View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20519_low_2 (Length: 882)

Name: NF20519_low_2
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20519_low_2
NF20519_low_2
[»] scaffold0642 (2 HSPs)
scaffold0642 (409-878)||(3932-4401)
scaffold0642 (345-398)||(3810-3863)
[»] scaffold0345 (2 HSPs)
scaffold0345 (409-878)||(13844-14313)
scaffold0345 (345-398)||(13722-13775)
[»] scaffold0105 (2 HSPs)
scaffold0105 (409-878)||(24668-25137)
scaffold0105 (345-398)||(25206-25259)
[»] chr8 (11 HSPs)
chr8 (411-878)||(44495336-44495803)
chr8 (345-398)||(44495212-44495265)
chr8 (237-302)||(10536000-10536065)
chr8 (212-301)||(18203302-18203391)
chr8 (231-302)||(10536792-10536863)
chr8 (218-300)||(30905978-30906060)
chr8 (237-301)||(32539456-32539520)
chr8 (345-395)||(41434876-41434925)
chr8 (229-304)||(18202771-18202846)
chr8 (215-301)||(30905397-30905483)
chr8 (350-395)||(42934871-42934915)
[»] chr4 (30 HSPs)
chr4 (409-836)||(15707187-15707615)
chr4 (64-304)||(17931972-17932213)
chr4 (93-302)||(17931288-17931497)
chr4 (212-304)||(9268021-9268113)
chr4 (212-303)||(49028509-49028600)
chr4 (172-300)||(53892253-53892381)
chr4 (212-301)||(52677553-52677642)
chr4 (212-304)||(3990921-3991013)
chr4 (212-313)||(10468726-10468827)
chr4 (345-398)||(15707065-15707118)
chr4 (172-301)||(53898290-53898419)
chr4 (182-302)||(4437680-4437800)
chr4 (212-300)||(12585404-12585492)
chr4 (229-301)||(45667232-45667304)
chr4 (231-302)||(9450923-9450994)
chr4 (229-302)||(10286410-10286483)
chr4 (237-302)||(28451547-28451612)
chr4 (212-299)||(25225793-25225880)
chr4 (231-302)||(28450750-28450821)
chr4 (242-304)||(12315853-12315915)
chr4 (231-300)||(4439038-4439107)
chr4 (190-255)||(12316059-12316124)
chr4 (231-302)||(9449715-9449786)
chr4 (218-284)||(49028281-49028347)
chr4 (237-302)||(12585158-12585223)
chr4 (220-300)||(16067578-16067656)
chr4 (218-298)||(52677804-52677884)
chr4 (212-299)||(10202681-10202768)
chr4 (218-304)||(10468478-10468564)
chr4 (678-723)||(28336295-28336340)
[»] scaffold1526 (1 HSPs)
scaffold1526 (523-877)||(1001-1360)
[»] chr2 (17 HSPs)
chr2 (523-876)||(3378173-3378529)
chr2 (409-520)||(3377244-3377356)
chr2 (212-302)||(38695134-38695224)
chr2 (190-310)||(4410599-4410719)
chr2 (712-803)||(30355844-30355936)
chr2 (212-310)||(18166625-18166723)
chr2 (345-398)||(3377122-3377175)
chr2 (231-302)||(4734217-4734288)
chr2 (231-302)||(14159206-14159277)
chr2 (237-304)||(4733302-4733369)
chr2 (231-302)||(14160421-14160492)
chr2 (229-302)||(42963031-42963104)
chr2 (212-298)||(4409164-4409250)
chr2 (212-302)||(42962768-42962858)
chr2 (237-302)||(18171351-18171416)
chr2 (218-284)||(38694906-38694972)
chr2 (345-378)||(3081203-3081236)
[»] scaffold0016 (2 HSPs)
scaffold0016 (661-795)||(53719-53857)
scaffold0016 (579-642)||(53852-53915)
[»] chr1 (7 HSPs)
chr1 (189-304)||(9114817-9114932)
chr1 (237-311)||(14904602-14904676)
chr1 (231-304)||(14903804-14903877)
chr1 (231-302)||(17690936-17691007)
chr1 (237-302)||(9116068-9116132)
chr1 (232-302)||(37499438-37499508)
chr1 (230-300)||(17689738-17689807)
[»] chr5 (15 HSPs)
chr5 (212-302)||(23322344-23322434)
chr5 (182-302)||(34634068-34634188)
chr5 (212-302)||(42792948-42793038)
chr5 (231-302)||(9379930-9380001)
chr5 (231-301)||(9380718-9380788)
chr5 (218-304)||(43183228-43183314)
chr5 (218-302)||(23322098-23322182)
chr5 (212-283)||(1501077-1501148)
chr5 (212-302)||(5841123-5841213)
chr5 (691-803)||(17850502-17850613)
chr5 (229-299)||(5840880-5840950)
chr5 (237-303)||(20244522-20244588)
chr5 (241-302)||(15933602-15933663)
chr5 (784-876)||(36932925-36933017)
chr5 (705-741)||(36933042-36933078)
[»] chr3 (21 HSPs)
chr3 (212-302)||(27864799-27864889)
chr3 (212-302)||(24107151-24107241)
chr3 (231-302)||(31596752-31596823)
chr3 (219-304)||(38758860-38758945)
chr3 (218-302)||(3171489-3171573)
chr3 (214-302)||(27865046-27865134)
chr3 (238-302)||(46685537-46685601)
chr3 (232-302)||(16907930-16908000)
chr3 (241-314)||(18025868-18025941)
chr3 (214-302)||(19860491-19860579)
chr3 (212-302)||(46684098-46684188)
chr3 (229-302)||(38758608-38758681)
chr3 (220-302)||(24107405-24107487)
chr3 (253-304)||(11422377-11422428)
chr3 (229-279)||(14812450-14812500)
chr3 (219-284)||(21792235-21792300)
chr3 (212-299)||(54446261-54446349)
chr3 (231-278)||(18026116-18026163)
chr3 (212-279)||(19860736-19860802)
chr3 (212-282)||(21792362-21792433)
chr3 (212-302)||(3171735-3171822)
[»] scaffold0069 (1 HSPs)
scaffold0069 (212-300)||(19897-19985)
[»] chr7 (10 HSPs)
chr7 (341-398)||(16000047-16000104)
chr7 (212-302)||(4265222-4265312)
chr7 (229-303)||(8905639-8905713)
chr7 (241-299)||(8342673-8342731)
chr7 (231-300)||(8328197-8328266)
chr7 (341-398)||(14586231-14586288)
chr7 (237-302)||(18471777-18471842)
chr7 (232-283)||(25749396-25749447)
chr7 (231-301)||(8329046-8329115)
chr7 (232-302)||(18470139-18470209)
[»] chr6 (6 HSPs)
chr6 (212-302)||(3659198-3659287)
chr6 (212-302)||(5367661-5367750)
chr6 (230-302)||(8286788-8286860)
chr6 (229-302)||(3658952-3659025)
chr6 (250-302)||(8287449-8287501)
chr6 (345-378)||(27765318-27765351)
[»] scaffold0076 (1 HSPs)
scaffold0076 (345-398)||(1876-1929)
[»] scaffold0008 (2 HSPs)
scaffold0008 (212-299)||(266866-266953)
scaffold0008 (218-281)||(266642-266705)
[»] scaffold0006 (1 HSPs)
scaffold0006 (190-281)||(93652-93743)


Alignment Details
Target: scaffold0642 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 409 - 878
Target Start/End: Original strand, 3932 - 4401
Alignment:
Q  409 ccgttgttacgtcacgtttcatatactttcatcaatatcatatcctttcaattacctctttgaactacaaacaatttt-aaactaaccaatcaacatcca 507  Q
    |||||||||| ||||||| ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3932 ccgttgttacctcacgtt-catatacttccattaatatcatatcctttcgattacctctttgaactacaaacaattttcaaactaaccaatcaacatcca 4030  T
Q  508 tcgctaacactatatatctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4031 tcgctaacactatatatctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatc 4130  T
Q  608 cggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttcc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4131 cggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttcc 4230  T
Q  708 ctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatccttt 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4231 ctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgttgcaatccttt 4330  T
Q  808 caacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccgtaacacttacccctg 878  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  4331 caacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaacccttacccctg 4401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 3810 - 3863
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 398  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3810 atcctttactattaaaactagacttgatgagctgtcaccttagccctaatcact 3863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 409 - 878
Target Start/End: Original strand, 13844 - 14313
Alignment:
Q  409 ccgttgttacgtcacgtttcatatactttcatcaatatcatatcctttcaattacctctttgaactacaaacaatttt-aaactaaccaatcaacatcca 507  Q
    |||||||||| ||||||| ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13844 ccgttgttacctcacgtt-catatacttccattaatatcatatcctttcgattacctctttgaactacaaacaattttcaaactaaccaatcaacatcca 13942  T
