View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_27 (Length: 326)
Name: NF20519_low_27
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_27 |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 4305347 - 4305022
Alignment:
| Q |
1 |
aaatttgtatcatgcccaagagaaggattgtctgcgcccaacttggaagtattgaacatcttcaactgcgttaacctaaaatcgttaccttgtcatgtaa |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4305347 |
aaatttgtatcattcccaagagaaggattgtctgcgcccaacttgaaagtattgaacatcttcaactgcgttaacctaaaatcgttaccttgtcatgtaa |
4305248 |
T |
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| Q |
101 |
atactcttctcccaaagttagacactttgctaatgtttgattgcccaaaaattgagacgtttccagaaggaggtatgccgctaagcttaagatcattttc |
200 |
Q |
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| T |
4305247 |
atactcttctcccaaagttagacactttgctaatgtttgattgcccaaaaattgagacgtttccagaaggaggtatgccgctaagcttaagatcattttc |
4305148 |
T |
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| Q |
201 |
tatcaggaattgtgaaaaattattgaggaacccatctctaacttcgatggagatgcttacccgacttacaattagtggtccatgtgatggtgtcgaggac |
300 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
4305147 |
tataaggaattgcgaaaaattattgaggaacccatctctaacttcgatggagatgcttactcatcttacaattagtggtccatgtgatggtgtcgaggac |
4305048 |
T |
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| Q |
301 |
ttccctaacaagggttctgtgctgct |
326 |
Q |
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| T |
4305047 |
ttccctaacaagggttttgtgatgct |
4305022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 4312389 - 4312097
Alignment:
| Q |
1 |
aaatttgtatcatgcccaagagaaggattgtctgcgcccaacttggaagtattgaacatcttcaactgcgttaacctaaaatcgttaccttgtcatgtaa |
100 |
Q |
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| T |
4312389 |
aaatttgtatcattcggaagagaaggattgtctgcgcccaacttgaaatcattgtatgtttctgactgcgttaaattgaagtcattaccttgtcatgtaa |
4312290 |
T |
|
| Q |
101 |
atactcttctcccaaagttagacactttgctaatgtttgattgcccaaaaattgagacgtttccagaaggaggtatgccgctaagcttaagatcattttc |
200 |
Q |
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| T |
4312289 |
atactcttctcccaaagctaaacaatgtgcaaatgtcgaattgcccaaagattgagacgtttccagaagagggtatgccgcatagcttgagatcacttct |
4312190 |
T |
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| Q |
201 |
tatcaggaattgtgaaaaattattgaggaacccatctctaacttcgatggagatgcttacccgacttacaattagtggtccatgtgatggtgt |
293 |
Q |
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| T |
4312189 |
tgttgggaattgcgagaaattattaaggaacccatctctaactttgatggacatgcttacccgacttacaattgatggtccatgtgatggtgt |
4312097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 4248904 - 4249025
Alignment:
| Q |
1 |
aaatttgtatcatgcccaagagaaggattgtctgcgcccaacttggaagtattgaacatcttcaactgcgttaacctaaaatcgttaccttgtcatgtaa |
100 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||| | |||| | |||| ||||||||| | || || || |||||||| | || |
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| T |
4248904 |
aaatttgtatcattcaagagagaaggattgtctgcgcccaacttgacatcattgtatgtctttcgctgcgttaatttgaagtcattgccttgtcacgcaa |
4249003 |
T |
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| Q |
101 |
atactcttctcccaaagttaga |
122 |
Q |
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| T |
4249004 |
atactcttctcccaaagttaga |
4249025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 41935549 - 41935874
Alignment:
| Q |
1 |
aaatttgtatcatgcccaagagaaggattgtctgcgcccaacttggaagtattgaacatcttcaactgcgttaacctaaaatcgttaccttgtcatgtaa |
100 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||| || |||| |||||||||| ||| ||||| |||| || |||||||||||||||| |
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| T |
41935549 |
aaatttgtatcattctcaagagaaggattgtctgcgcccaacttgaaacaattgcacatcttcaattgctttaacttaaagtcattaccttgtcatgtaa |
41935648 |
T |
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| Q |
101 |
atactcttctcccaaagttagacactttgctaatgtttgattgcccaaaaattgagacgtttccagaaggaggtatgccgctaagcttaagatcattttc |
200 |
Q |
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|||||||||||||||||||| || | ||| ||||| |||||||||||| | ||||| |||||||||||| |||||||||| || || |||||| ||| |
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| T |
41935649 |
atactcttctcccaaagttaaacgatgtgcaaatgtatgattgcccaaatactgagatgtttccagaagggggtatgccgcgtagtttgagatcactttg |
41935748 |
T |
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| Q |
201 |
tatcaggaattgtgaaaaattattgaggaacccatctctaacttcgatggagatgcttacccgacttacaattagtggtccatgtgatggtgtcgaggac |
300 |
Q |
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| | | |||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| ||| |||||||||||||||||| | |
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| T |
41935749 |
tgttggaaattgtgagaaattattgaggaatccatctctaacttcgatggacatgcttacccgacttaaaatttatggaccatgtgatggtgtcgagtcc |
41935848 |
T |
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| Q |
301 |
ttccctaacaagggttctgtgctgct |
326 |
Q |
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| T |
41935849 |
ttcccgagcaagggttttgtgttgct |
41935874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34800635 - 34800595
Alignment:
| Q |
1 |
aaatttgtatcatgcccaagagaaggattgtctgcgcccaa |
41 |
Q |
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||||||||||||| |||||||||||||||||| |||||||| |
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| T |
34800635 |
aaatttgtatcattcccaagagaaggattgtccgcgcccaa |
34800595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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