View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20519_low_33 (Length: 307)

Name: NF20519_low_33
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20519_low_33
NF20519_low_33
[»] chr4 (12 HSPs)
chr4 (10-163)||(27924031-27924184)
chr4 (209-307)||(27923888-27923986)
chr4 (97-166)||(16467894-16467962)
chr4 (103-166)||(779742-779805)
chr4 (84-166)||(38179822-38179904)
chr4 (97-166)||(52708540-52708609)
chr4 (92-163)||(35803553-35803624)
chr4 (92-166)||(32004408-32004482)
chr4 (97-160)||(46737247-46737310)
chr4 (61-166)||(53599296-53599400)
chr4 (89-166)||(26784771-26784848)
chr4 (212-244)||(11086378-11086410)
[»] chr7 (4 HSPs)
chr7 (84-166)||(28749904-28749986)
chr7 (98-166)||(10701643-10701711)
chr7 (98-166)||(10980654-10980722)
chr7 (92-166)||(24613183-24613257)
[»] chr5 (4 HSPs)
chr5 (91-164)||(40197666-40197739)
chr5 (97-166)||(39074999-39075068)
chr5 (89-127)||(5775641-5775679)
chr5 (92-166)||(3247729-3247803)
[»] scaffold0024 (1 HSPs)
scaffold0024 (67-166)||(36212-36311)
[»] chr8 (4 HSPs)
chr8 (91-166)||(11517613-11517688)
chr8 (97-157)||(21575444-21575504)
chr8 (101-164)||(45120968-45121031)
chr8 (210-258)||(45121066-45121114)
[»] chr1 (10 HSPs)
chr1 (86-166)||(27858741-27858821)
chr1 (66-166)||(24084114-24084214)
chr1 (84-154)||(15646116-15646186)
chr1 (97-166)||(14321068-14321137)
chr1 (102-166)||(44107698-44107762)
chr1 (96-166)||(35838368-35838437)
chr1 (103-166)||(1656806-1656870)
chr1 (212-244)||(1905714-1905746)
chr1 (212-244)||(8772363-8772395)
chr1 (212-244)||(44603734-44603766)
[»] chr6 (4 HSPs)
chr6 (105-165)||(9062900-9062960)
chr6 (90-166)||(23898803-23898879)
chr6 (97-166)||(8307907-8307976)
chr6 (79-166)||(27133900-27133987)
[»] chr3 (7 HSPs)
chr3 (105-166)||(11083223-11083284)
chr3 (97-166)||(51672509-51672578)
chr3 (83-159)||(52201286-52201362)
chr3 (104-166)||(45745514-45745576)
chr3 (97-166)||(24924587-24924656)
chr3 (210-258)||(11083322-11083370)
chr3 (212-244)||(32375196-32375228)
[»] chr2 (2 HSPs)
chr2 (65-166)||(37807206-37807307)
chr2 (65-166)||(37985116-37985217)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 27924184 - 27924031
Alignment:
Q  10 aagaatatggcccgtggttttaatctctaactactaataatataataagaattagggaaatgctaacgggtgtccttagggcactaattaagaagattaa 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||| |||||||||||||    
T  27924184 aagaagatggcccgtggttttaatctctaactactaataatataataagaattagggaaatgttaattggtgtccttatggcactagttaagaagattaa 27924085  T
Q  110 tatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaa 163  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  27924084 tatagaaattatgcattggaaattggtggaaagttgaatgtttaactttataaa 27924031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 209 - 307
Target Start/End: Complemental strand, 27923986 - 27923888
Alignment:
Q  209 gacatccttaaccattgcccttagggcaccggttagttaaaccctaaaaactaacatttaagaaaataaagttgcttatatgatatgccgatttctcaa 307  Q
    ||||||||||||||||| ||||||| ||| | |||| |||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27923986 gacatccttaaccattgtccttaggacactgattagctaaactaaaaaaactaacatttaagaagataaagttgcttatatgatatgccgatttctcaa 27923888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 16467962 - 16467894
Alignment:
Q  97 ttaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||| |||||    
T  16467962 ttaagaagattaatatagaaattatgcattggaaatt-gatgaaagttgaatgtttaactttatgaaagt 16467894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 779742 - 779805
Alignment:
Q  103 agattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||||||||||||||||||||||| |||||| ||  |||||||||||||||||||||| |||||    
T  779742 agattaatatagaaattatgcatttgaaattggtgaaaagttgaatgtttaactttatgaaagt 779805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 38179822 - 38179904
Alignment:
Q  84 cttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||  || |||||||||||||||||||||||||| ||| ||||||  |  |||||||||||||||||||||| |||||    
T  38179822 cttagggcgttagttaagaagattaatatagaaattatgtattagaaatttatgaaaagttgaatgtttaactttatgaaagt 38179904  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 52708609 - 52708540
Alignment:
Q  97 ttaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||||||| |||||||||||||| | ||||| ||||||||  |||||||||||||||||||||| |||||    
T  52708609 ttaagaaggttaatatagaaattgtacattgaaaattagtgaaaagttgaatgtttaactttatgaaagt 52708540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 163
Target Start/End: Complemental strand, 35803624 - 35803553
Alignment:
Q  92 actaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaa 163  Q
    |||| |||||||| |||||||||||||||||||||| ||||| ||| |||||  ||| ||||||||||||||    
