View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2051_low_11 (Length: 248)

Name: NF2051_low_11
Description: NF2051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2051_low_11
NF2051_low_11
[»] chr3 (10 HSPs)
chr3 (1-248)||(47527669-47527916)
chr3 (5-248)||(47527801-47528044)
chr3 (5-117)||(47527599-47527714)
chr3 (2-124)||(47527661-47527783)
chr3 (42-248)||(47522204-47522413)
chr3 (5-124)||(47522196-47522315)
chr3 (5-90)||(47528025-47528110)
chr3 (7-73)||(47527376-47527442)
chr3 (9-67)||(47549753-47549811)
chr3 (9-66)||(47522188-47522245)
[»] chr7 (6 HSPs)
chr7 (10-247)||(44871846-44872086)
chr7 (5-248)||(44872042-44872285)
chr7 (2-120)||(44871970-44872091)
chr7 (157-248)||(44871861-44871952)
chr7 (2-79)||(44872171-44872248)
chr7 (16-61)||(44872251-44872296)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 47527916 - 47527669
Alignment:
Q  1 actactgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47527916 actaatgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaa 47527817  T
Q  101 tcgactgaaatggagacaaagaaaatcctcttgctactgatacctcggattccttcggttgcactttcagctgtaatggagatgaatatattgatattgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47527816 tcgactgaaatggagacaaagaaaatcctcttgctactgatacctcggattccttcggttgcactttcagctgtaatggagatgaatatattgatattgc 47527717  T
Q  201 tgctgcttcctcagattctctcgatcgctctttcgactgtaatggaga 248  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  47527716 tgctgcttcctcagattctctcagtcgctctttcgactgtaatggaga 47527669  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 248
Target Start/End: Complemental strand, 47528044 - 47527801
Alignment:
Q  5 ctgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaatcga 104  Q
    ||||||| ||||||||||||  ||||||||| | |||||||||| ||||| |||||  ||||||||||||||| ||  || ||| |||||||||  ||||    
T  47528044 ctgcttcatcagattctctccattgctcttttatctgtaatggaaacgaataaattaatgttgctgctgcttcctcgcattctcgcagtcgctctttcga 47527945  T
Q  105 ctgaaatggagacaaagaaaatcctcttgctactgatacctcggattccttcggttgcactttcagctgtaatggagatgaatatattgatattgctgct 204  Q
    ||| |||||||||||  ||||| ||||| ||| || | |||| |||||  |||||||| |||||| |||||||||||| ||| | |||| | ||||||||    
T  47527944 ctgtaatggagacaagtaaaatgctcttactaatgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgct 47527845  T
Q  205 gcttcctcagattctctcgatcgctctttcgactgtaatggaga 248  Q
    ||||| |||||| |||||  ||||||  ||||||| ||||||||    
T  47527844 gcttcatcagatgctctcagtcgctcaatcgactgaaatggaga 47527801  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 47527714 - 47527599
Alignment:
Q  5 ctgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgtt---gttgctgctgcttcatcagatgctctcagtcgctcaat 101  Q
    |||||||||||||||||||| || |||||||| |||||||||||||| |||||||||||   ||||||||||||||  | ||| |||||||| ||||| |    
T  47527714 ctgcttcctcagattctctcagtcgctctttcgactgtaatggagacaaagaaattgttgttgttgctgctgcttccacggattctctcagttgctcatt 47527615  T
Q  102 cgactgaaatggagac 117  Q
    |||||| |||||||||    
T  47527614 cgactgtaatggagac 47527599  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 47527783 - 47527661
Alignment:
Q  2 ctactgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaat 101  Q
    |||||| | |||| |||||  |||||||| |||||| |||||||||||| ||| | |||| | ||||||||||||| |||||| |||||||||||||  |    
T  47527783 ctactgatacctcggattccttcggttgcactttcagctgtaatggagatgaatatattgatattgctgctgcttcctcagattctctcagtcgctcttt 47527684  T
Q  102 cgactgaaatggagacaaagaaa 124  Q
    |||||| ||||||||||||||||    
T  47527683 cgactgtaatggagacaaagaaa 47527661  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 248
Target Start/End: Complemental strand, 47522413 - 47522204
Alignment:
Q  42 taatggagacgaagaaattgttgttgctgctgcttcatca---gatgctctcagtcgctcaatcgactgaaatggagacaaagaaaatcctcttgctact 138  Q
    |||||||||| |||||||||| |||||||||||||| ||    ||| ||||||||  |||  ||||| | ||||||||| || | | |  | ||||| ||    
T  47522413 taatggagacaaagaaattgtagttgctgctgcttcctcctcggattctctcagtttctctttcgacggcaatggagaccaatagattgatgttgctgct 47522314  T
Q  139 gatacctcggattccttcggttgcactttcagctgtaatggagatgaatatattgatattgctgctgcttcctcagattctctcgatcgctctttcgact 238  Q
    | | ||| ||||||  ||||| || |||||   ||||| ||||| ||||| |||||||||||||||| ||||||||||||||||| || || ||||||||    
