View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_28 (Length: 323)
Name: NF20519_low_28
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 41539522 - 41539825
Alignment:
| Q |
1 |
gaaaagtgtacaagggttgcatcaaagacttgcatctgatatggtaaactaaaaattgaagagttacagataattttcatgctataaatacataggaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41539522 |
gaaaagtgtacaagggttgcatcaaagacttgcatctgatatggtaaactaaaaattgaagacttacagataattttcatgctataaatacataggaaaa |
41539621 |
T |
|
| Q |
101 |
taagcaacctcaaacatctacacaacaattaggaacatatacactagattttctgcaaagggaaattaagatcatttgaaaaagaggaaaaataagcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41539622 |
taagcaacctcaaacatctacacaacaattaggaacatatacactagattttctgcaaagggaaattaagatcatttgaaaaagaggaaaaataagcaaa |
41539721 |
T |
|
| Q |
201 |
aatgggagaacaagtgagcaacaagtagattctagctgcagactatataactggtaatccaaaacaaacagacatgtatttgaaaacctctaccattagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41539722 |
aatgggagaacaagtgagcaacaagtagattctagctgtagactatataactggtaatccaaaacaaacagacatgtatttgaaaacctctaccattagc |
41539821 |
T |
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| Q |
301 |
ttac |
304 |
Q |
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|||| |
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| T |
41539822 |
ttac |
41539825 |
T |
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