View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20519_low_54 (Length: 239)
Name: NF20519_low_54
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 46424992 - 46425159
Alignment:
| Q |
60 |
gggggtccaaatcttggatacatttatgtaagtgggttgaatccatcttatcttacagtaacaactaacttcaagttagaatccattctggagacaaagt |
159 |
Q |
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| T |
46424992 |
gggggtccaaatcttggatacatttatgtaagtgggttgaatccatcttatcttatagtaacaactaacttcaagttagaatccattctggagacaaagt |
46425091 |
T |
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| Q |
160 |
caacccta-ctagagcatatccattcgcacaagtttaatcaaattctacacttatgaatgcaataaat |
226 |
Q |
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| T |
46425092 |
caaccctacctagagcatatccatccgcacaagtttaatcaaattctacacttatgaatgcaataaat |
46425159 |
T |
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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 46424936 - 46424972
Alignment:
| Q |
23 |
gaccgataattcaggatcaatacagtcgtccaccagc |
59 |
Q |
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| T |
46424936 |
gaccgataattcaggatcaatacagtcgtccaccagc |
46424972 |
T |
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