Q  508 tcgctaacactatatatctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13943 tcgctaacactatatatctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatc 14042  T
Q  608 cggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttcc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14043 cggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttcc 14142  T
Q  708 ctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatccttt 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14143 ctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgttgcaatccttt 14242  T
Q  808 caacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccgtaacacttacccctg 878  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  14243 caacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaacccttacccctg 14313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 13722 - 13775
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 398  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13722 atcctttactattaaaactagacttgatgagctgtcaccttagccctaatcact 13775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 409 - 878
Target Start/End: Complemental strand, 25137 - 24668
Alignment:
Q  409 ccgttgttacgtcacgtttcatatactttcatcaatatcatatcctttcaattacctctttgaactacaaacaatttt-aaactaaccaatcaacatcca 507  Q
    |||||||||| ||||||| ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25137 ccgttgttacctcacgtt-catatacttccattaatatcatatcctttcgattacctctttgaactacaaacaattttcaaactaaccaatcaacatcca 25039  T
Q  508 tcgctaacactatatatctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25038 tcgctaacactatatatctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatc 24939  T
Q  608 cggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttcc 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24938 cggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttcc 24839  T
Q  708 ctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatccttt 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24838 ctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgttgcaatccttt 24739  T
Q  808 caacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccgtaacacttacccctg 878  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  24738 caacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaacccttacccctg 24668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 25259 - 25206
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 398  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  25259 atcctttactattaaaactagacttgatgagctgtcaccttagccctaatcact 25206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 411 - 878
Target Start/End: Original strand, 44495336 - 44495803
Alignment:
Q  411 gttgttacgtcacgtttcatatactttcatcaatatcatatcctttcaattacctctttgaactacaaacaatttt-aaactaaccaatcaacatccatc 509  Q
    |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  44495336 gttgttacctcacatttcatatacttccatcaatatcatatcctttcaattacctcttt-aactacaaacaattttcaaactaaccaatcaacatccatc 44495434  T
Q  510 gctaacactatatatctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccg 609  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44495435 gctaacactgtatatctcttcaaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccg 44495534  T
Q  610 gttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccct 709  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44495535 gttcttcttctctcacactccattcatacccatgaacaaacaatcagttaaactcatccatgaattcactccagatcggtgagtggcttcgttcttccct 44495634  T
Q  710 cctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttca 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44495635 cctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctattccggccaccctcctccgccgtcgtcgcaatcctttca 44495734  T
Q  810 acctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccgtaacacttacccctg 878  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  44495735 acctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccctaacccttacccctg 44495803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 44495212 - 44495265
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44495212 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 44495265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 10536065 - 10536000
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||    
T  10536065 ttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaagcc 10536000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 212 - 301
Target Start/End: Original strand, 18203302 - 18203391
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagc 301  Q
    ||||||||| ||| |  ||||||| |||||||||||||| |||||| | |||||||||||||||||||||||| || |||||||||||||    
T  18203302 taacttaagagactaaattgtaacgttaataacttatggaaccaaaatataaccaataaataacttaagggaccaaatcattaattaagc 18203391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 10536792 - 10536863
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| |||||||||||||||| |||| ||||||||| |||||| ||||||||| || ||||||||||||||    
T  10536792 gtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaagcc 10536863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 218 - 300
Target Start/End: Original strand, 30905978 - 30906060
Alignment:
Q  218 aagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaag 300  Q
    |||||||||  ||||||| ||||||||||||||||| ||| ||||||||| |||||||||||| ||| |  ||||||||||||    
T  30905978 aagggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagagaccacatcattaattaag 30906060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 32539456 - 32539520
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagc 301  Q
    ||||||||||||| ||  ||| ||||||||| |||||||||||||||| || |||||||||||||    
T  32539456 ttaataacttatgagattaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagc 32539520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 41434876 - 41434925
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatc 395  Q
    ||||||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  41434876 atcctttactattaacgctagacttgatgagctgtca-cttaaccctaatc 41434925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 18202846 - 18202771
Alignment:
Q  229 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    ||||||| ||||||||||||| ||| ||| ||||| ||| |||||||||||  |||||  | ||||||||||||||    
T  18202846 ttgtaacattaataacttatgagacgaaaatgtaatcaacaaataacttaatagactacattattaattaagccaa 18202771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 301
Target Start/End: Complemental strand, 30905483 - 30905397
Alignment:
Q  215 cttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagc 301  Q
    ||||||||||||  ||||||| ||||||| |||| | |  ||| | ||||||| |||||| ||||||||| || |||||||||||||    
T  30905483 cttaagggaccaaattgtaacgttaataagttatagaattaaaatataaccaacaaataatttaagggaccaaatcattaattaagc 30905397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 42934915 - 42934871
Alignment:
Q  350 ttactattaaagctagacttgatgagctgtcaccttagccctaatc 395  Q
    |||||||||| ||||||||||||||||||||| |||| ||||||||    
T  42934915 ttactattaacgctagacttgatgagctgtca-cttaaccctaatc 42934871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 409 - 836
Target Start/End: Original strand, 15707187 - 15707615
Alignment:
Q  409 ccgttgttacgtcacgtttcatatactttcatcaatatcatatcctttcaattacctctttgaactacaaacaatttt-aaactaaccaatcaacatcca 507  Q
    |||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15707187 ccgttgttacctcaggtttcatatacttccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatcca 15707286  T
