View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_36 (Length: 283)
Name: NF20519_low_36
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 34 - 274
Target Start/End: Complemental strand, 36466568 - 36466321
Alignment:
| Q |
34 |
atatatataacttggtcaatttcaaagtaagtaagcactatgtgtttattaaattctttaaagttaaatagaggatttatataacttgagtcatatgtat |
133 |
Q |
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| T |
36466568 |
atatatataacttggtcaatttcaaagtaaataagcactatgtgttaattaaattctt-aaagttaaatagagtatctatataacttgagtcatatgtat |
36466470 |
T |
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| Q |
134 |
ttgactcaaaattagactagatacatttgacttttcatttattatactatttaaagactagagggga--------taagcatgtggatattgaattgata |
225 |
Q |
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| T |
36466469 |
ttgactcaaaattagactagatacatttgacttttcatttattacactatttaaagactagaggggaaatttaattaagcatgtggatattgaattgata |
36466370 |
T |
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| Q |
226 |
attaatctttgtggtgcatgtaggggatgaaatttggttggagaataat |
274 |
Q |
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| T |
36466369 |
attaatctttgtggtgcatgtaggggatgaaatttggttggagaataat |
36466321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 271
Target Start/End: Complemental strand, 36476659 - 36476618
Alignment:
| Q |
230 |
atctttgtggtgcatgtaggggatgaaatttggttggagaat |
271 |
Q |
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| T |
36476659 |
atctttgtggtgcatctaggggatgaaatttggttggagaat |
36476618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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