View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_25 (Length: 339)
Name: NF20519_low_25
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 9670269 - 9670025
Alignment:
| Q |
17 |
ataactgttatcaaacaaaactcaagggtatcaaataactactatttttcataactttcataattttatgaggaataactattacgtcattactgttcct |
116 |
Q |
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| T |
9670269 |
ataactgtcatcaaacaaaactcaagggtataaaataactactatttttcataacttacataattttatgaggaataactattacgtcattactattcct |
9670170 |
T |
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| Q |
117 |
ctgagtataccttagttgacagcaggggcgatccagaattaagttttagcgtgactaaaataatattatcatcgaaatcagtagttttagaagttttaat |
216 |
Q |
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| T |
9670169 |
ctgagtataccttagttgacagcaggggcgatccagaattaagttttagcgtgactaaaataatattatcatcgaaatcagtaattttagaagttttaat |
9670070 |
T |
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| Q |
217 |
tgggttagttttattattacaaagttcatttgtaattttaacaagg |
262 |
Q |
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| T |
9670069 |
tgggttagttttattattac-aagttcatttgtaattttaacaagg |
9670025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 43848541 - 43848606
Alignment:
| Q |
261 |
gggaaatgccttatactacgaaagtaaatccacgaataacaagaataataccatccctaccgtgtt |
326 |
Q |
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| T |
43848541 |
gggaaatgccttatactacgaaagcaaatccacgaataacaagaataacaccatccctaccgtgtt |
43848606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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