Q  508 tcgctaacactatatatctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatc 607  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707287 tcgctaatactatatatctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatc 15707386  T
Q  608 cggttcttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttcc 707  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707387 cggtccttcttctctcacactctattcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttcc 15707486  T
Q  708 ctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatccttt 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707487 ctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatccttt 15707586  T
Q  808 caacctccttagtacgagtctttccatgg 836  Q
    ||||||| |||||||||||||||||||||    
T  15707587 caacctctttagtacgagtctttccatgg 15707615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 64 - 304
Target Start/End: Original strand, 17931972 - 17932213
Alignment:
Q  64 taatttcatctccaatttatttacattaaacttatgccacgtcctcttcctttatttggccgttttccatccacacatgcgacacgttggatgatttaac 163  Q
    |||||||||||||||||||| | | |||||||||||||||||| || ||  | ||||||||||||| || ||| ||||  | ||||| ||||||||||||    
T  17931972 taatttcatctccaatttatgtcctttaaacttatgccacgtcatcctcactcatttggccgtttttcaccca-acatatgccacgtaggatgatttaac 17932070  T
Q  164 gnnnnnnn--caaaaacttaacggttgggatttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgt 261  Q
    |         |||||||||||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17932071 gtttttttttcaaaaacttaacggttaggatttaattggctgataaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgt 17932170  T
Q  262 aaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  17932171 aaccaataaataacttaagggaccaattcattaattaagccaa 17932213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 93 - 302
Target Start/End: Complemental strand, 17931497 - 17931288
Alignment:
Q  93 acttatgccacgtcctcttcctttatttggccgttttccatccacacatgcgacacgttggatgatttaacgnnnnnnncaaaaacttaacggttgggat 192  Q
    |||||||||||||| || ||  ||||||| | |||||||| |||  |||  | ||||| | |||||||||||       |||||||||||||||||||||    
T  17931497 acttatgccacgtcatcgtcaattatttgcctgttttccacccaatcatatgccacgtagaatgatttaacgtttttttcaaaaacttaacggttgggat 17931398  T
Q  193 ttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcat 292  Q
    ||||||||||  || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17931397 ttaattggctgacggagtgtaacttaagggaccattttgtaacgttaataacttatgggaccaaattgtaaccaataaataacttaagggaccaattcat 17931298  T
Q  293 taattaagcc 302  Q
    ||||||||||    
T  17931297 taattaagcc 17931288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 212 - 304
Target Start/End: Complemental strand, 9268113 - 9268021
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||    
T  9268113 taacttaagggaccaaattgtaactttaataacttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaagccaa 9268021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 49028509 - 49028600
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcca 303  Q
    |||||||||||||||  ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||    
T  49028509 taacttaagggaccaaattgtaacattaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaagcca 49028600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 172 - 300
Target Start/End: Complemental strand, 53892381 - 53892253
Alignment:
Q  172 caaaaacttaacggttgggatttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaa 271  Q
    |||||| || |||||||||||||||||||||  || || |||||||||  ||||||||| | || |||||||||||||||||| |||||||||| |||||    
T  53892381 caaaaaattgacggttgggatttaattggctgacggagagtaacttaatagaccattttattacgttaataacttatgggacccaattgtaacctataaa 53892282  T
Q  272 taacttaagggactaattcattaattaag 300  Q
    |||||||||  || || ||||||||||||    
T  53892281 taacttaagaaaccaaatcattaattaag 53892253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 212 - 301
Target Start/End: Complemental strand, 52677642 - 52677553
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagc 301  Q
    |||||||| ||||||  ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || | |||||||||||    
T  52677642 taacttaatggaccaaattgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaagggaccaaataattaattaagc 52677553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 212 - 304
Target Start/End: Original strand, 3990921 - 3991013
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||| || ||| ||||||||||||    
T  3990921 taacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaattaacttaagggaccaaatcaataattaagccaa 3991013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 212 - 313
Target Start/End: Original strand, 10468726 - 10468827
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaacattttt 311  Q
    |||||||| ||||||  ||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||| || | ||||||||||||| |||| ||    
T  10468726 taacttaacggaccaaattgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatgattaattaagccatcattatt 10468825  T
Q  312 ta 313  Q
    ||    
T  10468826 ta 10468827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 15707065 - 15707118
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15707065 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 15707118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 172 - 301
Target Start/End: Original strand, 53898290 - 53898419
Alignment:
Q  172 caaaaacttaacggttgggatttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaa 271  Q
    |||||| || |||||||||||||||||||||  | ||| |||||||||||||||||||| | || ||||||  ||||| ||||||||| ||||  |||||    
T  53898290 caaaaaattgacggttgggatttaattggctgacaaagagtaacttaagggaccattttattacattaatagtttatgagaccaaattataacttataaa 53898389  T
Q  272 taacttaagggactaattcattaattaagc 301  Q
    ||||||| | ||| || | |||||||||||    
T  53898390 taacttacgagaccaaattattaattaagc 53898419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 4437800 - 4437680
Alignment:
Q  182 acggttgggatttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagg 281  Q
    ||||| |||||||| ||||||| |  ||| |||||||| ||||||    ||||| ||||||||||||||||||||||||||||||| |||||| |||| |    
T  4437800 acggtcgggatttatttggctaacagagtctaacttaaaggaccaaaacgtaacgttaataacttatgggaccaaattgtaaccaacaaataatttaatg 4437701  T
Q  282 gactaattcattaattaagcc 302  Q
    ||| ||  |||||||||||||    
T  4437700 gaccaaaccattaattaagcc 4437680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 12585404 - 12585492
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaag 300  Q
    |||||||||||||||  ||||||  ||||||||||||| || |||| ||||||||| |||||||||||||||| || ||||||||||||    
T  12585404 taacttaagggaccaaattgtaatgttaataacttatgagatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 12585492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 229 - 301
Target Start/End: Complemental strand, 45667304 - 45667232
Alignment:
Q  229 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagc 301  Q
    ||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||| || |||||||||||||    
T  45667304 ttgtaacgttaataacttatgagaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagc 45667232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 9450923 - 9450994
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| |||||||||||||||||||||  |||||||| |||||||||||||||| || ||||||||||||||    
