View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_41 (Length: 268)
Name: NF20519_low_41
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 23 - 184
Target Start/End: Original strand, 40897849 - 40898010
Alignment:
| Q |
23 |
gaggaacacagatgcatttctctccttatggctctaccatctataaatagaaaacctaagacagcaacaagtatcaccaccaacattacactcaatagag |
122 |
Q |
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| T |
40897849 |
gaggcacacaaatgcatttctctccttatggctctaccatctataaatagaaaacctaagacagcaacaagtatcattactaacattacattcaatagag |
40897948 |
T |
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| Q |
123 |
ccaatctcattttcttataactcgcatcaaatccattgcttcgtacagccaaaacatacacc |
184 |
Q |
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| T |
40897949 |
ccaatcccattttcttgtaactcacatcaaatccatttcttggtacagccaaaacattcacc |
40898010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 40898079 - 40898118
Alignment:
| Q |
229 |
tcatttctagggagacctacactactacactatattacct |
268 |
Q |
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| T |
40898079 |
tcatttttagggagacctacactactacactttattacct |
40898118 |
T |
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