T  35803624 actagttaagaagtttaatatagaaattatgcattgaaaattggtaaaaagtgaaatatttaactttataaa 35803553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 32004408 - 32004482
Alignment:
Q  92 actaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||| ||||||||||||||||||||||||||||||  ||||| |   ||||| |||||||||||||||| |||||    
T  32004408 actagttaagaagattaatatagaaattatgcatttaaaattggggaaaagtggaatgtttaactttatgaaagt 32004482  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 160
Target Start/End: Original strand, 46737247 - 46737310
Alignment:
Q  97 ttaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttat 160  Q
    |||||||||| |||||||||||| |||||||||||||  |  ||||| ||||||||||||||||    
T  46737247 ttaagaagataaatatagaaattctgcattggaaattgatgaaaagtggaatgtttaactttat 46737310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 166
Target Start/End: Original strand, 53599296 - 53599400
Alignment:
Q  61 ttagggaaatgctaacgggtgtccttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttat 160  Q
    ||||| ||||||||||  ||||||| ||||||||| |||| || ||||||||||||||||| |||| ||||||  |  ||| |  |||||||||||||||    
T  53599296 ttaggaaaatgctaactagtgtcctaagggcactacttaaaaa-attaatatagaaattatacattagaaattgatgaaaaatgtaatgtttaactttat 53599394  T
Q  161 aaaagt 166  Q
     |||||    
T  53599395 gaaagt 53599400  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 26784848 - 26784771
Alignment:
Q  89 ggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||| ||||| ||| |||| |||||||| |||||||||||||  || ||||| | ||||| |||||| |||||||    
T  26784848 ggcactagttaaggagactaatttagaaattttgcattggaaattgttaaaaagtggtatgttcaactttttaaaagt 26784771  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 11086378 - 11086410
Alignment:
Q  212 atccttaaccattgcccttagggcaccggttag 244  Q
    |||||||||||||||||||||||||| ||||||    
T  11086378 atccttaaccattgcccttagggcactggttag 11086410  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 28749904 - 28749986
Alignment:
Q  84 cttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||  |  ||||| |||||||||||||||| |||||    
T  28749904 cttagggcactagttaagaagattaatatagaaattatgcattggaaattgatgaaaagtagaatgtttaactttatgaaagt 28749986  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 10701643 - 10701711
Alignment:
Q  98 taagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||||||||||||||||  ||| |||||||||  |||||||||||||||| |||||||||||    
T  10701643 taagaagattaatatagaaattatatattagaaattagtgaaaagttgaatgtttaagtttataaaagt 10701711  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 10980654 - 10980722
Alignment:
Q  98 taagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||||||||||||||| |||||||| |||| ||||||||  ||||| ||||||||||||||||||||||    
T  10980654 taagaagattaatatataaattatgtattgaaaattagtgaaaagtagaatgtttaactttataaaagt 10980722  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 24613183 - 24613257
Alignment:
Q  92 actaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||| ||||||| | ||||||||||||| |||||||  |||||||  ||||| ||||||| |||||||| |||||    
T  24613183 actagttaagaaaactaatatagaaattttgcattgagaattagtgaaaagtagaatgttcaactttatgaaagt 24613257  T

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Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 91 - 164
Target Start/End: Complemental strand, 40197739 - 40197666
Alignment:
Q  91 cactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaa 164  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||| |||||||||    
T  40197739 cactagttaagaagattaatatagaaattatgcattggaaattagtgaaaagtggaatgtttaattttataaaa 40197666  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 39074999 - 39075068
Alignment:
Q  97 ttaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||||||||||||||||||||||| |||||  || || || ||||||||||||||||||||||    
T  39074999 ttaagaagattaatatagaaattatgcattgaaaattgataaaaggtggaatgtttaactttataaaagt 39075068  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 5775679 - 5775641
Alignment:
Q  89 ggcactaattaagaagattaatatagaaattatgcattg 127  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  5775679 ggcactagttaagaagattaatatagaaattatgcattg 5775641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 166
Target Start/End: Complemental strand, 3247803 - 3247729
Alignment:
Q  92 actaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||| |||||||||||||||||||| |||||||||  ||||| ||  |||||  |||||||||||| || |||||    
T  3247803 actagttaagaagattaatatagaagttatgcattaaaaattggtgaaaagtgtaatgtttaacttcatgaaagt 3247729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 67 - 166
