View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_37 (Length: 272)
Name: NF20519_low_37
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 43327549 - 43327788
Alignment:
| Q |
17 |
catcatattgttgaattatgctactaagaaaggagtgcttgctggtgcagatgatggaaaagttaagaaagtattgcttaatgtggatcatgctactata |
116 |
Q |
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| T |
43327549 |
catcatattgttgaattatgctactaagaaaggaatgcttgctggtgcagatgatggaaaagttaagaaagtattgcttaatgtggatcatgctactata |
43327648 |
T |
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| Q |
117 |
ccataacatctgacacacacaattttccttttcattgtaattcatttaagtacattcgatacagtctatatcattcttctccaatttactgctactcatc |
216 |
Q |
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| T |
43327649 |
ccataacatctgacacacacaattttccttttcattgtaattccttcaagtacattcgatacagtctatatcattcttctccaatttactgctac---tc |
43327745 |
T |
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| Q |
217 |
ataaggattaaatccttacaccaaatcctttaaagcacaagaa |
259 |
Q |
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| T |
43327746 |
ataaggattaaatccttacacaaaatcctttaaagcaaaagaa |
43327788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 248
Target Start/End: Complemental strand, 43327206 - 43327126
Alignment:
| Q |
165 |
agtacattcgatacagtctatatcattcttctccaatttactgctactcatcataaggattaaatccttacaccaaatccttta |
248 |
Q |
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| T |
43327206 |
agtacattcaatacaatctaaatcattcttctccaatttgttgctac---tcataaggatcaaacccttacaccaaatccttta |
43327126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 259
Target Start/End: Complemental strand, 33882971 - 33882853
Alignment:
| Q |
138 |
attttccttttcattgtaattcatttaagtacattcgatacagtctatatcattcttctccaatttactgctactcatcataaggattaaatccttacac |
237 |
Q |
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| T |
33882971 |
attttcctttcaattgtaattcttctaagtacatttaatatgatccatatcattcttttccaatttattgctactcat---aaagatcaaacccttacac |
33882875 |
T |
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| Q |
238 |
caaatcctttaaagcacaagaa |
259 |
Q |
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| T |
33882874 |
caaatccattaaaccacaagaa |
33882853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 35995614 - 35995752
Alignment:
| Q |
120 |
taacatctgacacacacaattttccttttcattgtaattcattt--aagtacattcgatacagtctatatcattcttctccaatttactgctactcatca |
217 |
Q |
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| T |
35995614 |
taacatgtgacacacaacattttcctttcaattgtaatttttttttaaatacattcaatacaatacatatctttcttctccaatttgttgctactcat-- |
35995711 |
T |
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| Q |
218 |
taaggattaaatccttacaccaaatcctttaaagcacaagaa |
259 |
Q |
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| T |
35995712 |
-aaggatcaaactcttacagcaaatccattaaagcacaagaa |
35995752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 49138319 - 49138368
Alignment:
| Q |
150 |
attgtaattcatttaagtacattcgatacagtctatatcattcttctcca |
199 |
Q |
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| T |
49138319 |
attgtaattcctctaagtacattcaatacaatccatatcattcttctcca |
49138368 |
T |
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