View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_4 (Length: 667)
Name: NF20519_low_4
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 646; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 1 - 650
Target Start/End: Complemental strand, 1120024 - 1119375
Alignment:
| Q |
1 |
cattgcttattgaagttacatattagttaattttttcccttcaaattttgcactattattttaaaggaagtatgtttgttttgttggagcaaaggtttat |
100 |
Q |
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| T |
1120024 |
cattgcttattgaagttacatattagttaattttttcccttcaaattttgcactattattttaaaggaagtatgtttgttttgttggagcaaaggtttat |
1119925 |
T |
|
| Q |
101 |
ttaaatcaatatgtaacaacaaatcatcctcaatttctaaggtaacaacagataatcctcaaatttctaatacaaaatgacattagtctctactcaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1119924 |
ttaaatcaatatgtaacaacaaatcatcctcaatttctaaggtaacaacagataatcctcaaatttctaatacaaaatgacattagtctctactcaacaa |
1119825 |
T |
|
| Q |
201 |
cagatctgatatatatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgatttacatttgctaaagtaatatctataaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1119824 |
cagatctgatatatatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgatttacatttgctaaagtaatatctataaa |
1119725 |
T |
|
| Q |
301 |
agaaaaaattattttctaaagtactacccgcactaattcacaatttcctctcaactatttatgcagctattatcgacttgtcgtaatagacccaccaaca |
400 |
Q |
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| T |
1119724 |
agaaaaaattattttctaaagtactacccgcactaattcacaatttcctctcaactatttatgcagctattatcgacttgtcgtaatagacccaccaaca |
1119625 |
T |
|
| Q |
401 |
ggacacacaaaaacttcatcctttgagagtgtgttgttgaaacgtggcatgtatttatgctaatctgttgagcaatcaatagtgttataatattcgtcag |
500 |
Q |
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| T |
1119624 |
ggacacacaaaaacttcatcctttgagagtgtgttgttgaaacgtggcatgtatttatgctaatctgttgagcaatcaatagtgttataatattcgtcag |
1119525 |
T |
|
| Q |
501 |
tctattgaaaaagaagattacctaagtcatattatcttttaaaaacatgcgcaagattcatctctatgagcagcttgtctatatcctttagcttcatatt |
600 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1119524 |
tctattgaaaaagaagcttacctaagtcatattatcttttaaaaacatgcgcaagattcatctctatgagcagcttgtctatatcctttagcttcatatt |
1119425 |
T |
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| Q |
601 |
cctacacgatcaatcaagcttttagttagtccttctaccgggactcaaat |
650 |
Q |
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| T |
1119424 |
cctacacgatcaatcaagcttttagttagtccttctaccgggactcaaat |
1119375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 175 - 397
Target Start/End: Complemental strand, 1113165 - 1112943
Alignment:
| Q |
175 |
aaatgacattagtctctactcaacaacagatctgatatatatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgattt |
274 |
Q |
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| T |
1113165 |
aaatgacattagtctctactcaacaacagatctgatat----gctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgattt |
1113070 |
T |
|
| Q |
275 |
acatttgctaaagtaatatctataaaagaaaaaattattttctaaagta----ctacccgcactaattcacaatttcctctcaactatttatgcagctat |
370 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||| |||| ||| |||||||||||||||| |
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| T |
1113069 |
acatttgctaaagtactatctataaaagaaaaaattatttgctaaagtactagctacctgcactaattcataatatcctatcatctatttatgcagctat |
1112970 |
T |
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| Q |
371 |
tatcgacttgtcgtaatagacccacca |
397 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
1112969 |
tatcaacttgtcgtaatagacccacca |
1112943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 409 - 653
Target Start/End: Complemental strand, 1112394 - 1112146
Alignment:
| Q |
409 |
aaaaacttcatcctttgagagtgtgttgttgaaacgtggcatgtatttatgctaatctgtt---gagcaatcaatagtgttataatattcgtcagtctat |
505 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |||||||||||||||||||| ||| ||||||||| |
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| T |
1112394 |
aaaaacttcatcctttgagagtgtgttgttgaaacgtggcatatatttatgctaacctcttcttgagcaatcaatagtgttata---ttcatcagtctat |
1112298 |
T |
|
| Q |
506 |
tgaaaaagaagattacctaagtcatattatcttttaaaaacatgcgcaagattcatctctatgagcagcttgtctatatcctttagcttcatattcctac |
605 |
Q |
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||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| |||| || |||||||||||||||||| |
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| T |
1112297 |
tgaaaaagaagctcacctaagtcattttatcttttaaaaacatgctcaagattcatctctatgagtagcttgtttatagcccttagcttcatattcctac |
1112198 |
T |
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| Q |
606 |
acgatcaatcaagcttttagttagt----ccttctaccgggactcaaatgat |
653 |
Q |
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| T |
1112197 |
acgatcaatcaagcttttagttagtcctaccttctaccgggactcaaatgat |
1112146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Original strand, 39627222 - 39627276
Alignment:
| Q |
61 |
ttaaaggaagtatgtttgttttgttggagcaaaggtttatttaaatcaatatgta |
115 |
Q |
| |
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||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
39627222 |
ttaaaagaagtatgcttgttttgttgctgcaaaagtttatttaaatcaatatgta |
39627276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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