View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_47 (Length: 250)
Name: NF20519_low_47
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 105 - 241
Target Start/End: Complemental strand, 46424844 - 46424708
Alignment:
| Q |
105 |
ttatatatctccacttttgcgtaggaacactaaaaattcttatttagggtactctctacagggtgaatcagtacaagccacattgtgtagtacttgtgaa |
204 |
Q |
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| T |
46424844 |
ttatacatctccacttttgcgtaggaacactaaaaattcttatttagggtactctctacagggtgaatcagtacaagccacattgtgtagtacttgtgga |
46424745 |
T |
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| Q |
205 |
tatatacataaaaaagctaaaatttggatatattctt |
241 |
Q |
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| T |
46424744 |
tatatacataaaaaagctaaaatttggatgtattctt |
46424708 |
T |
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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46424915 - 46424875
Alignment:
| Q |
1 |
cactttacatttaacctaaatttattataatcaattttaca |
41 |
Q |
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| T |
46424915 |
cactttacatttaacctaaatttattataatcaattttaca |
46424875 |
T |
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