View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2051_high_4 (Length: 276)

Name: NF2051_high_4
Description: NF2051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2051_high_4
NF2051_high_4
[»] scaffold0312 (1 HSPs)
scaffold0312 (12-260)||(10359-10608)
[»] chr1 (14 HSPs)
chr1 (12-260)||(419963-420212)
chr1 (13-260)||(974950-975198)
chr1 (45-167)||(936173-936296)
chr1 (107-234)||(924022-924149)
chr1 (116-246)||(960123-960259)
chr1 (189-246)||(942241-942298)
chr1 (189-246)||(949230-949287)
chr1 (189-246)||(971511-971568)
chr1 (116-150)||(942174-942208)
chr1 (116-150)||(971444-971478)
chr1 (116-148)||(949151-949183)
chr1 (106-229)||(901772-901895)
chr1 (106-157)||(909488-909539)
chr1 (107-234)||(915980-916098)


Alignment Details
Target: scaffold0312 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 10359 - 10608
Alignment:
Q  12 atgaatgttggagttggacgttctccatttagttacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcactcnnnnnnn-ggaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||    
T  10359 atgaatgttggagttggacgttctccatttagttacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcactcttctttttggaaa 10458  T
Q  111 aggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaataccctt 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  10459 aggacttgcatcatggaacaaaactgaacttgcaattcactaagaccacttcaaatgcggcaacattcttgccgcgccaagttgctaattcaataccttt 10558  T
Q  211 ttcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaag 260  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10559 ttcattaaacaaggtggaatacataatcaacaagttaaacatcaagaaag 10608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 260
Target Start/End: Complemental strand, 420212 - 419963
Alignment:
Q  12 atgaatgttggagttggacgttctccatttagttacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcactcnnnnnnn-ggaaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||    
T  420212 atgaatgttggagttggacgttctccatttagttacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcactcttctttttggaaa 420113  T
Q  111 aggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaataccctt 210  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||    
T  420112 aggacttgcatcatggaacaaaactgaacttgcaattcactaagaccacttcaaatgcggcaacattcttgccgcgccaagttgctaattcaataccttt 420013  T
Q  211 ttcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaag 260  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  420012 ttcattaaacaaggtggaatacataatcaacaagttaaacatcaagaaag 419963  T