T  9450923 gtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaagcc 9450994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 10286483 - 10286410
Alignment:
Q  229 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||| ||||||||| ||||||| ||| ||||||||| |||||||||||||||| || ||||||||||||||    
T  10286483 ttgtaacgttaataactaatgggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 10286410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 28451547 - 28451612
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||| |||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||    
T  28451547 ttaatatcttatgagaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaagcc 28451612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 25225880 - 25225793
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaa 299  Q
    ||||||||| ||| |  ||||||| ||||||||||||| ||||||| | ||||||| |||||||||||||||| || |||||||||||    
T  25225880 taacttaagcgacaaaattgtaacgttaataacttatgagaccaaaatataaccaacaaataacttaagggaccaaatcattaattaa 25225793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 28450821 - 28450750
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| |||||||||||||||| |||| ||||||||| |||||| ||||||||| || ||||||||||||||    
T  28450821 gtaacattaataacttatgggatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaagcc 28450750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 242 - 304
Target Start/End: Complemental strand, 12315915 - 12315853
Alignment:
Q  242 aacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    |||||||||||||||||||||||| | ||||||||||| |||| || ||||||||||||||||    
T  12315915 aacttatgggaccaaattgtaacctacaaataacttaaaggaccaaatcattaattaagccaa 12315853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 4439038 - 4439107
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaag 300  Q
    ||||| ||||||||||||| ||||||||||||||||| ||||||||| |||||| |  ||||||||||||    
T  4439038 gtaacgttaataacttatgagaccaaattgtaaccaacaaataactttagggaccacgtcattaattaag 4439107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 12316124 - 12316059
Alignment:
Q  190 gatttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggacca 255  Q
    |||||||||||||| || || |||||||| ||||||||||||| || |||||||||||||||||||    
T  12316124 gatttaattggctaacggagagtaacttatgggaccattttgttacattaataacttatgggacca 12316059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 9449786 - 9449715
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| ||||||||||||| |||||||  |||||||| ||||||||||| |||| || ||||||||||||||    
T  9449786 gtaacgttaataacttatgagaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaagcc 9449715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 49028347 - 49028281
Alignment:
Q  218 aagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggac 284  Q
    |||||||||  | ||||| ||||||| ||||||||| ||| ||||||||| ||||||||||||||||    
T  49028347 aagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggac 49028281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 302
Target Start/End: Complemental strand, 12585223 - 12585158
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||||||||| ||| ||| ||||| ||| |||||||||||||||| |  ||||||||||||||    
T  12585223 ttaataacttatgagactaaaatgtaatcaacaaataacttaagggaccacgtcattaattaagcc 12585158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 16067578 - 16067656
Alignment:
Q  220 gggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaag 300  Q
    |||||||  ||||||| ||||||||||||| ||| ||| ||||||||| |||||| |||| ||||||  ||||||||||||    
T  16067578 gggaccaaattgtaacgttaataacttatgagactaaaatgtaaccaacaaataatttaaaggacta--tcattaattaag 16067656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 52677804 - 52677884
Alignment:
Q  218 aagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaatta 298  Q
    |||||||||  || |||| ||||||||||||| ||| ||| ||||||||| ||||||| |||||||| |  ||||||||||    
T  52677804 aagggaccaaattataacattaataacttatgagactaaaatgtaaccaacaaataacctaagggaccacatcattaatta 52677884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 299
Target Start/End: Complemental strand, 10202768 - 10202681
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaa 299  Q
    |||||||||| | ||  ||||||| ||||||| ||||||||||||| ||||||||  |||||| |||| |||  || |||||||||||    
T  10202768 taacttaaggcatcaaattgtaacgttaataatttatgggaccaaaatgtaaccagcaaataatttaaaggatcaaatcattaattaa 10202681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 10468564 - 10468478
Alignment:
Q  218 aagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    |||||||||  ||||||| |||| ||||||   ||| ||| ||||||||| |||||||||||||||| |  ||| ||||||||||||    
T  10468564 aagggaccaaattgtaacgttaaaaacttagatgactaaaatgtaaccaacaaataacttaagggaccacatcagtaattaagccaa 10468478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 678 - 723
Target Start/End: Complemental strand, 28336340 - 28336295
Alignment:
Q  678 ctccagatcggtgagtggcttcgttcttccctcctaacccccaact 723  Q
    |||||||| ||| ||||| ||||||| |||||||||||||||||||    
T  28336340 ctccagattggttagtggtttcgttcatccctcctaacccccaact 28336295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1526 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: scaffold1526
Description:

Target: scaffold1526; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 523 - 877
Target Start/End: Complemental strand, 1360 - 1001
Alignment:
Q  523 atctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttcttctct 622  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1360 atctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctct 1261  T
Q  623 cacactctattc-----atacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaaccc 717  Q
    ||||||||||||     |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1260 cacactctattctattcatacacatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaaccc 1161  T
Q  718 ccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctcctt 817  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1160 ccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctcctt 1061  T
Q  818 agtacgagtctttccatggcatttccaatttcccacctcttcaccgtaacacttacccct 877  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  1060 agtacgagtctttccatggcatttccaatttcccacctcttcaccctaacccttacccct 1001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 523 - 876
Target Start/End: Original strand, 3378173 - 3378529
Alignment:
Q  523 atctcttcgaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggttcttcttctct 622  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3378173 atctcttggaatgtctatccatcttaaaaaacagtgttgcacactgctccatattccttactttctctctaacatcattccaatccggtccttcttctct 3378272  T
Q  623 cacactcta-----ttcatacccatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaaccc 717  Q
    |||||||||     ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378273 cacactctattctattcatacacatgaacaaacaatcagttaaacccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaaccc 3378372  T
Q  718 ccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctcctt 817  Q
    |||||||||||||||||||||||||||||||||||   |    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3378373 ccaacttccaccaaacaaacaatcatgaccgaacaatcc--tttcaaatcctactccggccaccctcctccgccgtcgtcgcaatcctttcaacctcctt 3378470  T
