
240 |
ttgaacaagttactgaggaggataaggataaaaaaggatctgaattcaaaaaagaccaaggtaatgaacatgatttgaagaaagtttgtgttaagagaaa |
339 |
Q |
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| T |
30759481 |
ttcaacaagttactgaggaggataaggataaaaaaggatctgaattcaaaaaagaccaaggtaatgaacatgatttgaagaaagtttgtgttaagagaaa |
30759382 |
T |
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| Q |
340 |
gaatggagatgtaggtgaagaaccacctccttttaataggaaggtaaataaccacctaac |
399 |
Q |
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| T |
30759381 |
gaatggagatgtaggtgaagaaccaccttcttttaataggaaggtaaataaccacctaac |
30759322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 140 - 399
Target Start/End: Complemental strand, 30749326 - 30749067
Alignment:
| Q |
140 |
ttttttatacataaagcttgtttcattaaacatcaaaataacaaagaagtcatcaaaattcagatggaatcttggaaatttgtttttgattcaatgatca |
239 |
Q |
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| T |
30749326 |
ttttttatacataattcttgtgagattaaacatcaaaacaacaaagaagttatcaaaattcagatggaatccaagaaatttgttttagattcaatgatca |
30749227 |
T |
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| Q |
240 |
ttgaacaagttactgaggaggataaggataaaaaaggatctgaattcaaaaaagaccaaggtaatgaacatgatttgaagaaagtttgtgttaagagaaa |
339 |
Q |
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| T |
30749226 |
ttgaacaagttactgatcaggataaggataagaaaggatctgaattcaaaaaagaccaaggtgatgcacaggatttgaagaaagtttgtgttaagagaaa |
30749127 |
T |
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| Q |
340 |
gaatggagatgtaggtgaagaaccacctccttttaataggaaggtaaataaccacctaac |
399 |
Q |
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| T |
30749126 |
gaatgaagatgtaggtgaagaaccaccttcttttattaggaaggtgattaacctcctaac |
30749067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 30759389 - 30759454
Alignment:
| Q |
82 |
taacaaaaacttacttaaaatcatgttcattatattggtcttctttgaattcagatccttttttat |
147 |
Q |
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| T |
30759389 |
taacacaaactttcttcaaatcatgttcattaccttggtcttttttgaattcagatccttttttat |
30759454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 37709153 - 37709107
Alignment:
| Q |
328 |
tgttaagagaaagaatggagatgtaggtgaagaaccacctcctttta |
374 |
Q |
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| T |
37709153 |
tgttaagagaaagaatgaagatgtaagtgaagaaccaccttctttta |
37709107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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