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Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 974950 - 975198
Alignment:
Q  13 tgaatgttggagttggacgttctccatttagttacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcactcnnnnnnn-ggaaaa 111  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||        ||||||    
T  974950 tgaatgttggagttggacgttctccatttatttataattatgctgcaagtgagactcaattacatgataaaccaaatgtagcactcttctttctggaaaa 975049  T
Q  112 ggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaatacccttt 211  Q
    |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  975050 ggacctgcatcatggaacaaaactgaacttgcaattctctaagaccacttcaaatgcagccacattcttgccgcgccaagttgctaattcaatacccttt 975149  T
Q  212 tcatcaaacaaggtggaatacataatcaacaagttaaacatcaagaaag 260  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  975150 tcatcaaacaagatggaatacataatcaacaagttaaacatcaagaaag 975198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 167
Target Start/End: Original strand, 936173 - 936296
Alignment:
Q  45 tacaattatgctgcaagtgagactcagttacatgataaaccaaatgtagcac-tcnnnnnnnggaaaaggacttgcatcatggaacaaaattgaacttgc 143  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||| |         |||||||| |||||||| |||||||| ||||||||||    
T  936173 tacaattatgctgcaagtgaaacacagttacatgataaaccaaatgtagcacttttcttcttagaaaaggatttgcatcaaggaacaaagttgaacttgc 936272  T
Q  144 aattcactaagaccacttcaaatg 167  Q
    ||||||| || |||| ||||||||    
T  936273 aattcacaaaaaccaattcaaatg 936296  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 924022 - 924149
Alignment:
Q  107 gaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaatac 206  Q
    ||||||||||||||| |||| |||||||||||| |||||||||| |||||| |     |||  || ||||||||||| ||  ||||||||||||| ||||    
T  924022 gaaaaggacttgcataatggtacaaaattgaacatgcaattcacaaagacctcagattatggagcaacattcttgcctcgtgaagttgctaattccatac 924121  T
Q  207 ccttttcatcaaacaaggtggaatacat 234  Q
    | |||||||||||||| |||||| ||||    
T  924122 cattttcatcaaacaaagtggaaaacat 924149  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 246
Target Start/End: Original strand, 960123 - 960259
Alignment:
Q  116 ttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaat------gcggccacattcttgccgcgccaagttgctaattcaataccct 209  Q
    ||||||||||||||||||||||||||||||||||   |||| |||||||||      |   | | |||||||||  |  ||||||||||||| |||||||    
T  960123 ttgcatcatggaacaaaattgaacttgcaattcaaagagacaacttcaaataataatggaacaaaattcttgcctagagaagttgctaattccataccct 960222  T
Q  210 tttcatcaaacaaggtggaatacataatcaacaagtt 246  Q
    |||||||||||||  ||||| ||||| ||||||||||    
T  960223 tttcatcaaacaaaatggaaaacatactcaacaagtt 960259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 942241 - 942298
Alignment:
Q  189 aagttgctaattcaatacccttttcatcaaacaaggtggaatacataatcaacaagtt 246  Q
    ||||||||||||| ||||||||||||||||||||  ||||| ||||| ||||||||||    
T  942241 aagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagtt 942298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 949230 - 949287
Alignment:
Q  189 aagttgctaattcaatacccttttcatcaaacaaggtggaatacataatcaacaagtt 246  Q
    ||||||||||||| ||||||||||||||||||||  ||||| ||||| ||||||||||    
T  949230 aagttgctaattccatacccttttcatcaaacaaattggaaaacatactcaacaagtt 949287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 971511 - 971568
Alignment:
Q  189 aagttgctaattcaatacccttttcatcaaacaaggtggaatacataatcaacaagtt 246  Q
    ||||||||||||| ||||||||||||||||||||  ||||| ||||| ||||||||||    
T  971511 aagttgctaattccatacccttttcatcaaacaaaatggaaaacatactcaacaagtt 971568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 942174 - 942208
Alignment:
Q  116 ttgcatcatggaacaaaattgaacttgcaattcac 150  Q
    |||||||||||||||||||||||||||||||||||    
T  942174 ttgcatcatggaacaaaattgaacttgcaattcac 942208  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 150
Target Start/End: Original strand, 971444 - 971478
Alignment:
Q  116 ttgcatcatggaacaaaattgaacttgcaattcac 150  Q
    |||||||||||||||||||||||||||||||||||    
T  971444 ttgcatcatggaacaaaattgaacttgcaattcac 971478  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 949151 - 949183
Alignment:
Q  116 ttgcatcatggaacaaaattgaacttgcaattc 148  Q
    |||||||||||||||||||||||||||||||||    
T  949151 ttgcatcatggaacaaaattgaacttgcaattc 949183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 229
Target Start/End: Original strand, 901772 - 901895
Alignment:
Q  106 ggaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaata 205  Q
    |||||| |||||||||| ||| |||||||||||| |||||||||  |||||| |     |||  |  ||||| ||||| ||  ||||||||||||| ||     
T  901772 ggaaaaagacttgcatcttggtacaaaattgaacatgcaattcaaaaagacctcaaattatgaagtaacatttttgcctcgtgaagttgctaattccatt 901871  T
Q  206 cccttttcatcaaacaaggtggaa 229  Q
    ||||||||||||||||| ||||||    
T  901872 cccttttcatcaaacaaagtggaa 901895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 157
Target Start/End: Original strand, 909488 - 909539
Alignment:
Q  106 ggaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagacc 157  Q
    ||||||||||||||||||||| |||||||| ||| | |||||||| ||||||    
T  909488 ggaaaaggacttgcatcatggtacaaaattcaacatacaattcacaaagacc 909539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 915980 - 916098
Alignment:
Q  107 gaaaaggacttgcatcatggaacaaaattgaacttgcaattcactaagaccacttcaaatgcggccacattcttgccgcgccaagttgctaattcaatac 206  Q
    ||||||||||||||  |||| |||||||||||| |||||||||| ||||||         |  || ||||||||||| ||  |||| |||||||| ||||    
T  915980 gaaaaggacttgcacaatggtacaaaattgaacatgcaattcacaaagacc---------ggagcaacattcttgcctcgtgaagtcgctaattccatac 916070  T
Q  207 ccttttcatcaaacaaggtggaatacat 234  Q
    | |||||||||||||| |||||| ||||    
T  916071 cattttcatcaaacaaagtggaaaacat 916098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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