Q  818 agtacgagtctttccatggcatttccaatttcccacctcttcaccgtaacacttacccc 876  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  3378471 agtacgagtctttccatggcatttccaatttcccacctcttcaccctaacccttacccc 3378529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 409 - 520
Target Start/End: Original strand, 3377244 - 3377356
Alignment:
Q  409 ccgttgttacgtcacgtttcatatactttcatcaatatcatatcctttcaattacctctttgaactacaaacaatttt-aaactaaccaatcaacatcca 507  Q
    |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3377244 ccgttgttacctcacgtttcatataattccatcaatatcatatcctttcaattacctctttgaactacaaacaattttcaaactaaccaatcaacatcca 3377343  T
Q  508 tcgctaacactat 520  Q
    |||||||||||||    
T  3377344 tcgctaacactat 3377356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 38695134 - 38695224
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||  ||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||    
T  38695134 taacttaagggaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaataaataacttaagggaccaaatcattaattaagcc 38695224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 190 - 310
Target Start/End: Original strand, 4410599 - 4410719
Alignment:
Q  190 gatttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaatt 289  Q
    |||||| ||||||| |  ||| |||||||||||||||   |||| | ||||||||||| ||||||||||||||||||| |||||||||||||||| || |    
T  4410599 gatttatttggctaacagagtctaacttaagggaccaaaatgtagcgttaataacttacgggaccaaattgtaaccaacaaataacttaagggaccaaat 4410698  T
Q  290 cattaattaagccaacatttt 310  Q
    ||||||||||||| |||||||    
T  4410699 cattaattaagcctacatttt 4410719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 712 - 803
Target Start/End: Original strand, 30355844 - 30355936
Alignment:
Q  712 taacccccaacttccaccaa-acaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgccgtcgtcgcaatc 803  Q
    |||||||||||| ||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||| |||  ||||||||||    
T  30355844 taacccccaactcccaccaacacaaacaatcatgaccgaacacgacaaacccaaatcctcctccggccaccctcctcagccaccgtcgcaatc 30355936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 18166723 - 18166625
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaacatttt 310  Q
    |||||||||||||||  ||||||| ||||||||||||| || |||| ||||||||| |||||| ||||||||| || ||||||||||||||||| ||||    
T  18166723 taacttaagggaccaaattgtaacgttaataacttatgagatcaaaatgtaaccaacaaataatttaagggaccaaatcattaattaagccaacttttt 18166625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 345 - 398
Target Start/End: Original strand, 3377122 - 3377175
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 398  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3377122 atcctttactattaaagctagacttgatgaactgtcaccttagccctaatcact 3377175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 4734217 - 4734288
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| |||||||||||| ||| |||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  4734217 gtaacgttaataacttataggatcaaaatgtaaccaacaaataacttaagggaccaattcattaattaagcc 4734288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 14159277 - 14159206
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| |||||||||||||||||||||  |||||||| |||||||||||||||| || ||||||||||||||    
T  14159277 gtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaagcc 14159206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 4733369 - 4733302
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||||||  || ||||||||||||||||    
T  4733369 ttaataacttatgggaccaaaatgtaaccaacaaataatttaagggatcaaatcattaattaagccaa 4733302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 14160421 - 14160492
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| |||||||||||||||||||||  |||||||| ||||||||||| |||| || ||||||||||||||    
T  14160421 gtaacgttaataacttatgggaccaaaacgtaaccaacaaataacttaatggaccaaatcattaattaagcc 14160492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Original strand, 42963031 - 42963104
Alignment:
Q  229 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||| ||||||||||||| ||| ||| ||||||||| |||||||||||||||| |  ||||||||||||||    
T  42963031 ttgtaacgttaataacttatgagactaaaatgtaaccaacaaataacttaagggaccacatcattaattaagcc 42963104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 4409250 - 4409164
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaatta 298  Q
    |||||||||||||||    ||||| ||||||||||||| |||||||||||||| || |||||| ||||| ||| || ||||||||||    
T  4409250 taacttaagggaccaaaacgtaacgttaataacttatgagaccaaattgtaactaacaaataatttaagagaccaaatcattaatta 4409164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 42962858 - 42962768
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||  ||||||| ||| | ||||||| || |||| || |||||| ||||||| |||||||| || ||||||||||||||    
T  42962858 taacttaagggaccaaattgtaacgttagtcacttatgagatcaaaatgcaaccaacaaataacctaagggaccaaatcattaattaagcc 42962768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 18171351 - 18171416
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||||||||||||| ||| ||||||||| |||||| ||||||||| |  ||||||||||||||    
T  18171351 ttaataacttatgggactaaaatgtaaccaacaaataatttaagggaccatatcattaattaagcc 18171416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 38694972 - 38694906
Alignment:
Q  218 aagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggac 284  Q
    |||||||||  | ||||| ||||||| ||||||||| ||| ||||||||| ||||||||||||||||    
T  38694972 aagggaccaaatggtaacgttaataatttatgggactaaaatgtaaccaacaaataacttaagggac 38694906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 3081203 - 3081236
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctg 378  Q
    |||||||||||||||||| |||||||||||||||    
T  3081203 atcctttactattaaagccagacttgatgagctg 3081236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 118; Significance: 1e-59; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 661 - 795
Target Start/End: Complemental strand, 53857 - 53719
Alignment:
Q  661 acccatccatgaattcactccagatcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaa----acaatcatgaccgaacacggc 756  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  53857 acccatccatgaattcactccagagcggtgagtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaaacaatcatgaccgaacacggc 53758  T
Q  757 aaactcaaatcctactccggccaccctcctccgccgtcg 795  Q
    |||||||||||||||||||||||||||||||||||||||    
T  53757 aaactcaaatcctactccggccaccctcctccgccgtcg 53719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 579 - 642
Target Start/End: Complemental strand, 53915 - 53852
Alignment:
Q  579 cttactttctctctaacatcattccaatccggttcttcttctctcacactctattcatacccat 642  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  53915 cttactttctctctaacatcattccaatccggtccttcttctctcacactctattcatacccat 53852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 189 - 304
Target Start/End: Complemental strand, 9114932 - 9114817
Alignment:
Q  189 ggatttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaat 288  Q
    ||||||| ||||||| |||| | ||| |||||||||||    ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| ||     
T  9114932 ggatttatttggctaacgaattataaattaagggaccaaaacgtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggacaaaa 9114833  T
Q  289 tcattaattaagccaa 304  Q
    ||||||||||||||||    
T  9114832 tcattaattaagccaa 9114817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 14904602 - 14904676
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaacattttt 311  Q
