View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20519_low_71 (Length: 208)
Name: NF20519_low_71
Description: NF20519
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20519_low_71 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 33597668 - 33597489
Alignment:
| Q |
16 |
gaatataagcaatgtgacgtagtaaccacatgaatgaaataaattactaagcagatgctttgccaaatggaaaacgtaacgaaatcgataaagaatcaaa |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
33597668 |
gaatataagcaacgtgacgtagtaaccacatgaatgaaataaattactaagcagatgctttgacaaatggaaaacgtaacgaaatcgataaagtatcaaa |
33597569 |
T |
|
| Q |
116 |
ttaaaacatgaatgtgactatttctataatgaagttcaagatagtatgtagtacatgaaactctaaaaaatgttggaact |
195 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33597568 |
ttaaagcatgaatgtgactatttctataatgaaattcaagatagtatgtagtacatgaaactctaaaaaatgttggaact |
33597489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 56 - 195
Target Start/End: Complemental strand, 33630234 - 33630095
Alignment:
| Q |
56 |
aaattactaagcagatgctttgccaaatggaaaacgtaacgaaatcgataaagaatcaaattaaaacatgaatgtgactatttctataatgaagttcaag |
155 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||||||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33630234 |
aaattactatgcaaatgctttaccaaatggaaaacgtaacgaaattgatcaagaatccaattaaagcatgaatgtgactatttctataatgaagttcaag |
33630135 |
T |
|
| Q |
156 |
atagtatgtagtacatgaaactctaaaaaatgttggaact |
195 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33630134 |
atagtatgtagtacctgaaactctaaaaaatgttggaact |
33630095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University