View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20519_low_64 (Length: 231)
Name: NF20519_low_64
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_64 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 4305682 - 4305487
Alignment:
| Q |
9 |
agattgttggtctgtgtttgcaaaccatgcatgcctttctccaaagcactccattgagaatatggaactccaaaaaattggca--gagattattagaaaa |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4305682 |
agattgttggtctgtgtttgaaaaccatgcatgcctttctctaaaacactccattgagaaaatggaactccaaaaaattggcaaagagattattagaaaa |
4305583 |
T |
|
| Q |
107 |
tgtcaaggattgcctttagcagcacaatcacttgggggcttattgcgaagtaaacgtgacatcaaggattggaataatatactaactagtaccatt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
4305582 |
tgtcaaggattgcctttagcagcacaatcacttgggggcttattgcgaagtaaacgtgacatcaaggattgcaataatatactaactagtaacatt |
4305487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 4314544 - 4314349
Alignment:
| Q |
9 |
agattgttggtctgtgtttgcaaaccatgcatgcctttctccaaagcactccattgagaatatggaactccaaaaaattggca--gagattattagaaaa |
106 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||||||||||||||| | | || |||||||||||| || |||| |||||||| |||||| ||||||| |
|
|
| T |
4314544 |
agattgttggtcagtgtttggaaatcatgcatgcctttctccaaaagaatacactgagaatatggatcttcaaataattggcaaagagattgctagaaaa |
4314445 |
T |
|
| Q |
107 |
tgtcaaggattgcctttagcagcacaatcacttgggggcttattgcgaagtaaacgtgacatcaaggattggaataatatactaactagtaccatt |
202 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || |||||||||||||||| ||||| |||| |
|
|
| T |
4314444 |
tgtaagggattgcctttagcagcacaatcacttgggggcttgttgcgaagtaaacgggacatcaatgactggaataatatactaaatagtaacatt |
4314349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 4253942 - 4254124
Alignment:
| Q |
9 |
agattgttggtctgtgtttgcaaaccatgcatgcctttctccaaagcactccattgagaatatggaactccaaaaaattggca--gagattattagaaaa |
106 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| | | ||| |||||| ||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
4253942 |
agattgttggtcggtgtttgcaaaccatgcatgcctttctccagaagaaaccactgagaacatggatctccaaaaaattggcaaagagattgttagaaaa |
4254041 |
T |
|
| Q |
107 |
tgtcaaggattgcctttagcagcacaatcacttgggggcttattgcgaagtaaacgtgacatcaaggattggaataatatact |
189 |
Q |
| |
|
||| | |||||||||||||||||||| ||| |||||||||| |||||| ||||| ||||||| | ||| |||||||||||||| |
|
|
| T |
4254042 |
tgtaagggattgcctttagcagcacagtcatttgggggcttgttgcgacgtaaatgtgacataagggactggaataatatact |
4254124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 4246823 - 4247006
Alignment:
| Q |
9 |
agattgttggtctgtgtttgcaaaccatgcatgcctttctccaaagcactccattgagaatatggaactccaaaaaattggcagaga--ttattagaaaa |
106 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||| || | || |||| ||||| | ||| |||||||||| ||| ||||| || |||||||| |
|
|
| T |
4246823 |
agattgttggtcagtgtttgcaatccatgcatgcctttcacccgaacaatccaccgagaagacggatctccaaaaaactggtagagagattgttagaaaa |
4246922 |
T |
|
| Q |
107 |
tgtcaaggattgcctttagcagcacaatcacttgggggcttattgcgaagtaaacgtgacatcaaggattggaataatatacta |
190 |
Q |
| |
|
||| | |||||||| ||||||||| |||||||||| ||| | |||||||||| || |||||||| |||||||||||| ||||| |
|
|
| T |
4246923 |
tgtaagggattgccattagcagcaaaatcacttggaggccttttgcgaagtacacatgacatcagtgattggaataatctacta |
4247006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 4305444 - 4305409
Alignment:
| Q |
196 |
taccattatctccctccctatttgaaatgttgcttt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4305444 |
taccattatctccctccctatttgaaatgttgcttt |
4305409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 202
Target Start/End: Original strand, 41933385 - 41933580
Alignment:
| Q |
9 |
agattgttggtctgtgtttgcaaaccatgcatgcctttctccaaagcactccattgagaatatggaactccaaaaaattggca--gagattattagaaaa |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||| || ||| ||||| | | ||| ||||||| ||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
41933385 |
agattgttggtccgtgtttgcaaaccatgcctgtcttcctccagaagaatcctttgagaaaatggatctccaaaaaattggcaaagagattgttagaaaa |
41933484 |
T |
|
| Q |
107 |
tgtcaaggattgcctttagcagcacaatcacttgggggcttattgcgaagtaaacgtgacatcaaggattggaataatatactaactagtaccatt |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||| || ||||||||| ||||| |||| |
|
|
| T |
41933485 |
tgtcagggattgcctttagcagcacaatcacttgggggcttgttgcgaagtaaacgtaacctcaaggactgggatgatatactaaatagtaacatt |
41933580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 34802620 - 34802436
Alignment:
| Q |
9 |
agattgttggtctgtgtttgcaaaccatgcatgcctttctccaaagcactccattgagaatatggaactccaaaaaattggca--gagattattagaaaa |
106 |
Q |
| |
|
|||||||||||| || || |||||||||||||| ||||||||| | | || |||||||||||| |||||||| | || |||||| |||||||| |
|
|
| T |
34802620 |
agattgttggtcagttttcgcaaaccatgcatgtctttctccagaaaaatcttctgagaatatggatatccaaaaatacgccaaggagattgttagaaaa |
34802521 |
T |
|
| Q |
107 |
tgtcaaggattgcctttagcagcacaatcacttgggggcttattgcgaagtaaacgtgacatcaaggattggaataatatactaa |
191 |
Q |
| |
|
|| | ||| |||||||||||||||||||||| ||||| || |||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34802520 |
tgcaagggactgcctttagcagcacaatcactcgggggtttgttgcgaggtaaacgtgacatcagggattggaataatatactaa |
34802436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 6059870 - 6059842
Alignment:
| Q |
113 |
ggattgcctttagcagcacaatcacttgg |
141 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6059870 |
ggattgcctttagcagcacaatcacttgg |
6059842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University