View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20519_low_69 (Length: 219)

Name: NF20519_low_69
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20519_low_69
NF20519_low_69
[»] chr1 (1 HSPs)
chr1 (16-171)||(46851808-46851966)
[»] chr4 (1 HSPs)
chr4 (130-166)||(14011125-14011161)
[»] chr7 (2 HSPs)
chr7 (132-166)||(28691972-28692006)
chr7 (134-166)||(753362-753394)
[»] chr5 (3 HSPs)
chr5 (132-166)||(1084249-1084283)
chr5 (130-166)||(13508438-13508474)
chr5 (130-166)||(21782697-21782733)
[»] chr6 (4 HSPs)
chr6 (129-166)||(32408821-32408858)
chr6 (126-166)||(7268057-7268097)
chr6 (138-166)||(8010256-8010284)
chr6 (135-167)||(31969594-31969626)
[»] chr3 (2 HSPs)
chr3 (129-166)||(37308223-37308260)
chr3 (130-166)||(24235826-24235862)
[»] chr8 (2 HSPs)
chr8 (123-159)||(8194103-8194139)
chr8 (141-169)||(11569602-11569630)
[»] chr2 (1 HSPs)
chr2 (133-165)||(29316934-29316966)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 46851808 - 46851966
Alignment:
Q  16 atacctatgtttttctcgc---tgttaagaacttcaaaaatttaacaaggtttttctttcttagtgattaatgaatgcacaatgcagtaaccagtttcgc 112  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  46851808 atacctatgtttttctcgccgctgttaagaacttcaaaaatttaacaaggattttctttcttagtgattaataaatgcacaatgcagtaaccagtttcgc 46851907  T
Q  113 tagtaatatcgtattaaggccctgttttgataaacaacttaattaagtgtttattatta 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46851908 tagtaatatcgtattaaggccctgttttgataaacaacttaattaactgtttattatta 46851966  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 14011125 - 14011161
Alignment:
Q  130 ggccctgttttgataaacaacttaattaagtgtttat 166  Q
    |||||||||| ||||||||||||||||||||||||||    
T  14011125 ggccctgtttggataaacaacttaattaagtgtttat 14011161  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 28692006 - 28691972
Alignment:
Q  132 ccctgttttgataaacaacttaattaagtgtttat 166  Q
    |||||||| ||||||||||||||||||||||||||    
T  28692006 ccctgtttggataaacaacttaattaagtgtttat 28691972  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 753394 - 753362
Alignment:
Q  134 ctgttttgataaacaacttaattaagtgtttat 166  Q
    |||||| ||||||||||||||||||||||||||    
T  753394 ctgtttggataaacaacttaattaagtgtttat 753362  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 166
Target Start/End: Complemental strand, 1084283 - 1084249
Alignment:
Q  132 ccctgttttgataaacaacttaattaagtgtttat 166  Q
    |||||||| ||||||||||||||||||||||||||    
T  1084283 ccctgtttggataaacaacttaattaagtgtttat 1084249  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 13508438 - 13508474
Alignment:
Q  130 ggccctgttttgataaacaacttaattaagtgtttat 166  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  13508438 ggccatgtttggataaacaacttaattaagtgtttat 13508474  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 21782733 - 21782697
Alignment:
Q  130 ggccctgttttgataaacaacttaattaagtgtttat 166  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  21782733 ggccatgtttggataaacaacttaattaagtgtttat 21782697  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 166
Target Start/End: Original strand, 32408821 - 32408858
Alignment:
Q  129 aggccctgttttgataaacaacttaattaagtgtttat 166  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  32408821 aggccatgtttcgataaacaacttaattaagtgtttat 32408858  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 7268097 - 7268057
Alignment:
Q  126 ttaaggccctgttttgataaacaacttaattaagtgtttat 166  Q
    ||||| ||||| || ||||||||||||||||||||||||||    
T  7268097 ttaagaccctgcttggataaacaacttaattaagtgtttat 7268057  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 8010256 - 8010284
Alignment:
Q  138 tttgataaacaacttaattaagtgtttat 166  Q
    |||||||||||||||||||||||||||||    
T  8010256 tttgataaacaacttaattaagtgtttat 8010284  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 31969626 - 31969594
Alignment:
Q  135 tgttttgataaacaacttaattaagtgtttatt 167  Q
    ||||||||||||||||||||||||||| |||||    
T  31969626 tgttttgataaacaacttaattaagtggttatt 31969594  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 37308260 - 37308223
Alignment:
Q  129 aggccctgttttgataaacaacttaattaagtgtttat 166  Q
    ||||||||||| ||||||||||||||||||||| ||||    
T  37308260 aggccctgtttggataaacaacttaattaagtgcttat 37308223  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 24235862 - 24235826
Alignment:
Q  130 ggccctgttttgataaacaacttaattaagtgtttat 166  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  24235862 ggccttgtttggataaacaacttaattaagtgtttat 24235826  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 8194139 - 8194103
Alignment:
Q  123 gtattaaggccctgttttgataaacaacttaattaag 159  Q
    |||||| |||||||||| |||||||||||||||||||    
T  8194139 gtattatggccctgtttagataaacaacttaattaag 8194103  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 11569630 - 11569602
Alignment:
Q  141 gataaacaacttaattaagtgtttattat 169  Q
    |||||||||||||||||||||||||||||    
T  11569630 gataaacaacttaattaagtgtttattat 11569602  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 29316966 - 29316934
Alignment:
Q  133 cctgttttgataaacaacttaattaagtgttta 165  Q
    ||||||| |||||||||||||||||||||||||    
T  29316966 cctgtttggataaacaacttaattaagtgttta 29316934  T

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