    |||||| |||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| | ||||||    
T  14904602 ttaatatcttatgggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaagcctatattttt 14904676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 231 - 304
Target Start/End: Complemental strand, 14903877 - 14903804
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    ||||| |||||||||||||||| |||| ||||||||| |||||||||||||||| || ||||||||||||||||    
T  14903877 gtaacgttaataacttatgggatcaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagccaa 14903804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 17690936 - 17691007
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| ||||||||||||||||||| |   ||||||| |||||||||||||||| || ||||||||||||||    
T  17690936 gtaacgttaataacttatgggaccagaacataaccaacaaataacttaagggaccaaatcattaattaagcc 17691007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 9116068 - 9116132
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||| ||| |||| |||||||||||||    
T  9116068 ttaataacttatgagaccaaaatgtaaccaacaaataacttaaagga-taatacattaattaagcc 9116132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 37499438 - 37499508
Alignment:
Q  232 taaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||| ||||||||||||| ||||||| ||||||||| |||||||||||| |   || ||||||||||||||    
T  37499438 taacattaataacttatgagaccaaaatgtaaccaacaaataacttaagaggtcaaatcattaattaagcc 37499508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 17689807 - 17689738
Alignment:
Q  230 tgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaag 300  Q
    |||||| || |||||||||| |||||||  |||| ||| |||||||||||||||| || ||||||||||||    
T  17689807 tgtaacgtttataacttatgagaccaaac-gtaatcaacaaataacttaagggaccaaatcattaattaag 17689738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 2e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 23322344 - 23322434
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||  ||||||| |||||||||||||| |||||| ||||||||| |||||||||||||||| || ||||||||||||||    
T  23322344 taacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 23322434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 34634188 - 34634068
Alignment:
Q  182 acggttgggatttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagg 281  Q
    ||||| |||||||| ||| ||| |  ||| |||||||| ||||||   |||||| ||||||||||||||||||||||||||||||| ||||||||||| |    
T  34634188 acggtagggatttatttgactaacagagtctaacttaatggaccaaaatgtaacgttaataacttatgggaccaaattgtaaccaacaaataacttaaag 34634089  T
Q  282 gactaattcattaattaagcc 302  Q
    ||| |  ||||||||||||||    
T  34634088 gaccacatcattaattaagcc 34634068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 42793038 - 42792948
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||  ||||||| ||||||| ||||||||||||| || |||||| |||||||||||| ||| || ||||||||||||||    
T  42793038 taacttaagggaccaaattgtaacattaataatttatgggaccaaaatgaaaccaacaaataacttaagcgaccaaatcattaattaagcc 42792948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 9380001 - 9379930
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| |||||||||| ||| |||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  9380001 gtaacgttaataacttgtggaaccaaaatgtaaccaacaaataacttaagggaccaattcattaattaagcc 9379930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 9380718 - 9380788
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagc 301  Q
    ||||| |||||||||||||||| |||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  9380718 gtaacattaataacttatgggatcaaaatgtaaccaacaaataacttaagggatcaattcattaattaagc 9380788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 218 - 304
Target Start/End: Complemental strand, 43183314 - 43183228
Alignment:
Q  218 aagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    |||||||||  ||||||  ||||||| ||||||||||||| ||||||||| |||||||||||||||| || | ||||||||||||||    
T  43183314 aagggaccaaattgtaatgttaataatttatgggaccaaaatgtaaccaacaaataacttaagggaccaaattattaattaagccaa 43183228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 218 - 302
Target Start/End: Complemental strand, 23322182 - 23322098
Alignment:
Q  218 aagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||  ||||||| ||||||||||||||||| ||| ||||||||| |||||||||||  |||||  ||||||||||||||    
T  23322182 aagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaatagactacatcattaattaagcc 23322098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 1501077 - 1501148
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaaggga 283  Q
    |||||||||||||||   |||||| ||||||| ||||||||||||| || ||||||||||||||||||||||    
T  1501077 taacttaagggaccaaaatgtaacgttaataatttatgggaccaaaatgaaaccaataaataacttaaggga 1501148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 5841123 - 5841213
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||| | ||||  ||||||| ||||||| ||||||||||||| ||||||||| |||||| ||||| ||| || ||||||||||||||    
T  5841123 taacttaaagaaccaaattgtaacgttaataatttatgggaccaaaatgtaaccaacaaataagttaagagaccaaatcattaattaagcc 5841213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 691 - 803
Target Start/End: Complemental strand, 17850613 - 17850502
Alignment:
Q  691 agtggcttcgttcttccctcctaacccccaacttccaccaaacaaacaatcatgaccgaacacggcaaactcaaatcctactccggccaccctcctccgc 790  Q
    |||||||| |||| |||||| ||||||| | ||| ||| |||||||| |||||| ||||||||  |||||||||||||| |||||| ||||| ||| |||    
T  17850613 agtggctttgttcatccctcataacccc-agcttgcactaaacaaaccatcatgcccgaacacaacaaactcaaatcctcctccggacacccaccttcgc 17850515  T
Q  791 cgtcgtcgcaatc 803  Q
    ||  |||||||||    
T  17850514 cgatgtcgcaatc 17850502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 5840950 - 5840880
Alignment:
Q  229 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaa 299  Q
    ||||||| |||||||||||||| || ||| | ||||||| |||||||||||||||| |  |||||||||||    
T  5840950 ttgtaacgttaataacttatggcactaaaatataaccaacaaataacttaagggaccacatcattaattaa 5840880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 20244522 - 20244588
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcca 303  Q
    ||||||| ||||||||||||| ||||||||| |||||| |||||  || || |||||||||||||||    
T  20244522 ttaataatttatgggaccaaaatgtaaccaacaaataatttaagtaacaaaatcattaattaagcca 20244588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 15933602 - 15933663
Alignment:
Q  241 taacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||| ||||| ||| ||||||||| |||||||||||||||| || |||| |||||||||    
T  15933602 taacttaagggactaaaatgtaaccaacaaataacttaagggaccaaatcatgaattaagcc 15933663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 784 - 876
Target Start/End: Complemental strand, 36933017 - 36932925
Alignment:
Q  784 cctccgccgtcgtcgcaatcctttcaacctccttagtacgagtctttccatggcatttccaatttcccacctcttcaccgtaacacttacccc 876  Q
    |||||||||||||  |||||| ||  |||||||  |||||| |||||||||||||||| |||| ||||||| | | ||| |||| ||||||||    
T  36933017 cctccgccgtcgttccaatccctttcacctcctctgtacgactctttccatggcattttcaatctcccaccaccttaccctaacccttacccc 36932925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 705 - 741
Target Start/End: Complemental strand, 36933078 - 36933042
Alignment:
Q  705 tccctcctaacccccaacttccaccaaacaaacaatc 741  Q
    ||||||||||||||||||||||||| |||||||||||    
T  36933078 tccctcctaacccccaacttccaccgaacaaacaatc 36933042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 2e-24; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 27864889 - 27864799