Target Start/End: Original strand, 36212 - 36311
Alignment:
Q  67 aaatgctaacgggtgtccttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||  ||||||||||||||||| ||||||||| || |||||||||||||||||||||||  ||  ||| | |||||||||||||||| |||||    
T  36212 aaatgctaactagtgtccttagggcactagttaagaagactattatagaaattatgcattggaaatcggtgaaaaatggaatgtttaactttatgaaagt 36311  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 11517688 - 11517613
Alignment:
Q  91 cactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||||| |||||    
T  11517688 cactaattaagaaaattaatataaaaattatgcattggaaattggtaaaaagtagaatgtttaactttatgaaagt 11517613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 21575444 - 21575504
Alignment:
Q  97 ttaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactt 157  Q
    ||||||||||||||||||||||||| ||||||||||| ||  ||| | |||||||||||||    
T  21575444 ttaagaagattaatatagaaattatacattggaaattggttaaaaatagaatgtttaactt 21575504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 45120968 - 45121031
Alignment:
Q  101 gaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaa 164  Q
    ||||||||||||||||||||||||| |||| || ||  ||||| |||| |||||||||||||||    
T  45120968 gaagattaatatagaaattatgcatcggaagttggtgaaaagtggaatatttaactttataaaa 45121031  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 45121066 - 45121114
Alignment:
Q  210 acatccttaaccattgcccttagggcaccggttagttaaaccctaaaaa 258  Q
    |||||||||||||||||||||||||||  ||||||  ||||||||||||    
T  45121066 acatccttaaccattgcccttagggcattggttagcaaaaccctaaaaa 45121114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 27858821 - 27858741
Alignment:
Q  86 tagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||| ||  |||||||||||||||| ||||| |||||    
T  27858821 tagggcactaattaagaagattaatataaaaattatgcgttgaaaattggtgaaaagttgaatgtttaagtttatgaaagt 27858741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 166
Target Start/End: Original strand, 24084114 - 24084214
Alignment:
Q  66 gaaatgctaacgggtgtccttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaag 165  Q
    |||||||||||  ||| ||||||| ||||| |||| |||||||||||| |||||||| |||| |||||  || ||||| |||||||||||||||| ||||    
T  24084114 gaaatgctaactagtgcccttaggacactagttaaaaagattaatataaaaattatgtattgaaaattgataaaaagtggaatgtttaactttatgaaag 24084213  T
Q  166 t 166  Q
    |    
T  24084214 t 24084214  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 15646116 - 15646186
Alignment:
Q  84 cttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaa 154  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||||  |  ||||| ||||||||||    
T  15646116 cttagggcactagttaagaagattaatatagaaattatgcattgaaaattgatgaaaagtggaatgtttaa 15646186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 14321137 - 14321068
Alignment:
Q  97 ttaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||||||||||||||||||||||| |||||  |  |||||  ||||||||| ||||| |||||    
T  14321137 ttaagaagattaatatagaaattatgcattgaaaattgatgaaaagtaaaatgtttaattttatgaaagt 14321068  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 44107698 - 44107762
Alignment:
Q  102 aagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||| ||||||||| |||||||||| ||  ||||| ||||||||| |||||| |||||    
T  44107698 aagattaatattgaaattatgtattggaaattggtgaaaagtagaatgtttacctttatgaaagt 44107762  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 35838437 - 35838368
Alignment:
Q  96 attaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||| |||||| ||||||||||||| ||||| ||  ||||| ||||| |||||||||| |||||    
T  35838437 attaagaagataaatataaaaattatgcattgaaaattggtgaaaagtagaatg-ttaactttatgaaagt 35838368  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 1656870 - 1656806
Alignment:
Q  103 agattaatatagaaattatgcattggaaattagt-agaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||| ||||||||||||  ||||| || | ||||| |||||||||| |||||||||||    
T  1656870 agattaatatataaattatgcattataaattggtgaaaaagtggaatgtttaaatttataaaagt 1656806  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 1905746 - 1905714
Alignment:
Q  212 atccttaaccattgcccttagggcaccggttag 244  Q
    |||||||||||||||||||||||||| ||||||    
T  1905746 atccttaaccattgcccttagggcactggttag 1905714  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 8772395 - 8772363
Alignment:
Q  212 atccttaaccattgcccttagggcaccggttag 244  Q
    |||||||||||||||||||||||||| ||||||    
T  8772395 atccttaaccattgcccttagggcactggttag 8772363  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 44603734 - 44603766
Alignment:
Q  212 atccttaaccattgcccttagggcaccggttag 244  Q
    |||||||||||||||||||||||||| ||||||    