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||| ||||||||| |||||||||| ||||| || ||||||||||||||    
T  27864889 taacttaagggaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttacgggaccaaatcattaattaagcc 27864799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 24107241 - 24107151
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||||| |||||  ||||||| ||||||||||||||||||||| ||||||||| |||||||| ||||||| || ||||||||||||||    
T  24107241 taacttaagtgaccaaattgtaacgttaataacttatgggaccaaaatgtaaccaacaaataactcaagggaccaaatcattaattaagcc 24107151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 31596752 - 31596823
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||    
T  31596752 gtaacgttaataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 31596823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 38758860 - 38758945
Alignment:
Q  219 agggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    ||||||||  || |||| || |||||||||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||||    
T  38758860 agggaccaaattataacgttgataacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagccaa 38758945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 218 - 302
Target Start/End: Complemental strand, 3171573 - 3171489
Alignment:
Q  218 aagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||  ||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||| |  ||||||||||||||    
T  3171573 aagggaccaaattgtaacattaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaagcc 3171489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 214 - 302
Target Start/End: Original strand, 27865046 - 27865134
Alignment:
Q  214 acttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||| ||||||  ||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||| |  ||||||||||||||    
T  27865046 acttaaaggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggaccacatcattaattaagcc 27865134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 46685537 - 46685601
Alignment:
Q  238 taataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||    
T  46685537 taataacttatgggaccaaaatgtaaccaataaataatttaagggaccaaatcattaattaagcc 46685601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 16908000 - 16907930
Alignment:
Q  232 taaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||| |||||||||||||||||||||  |||||||| |||||||||||||||| || ||||||||||||||    
T  16908000 taacgttaataacttatgggaccaaaacgtaaccaacaaataacttaagggaccaaatcattaattaagcc 16907930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 18025941 - 18025868
Alignment:
Q  241 taacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagccaacattttttat 314  Q
    ||||||||||||||||| ||||||||| |||||||||||||||| ||  ||||||||||||||||  |||||||    
T  18025941 taacttatgggaccaaaatgtaaccaacaaataacttaagggaccaaagcattaattaagccaaccctttttat 18025868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 19860579 - 19860491
Alignment:
Q  214 acttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||| ||||||  ||||||| ||||||||||||||||| ||| |||||||||||||||||||||  ||| |  ||||||||||||||    
T  19860579 acttaaaggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaataaataacttaatagaccacatcattaattaagcc 19860491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 212 - 302
Target Start/End: Complemental strand, 46684188 - 46684098
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||    ||||  |||||||||||||||| |||| ||||||||| |||||||||||| ||| || ||||||||||||||    
T  46684188 taacttaagggaccaaaacgtaatgttaataacttatgggatcaaaatgtaaccaacaaataacttaagcgaccaaatcattaattaagcc 46684098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 38758681 - 38758608
Alignment:
Q  229 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||| |  ||| ||||||||||    
T  38758681 ttgtaacgttaataacttatgggactaaaatgtaaccaacaaataacttaagggacaacatcactaattaagcc 38758608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 220 - 302
Target Start/End: Original strand, 24107405 - 24107487
Alignment:
Q  220 gggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||  ||||||| ||||||||||||||||| ||| ||||||||| || |||||||| |||| |  ||||||||||||||    
T  24107405 gggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaacaattaacttaatggaccacatcattaattaagcc 24107487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 11422428 - 11422377
Alignment:
Q  253 ccaaattgtaaccaataaataacttaagggactaattcattaattaagccaa 304  Q
    ||||| ||||||||| |||||||||||||||| || ||||||||||||||||    
T  11422428 ccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagccaa 11422377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 14812500 - 14812450
Alignment:
Q  229 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaa 279  Q
    ||||||| ||||||||||||||||||||| |||||| || |||||||||||    
T  14812500 ttgtaacgttaataacttatgggaccaaaatgtaactaaaaaataacttaa 14812450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Complemental strand, 21792300 - 21792235
Alignment:
Q  219 agggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggac 284  Q
    ||||||||  ||||||| ||||||||||||||||| ||| |||||||||  ||||| |||||||||    
T  21792300 agggaccaaattgtaacgttaataacttatgggactaaaatgtaaccaaccaataaattaagggac 21792235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 54446261 - 54446349
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaat-tgtaaccaataaataacttaagggactaattcattaattaa 299  Q
    ||||||||  |||||  ||||||  |||||||||||| ||||||||  |||||| || |||||||||||||||| || |||||||||||    
T  54446261 taacttaaaagaccaaattgtaatgttaataacttataggaccaaaaatgtaactaacaaataacttaagggaccaaatcattaattaa 54446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 278
Target Start/End: Original strand, 18026116 - 18026163
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataactta 278  Q
    ||||| ||||||||||||||||| ||| ||||||||| ||||||||||    
T  18026116 gtaacgttaataacttatgggactaaaatgtaaccaacaaataactta 18026163  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 19860736 - 19860802
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaa 279  Q
    |||||||| ||||||  ||||||  |||||||||| || ||||||| |||||||||||||||||||||    
T  19860736 taacttaaaggaccaaattgtaatgttaataactt-tgagaccaaaatgtaaccaataaataacttaa 19860802  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 282
Target Start/End: Original strand, 21792362 - 21792433
Alignment:
Q  212 taacttaagg-gaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaaggg 282  Q
    |||||||||| |||||  ||||||| |||||||||||  |||||||| ||||| ||| ||||||||||||||    
T  21792362 taacttaaggagaccaaattgtaacgttaataacttagaggaccaaaatgtaaacaacaaataacttaaggg 21792433  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 3171735 - 3171822
Alignment:
Q  212 taacttaagggaccat-tttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||  |||||||| |||||||    |||||  ||| ||||||| | |||||||||||||||| || ||||||||||||||    
T  3171735 taacttaagggaccaaatttgtaacattaataa----tgggatgaaaatgtaaccgacaaataacttaagggaccaaatcattaattaagcc 3171822  T

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Target: scaffold0069 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 212 - 300
Target Start/End: Complemental strand, 19985 - 19897
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaag 300  Q
    |||||||||||||||  ||||||| ||||||||||||| ||||||| ||||||||| |||||||||||||||| || ||||||||||||    
T  19985 taacttaagggaccaaattgtaacgttaataacttatgcgaccaaaatgtaaccaacaaataacttaagggaccaaatcattaattaag 19897  T

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Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 16000047 - 16000104
Alignment:
Q  341 atacatcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 398  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  16000047 atacatcctttactattaatgctagacttgatgagctgtcaccttagccctaatcact 16000104  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 4265222 - 4265312
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||| ||||||  ||||||| |||||||||||||||| |||| ||||||| | || ||||||||||||| || ||||||||||||||    
T  4265222 taacttaatggaccaaattgtaacgttaataacttatgggatcaaaatgtaaccgacaactaacttaagggaccaaatcattaattaagcc 4265312  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 8905713 - 8905639
Alignment:
Q  229 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcca 303  Q
    ||||||| ||||||||||||| ||||||| ||||||||| |||||||||||| ||| || ||||| |||||||||    
T  8905713 ttgtaacattaataacttatgagaccaaaatgtaaccaacaaataacttaagagaccaaatcattgattaagcca 8905639  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 8342673 - 8342731
Alignment:
Q  241 taacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaa 299  Q
    ||||||||| ||||||| ||||||||| ||||||||||| |||| ||||||||||||||    
T  8342673 taacttatgagaccaaagtgtaaccaaaaaataacttaatggaccaattcattaattaa 8342731  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 8328266 - 8328197
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaag 300  Q
    ||||| |||||||||| || ||||||| | |||| |||||||||||||||||||  ||||||||||||||    
T  8328266 gtaacgttaataacttgtgagaccaaaatctaactaataaataacttaagggaccgattcattaattaag 8328197  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 341 - 398
Target Start/End: Original strand, 14586231 - 14586288
Alignment:
Q  341 atacatcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 398  Q
    ||||||||||||||||||| |||||||||||||   |||||||||||||||| |||||    
T  14586231 atacatcctttactattaacgctagacttgatgcattgtcaccttagccctagtcact 14586288  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 237 - 302
Target Start/End: Original strand, 18471777 - 18471842
Alignment:
Q  237 ttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||||||||| ||||||| ||||||||| | |||||||||||||| || ||||||| ||||||    
T  18471777 ttaataacttatgagaccaaaatgtaaccaacagataacttaagggaccaaatcattaactaagcc 18471842  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 232 - 283
Target Start/End: Original strand, 25749396 - 25749447
Alignment:
Q  232 taaccttaataacttatgggaccaaattgtaaccaataaataacttaaggga 283  Q
    |||| ||||||||||||| ||| ||||||||||||| |||||||||||||||    
T  25749396 taacgttaataacttatgagactaaattgtaaccaacaaataacttaaggga 25749447  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 8329046 - 8329115
Alignment:
Q  231 gtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagc 301  Q
    ||||| |||||||||| || ||||||| ||||||||| |||||||||||  ||| ||||||||||||||||    
T  8329046 gtaacgttaataacttttgagaccaaaatgtaaccaacaaataacttaa-agaccaattcattaattaagc 8329115  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 232 - 302
Target Start/End: Complemental strand, 18470209 - 18470139
Alignment:
Q  232 taaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||| ||||||||||||| | ||||| ||||||||| |||||| |||||| || || ||||||||||||||    
T  18470209 taacattaataacttatgtggccaaaatgtaaccaacaaataatttaaggcacaaaatcattaattaagcc 18470139  T

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Target: chr6 (Bit Score: 51; Significance: 9e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 3659198 - 3659287
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||  ||||||  ||||||||||||||||||||| |||||| || |||||||||||||||| || ||||||||||||||    
T  3659198 taacttaagggaccaaattgtaag-ttaataacttatgggaccaaaatgtaactaacaaataacttaagggaccaaatcattaattaagcc 3659287  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 212 - 302
Target Start/End: Original strand, 5367661 - 5367750
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||||||||||||  ||||||| |||||||||||||| |||||| ||||||||| ||||||||||| |||| || ||||||||||||||    
T  5367661 taacttaagggaccaaattgtaacgttaataacttatggaaccaaaatgtaaccaacaaataacttaa-ggaccaaatcattaattaagcc 5367750  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 8286860 - 8286788
Alignment:
Q  230 tgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||||| ||||| ||||| ||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||    
T  8286860 tgtaacgttaattacttaagggaccaaaatgtaaccaacaaataacttaagggactaaatcattaattaagcc 8286788  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 229 - 302
Target Start/End: Complemental strand, 3659025 - 3658952
Alignment:
Q  229 ttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||| |  ||| ||||||||||    
T  3659025 ttgtaactttaataacttatgggactaaactgtaaccaataaataacttaagggaccacatcagtaattaagcc 3658952  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 250 - 302
Target Start/End: Original strand, 8287449 - 8287501
Alignment:
Q  250 ggaccaaattgtaaccaataaataacttaagggactaattcattaattaagcc 302  Q
    |||| ||| ||||||||| |||||||||||||||| || ||||||||||||||    
T  8287449 ggactaaaatgtaaccaacaaataacttaagggaccaaatcattaattaagcc 8287501  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 345 - 378
Target Start/End: Original strand, 27765318 - 27765351
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctg 378  Q
    |||||||| |||||||||||||||||||||||||    
T  27765318 atcctttattattaaagctagacttgatgagctg 27765351  T

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Target: scaffold0076 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 345 - 398
Target Start/End: Complemental strand, 1929 - 1876
Alignment:
Q  345 atcctttactattaaagctagacttgatgagctgtcaccttagccctaatcact 398  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  1929 atcctttactattaacgctagacttgatgagttgtcaccttagccctaatcact 1876  T

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Target: scaffold0008 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 212 - 299
Target Start/End: Original strand, 266866 - 266953
Alignment:
Q  212 taacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagggactaattcattaattaa 299  Q
    |||||||||||||||  || |||  ||||||||||||| ||||||| ||||||||| ||||||||||| |||| || |||||||||||    
T  266866 taacttaagggaccaaattataaggttaataacttatgtgaccaaaatgtaaccaacaaataacttaaaggaccaaatcattaattaa 266953  T

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Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 266705 - 266642
Alignment:
Q  218 aagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagg 281  Q
    |||||||||  || |||| |||||||||||| |||| ||| ||||||||| |||||||||||||    
T  266705 aagggaccaaattataacattaataacttatcggactaaaatgtaaccaacaaataacttaagg 266642  T

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Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 93743 - 93652
Alignment:
Q  190 gatttaattggctagcgaagtgtaacttaagggaccattttgtaaccttaataacttatgggaccaaattgtaaccaataaataacttaagg 281  Q
    |||||| ||||||| | ||  |||||||||||||| |  ||||||| ||||||| ||||||||||||| |||||| || |||||||||||||    
T  93743 gatttatttggctaacaaatagtaacttaagggactaaattgtaacgttaataatttatgggaccaaaatgtaactaacaaataacttaagg 93652  T

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