T  44603734 atccttaaccattgcccttagggcactggttag 44603766  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 9062960 - 9062900
Alignment:
Q  105 attaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaag 165  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||||||||||| ||||    
T  9062960 attaatatagaaattatgcattggaaattggtgaaaagttgaatgtttaactttatgaaag 9062900  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 23898879 - 23898803
Alignment:
Q  90 gcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||||| ||||||||||||| |||||||||||| ||||||||||  | |||||| |||||||||||||||| |||||    
T  23898879 gcactagttaagaagattaacatagaaattatgtattggaaattgatggaaagtggaatgtttaactttatgaaagt 23898803  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 8307907 - 8307976
Alignment:
Q  97 ttaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||| |||||||||||||||||||||||||||||||  |  ||||| |||||||| | |||||||||||    
T  8307907 ttaaggagattaatatagaaattatgcattggaaattgatgaaaagtggaatgtttgattttataaaagt 8307976  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 27133900 - 27133987
Alignment:
Q  79 gtgtccttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||| |||| |||| || |||||||||||||||||| |||| ||||||| ||||| ||  ||||| |||||||||||| ||| |||||    
T  27133900 gtgttcttaaggcattagttaagaagattaatatagtaattttgcattgaaaattggtgaaaagtggaatgtttaactatatgaaagt 27133987  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 11083223 - 11083284
Alignment:
Q  105 attaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||||||||||||||||||| ||||||| |||  ||| | ||||||||||||||||||||||    
T  11083223 attaatatagaaattatgcaatggaaatgagtgaaaaatggaatgtttaactttataaaagt 11083284  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 51672509 - 51672578
Alignment:
Q  97 ttaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||||||||||||||||||||||||||||| |||||| ||  ||| |  ||||||||||||||| |||||    
T  51672509 ttaagaagattaatatagaaattatgcattagaaattggtgaaaaatgaaatgtttaactttattaaagt 51672578  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 52201286 - 52201362
Alignment:
Q  83 ccttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaacttta 159  Q
    ||||| ||||||| ||||||||||||||||| ||||| || ||| |||||| ||| |||||  ||||||||||||||    
T  52201286 ccttaaggcactagttaagaagattaatatataaattttggattagaaattggtaaaaagtgaaatgtttaacttta 52201362  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 45745514 - 45745576
Alignment:
Q  104 gattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    |||||||||||||||||||||||| |||||  || ||| | |||||||||||||||| |||||    
T  45745514 gattaatatagaaattatgcattgaaaattgataaaaaatggaatgtttaactttatgaaagt 45745576  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 97 - 166
Target Start/End: Complemental strand, 24924656 - 24924587
Alignment:
Q  97 ttaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaagt 166  Q
    ||||||||||||||||||||||||||||||  ||||| ||  |||||  |||||||| |||||| |||||    
T  24924656 ttaagaagattaatatagaaattatgcattaaaaattggtgaaaagtataatgtttagctttatgaaagt 24924587  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 11083322 - 11083370
Alignment:
Q  210 acatccttaaccattgcccttagggcaccggttagttaaaccctaaaaa 258  Q
    ||||| |||||||||||||||||||||| ||||||  |||||| |||||    
T  11083322 acatctttaaccattgcccttagggcactggttagaaaaacccaaaaaa 11083370  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 32375228 - 32375196
Alignment:
Q  212 atccttaaccattgcccttagggcaccggttag 244  Q
    |||||||||||||||||||||||||| ||||||    
T  32375228 atccttaaccattgcccttagggcactggttag 32375196  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 37807206 - 37807307
Alignment:
Q  65 ggaaatgctaacgggtgtccttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaa 164  Q
    ||||||||||||  ||| ||| ||  ||||| ||||||||||||||||||||||||||||||  ||||| ||  ||| |  ||||||||||||||| |||    
T  37807206 ggaaatgctaaccagtgccctaagctcactagttaagaagattaatatagaaattatgcattacaaattggtgaaaaatgaaatgtttaactttatgaaa 37807305  T
Q  165 gt 166  Q
    ||    
T  37807306 gt 37807307  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 37985116 - 37985217
Alignment:
Q  65 ggaaatgctaacgggtgtccttagggcactaattaagaagattaatatagaaattatgcattggaaattagtagaaagttgaatgtttaactttataaaa 164  Q
    |||||| |||||  || |||| ||||||||| |||| |||||||||||||||||||| ||||| ||||| ||  |||||  |||||| |||||||| |||    
T  37985116 ggaaatactaaccagtatcctaagggcactagttaataagattaatatagaaattatacattgaaaattggtgaaaagtgaaatgttaaactttatgaaa 37985215  T
Q  165 gt 166  Q
    ||    
T  37985216 gt 37985217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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