T  47522313 gcttcctgggattctctcggtagctctttcgattgtaaaggagacgaataaattgatattgctgctgtttcctcagattctctcggtctctttttcgact 47522214  T
Q  239 gtaatggaga 248  Q
    | ||||||||    
T  47522213 gcaatggaga 47522204  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 47522315 - 47522196
Alignment:
Q  5 ctgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaatcga 104  Q
    |||||||||  |||||||||||| |||||||| | ||||| ||||||||| |||||| | ||||||||| ||| |||||| ||||| ||| ||   ||||    
T  47522315 ctgcttcctgggattctctcggtagctctttcgattgtaaaggagacgaataaattgatattgctgctgtttcctcagattctctcggtctctttttcga 47522216  T
Q  105 ctgaaatggagacaaagaaa 124  Q
    ||| |||||||||| |||||    
T  47522215 ctgcaatggagacagagaaa 47522196  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 47528110 - 47528025
Alignment:
Q  5 ctgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctc 90  Q
    |||||||||| |||||  | ||||||| ||||  |||||||||||||  |||||||||| ||| |||||||||||||||| |||||    
T  47528110 ctgcttcctcggattcatttggttgctttttcggctgtaatggagacagagaaattgtttttgatgctgcttcatcagattctctc 47528025  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 47527442 - 47527376
Alignment:
Q  7 gcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctg 73  Q
    |||||||| |||||||| ||  ||| |||| ||||| |||||||| |||||||| ||||||||||||    
T  47527442 gcttcctcggattctctaggacgctttttcgactgtgatggagacaaagaaattattgttgctgctg 47527376  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 47549811 - 47549753
Alignment:
Q  9 ttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttg 67  Q
    ||||||||||||||| ||  | |||||  ||||||||||||| ||||||||||||||||    
T  47549811 ttcctcagattctcttgggcgatcttttgactgtaatggagatgaagaaattgttgttg 47549753  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 47522245 - 47522188
Alignment:
Q  9 ttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgtt 66  Q
    |||||||||||||||||||  || |||| |||| |||||||||  |||||||||||||    
T  47522245 ttcctcagattctctcggtctctttttcgactgcaatggagacagagaaattgttgtt 47522188  T

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Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 247
Target Start/End: Original strand, 44871846 - 44872086
Alignment:
Q  10 tcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaatcgactgaa 109  Q
    |||||||||||||| |||||||||||||| |||||| |||| ||| |||||| || ||||||| |||| |  ||| || |||||| |||  ||||||| |    
T  44871846 tcctcagattctctgggttgctctttcaaatgtaattgagaagaataaattgatgctgctgcttcttccttggattctttcagtctctctttcgactgta 44871945  T
Q  110 atggagacaaagaaaatcctcttgctactgatacctcggattccttcggttgcactttcagctgtaatggagatgaatatat---tgatattgctgctgc 206  Q
    ||||||||||||||||| |||| ||||||| | ||||||||||  ||||||||||||||| |||||||||||| ||| | ||   || | ||| ||||||    
T  44871946 atggagacaaagaaaatgctctagctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgc 44872045  T
Q  207 ttcctcagattctctcgatcgctctttcgactgtaatggag 247  Q
    |||||| |||| ||||  | |||||||||||||||| ||||    
T  44872046 ttcctcggattttctcagttgctctttcgactgtaaaggag 44872086  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 248
Target Start/End: Original strand, 44872042 - 44872285
Alignment:
Q  5 ctgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcatcagatgctctcagtcgctcaatcga 104  Q
    |||||||||| |||| |||| ||||||||||| ||||||| |||| | || |||||| ||||||||||| ||| || ||| ||| | |||||||  ||||    
T  44872042 ctgcttcctcggattttctcagttgctctttcgactgtaaaggaggcaaataaattgatgttgctgctgtttcctcggattctcccggtcgctccttcga 44872141  T
Q  105 ctgaaatggagacaaagaaaatcctcttgctactgatacctcggattccttcggttgcactttcagctgtaatggagatgaatatattgatattgctgct 204  Q
    ||| |||| |||||||| |||| |||||||||||| | ||| |||||   || || |   ||||| |||||||| ||| ||| | |||| |  |||||||    
T  44872142 ctgtaatgcagacaaagtaaatgctcttgctactgcttccttggattttctctgtcgttttttcaactgtaatgcagaggaaaaaattgttgctgctgct 44872241  T
Q  205 gcttcctcagattctctcgatcgctctttcgactgtaatggaga 248  Q
    | ||| |  |||||||||||||||| |||| ||| |||||||||    
T  44872242 gtttcatgggattctctcgatcgctttttcaactctaatggaga 44872285  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 44871970 - 44872091
Alignment:
Q  2 ctactgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaat---tgttgttgctgctgcttcatcagatgctctcagtcgctc 98  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||   |||||||| ||||||||| || |||  ||||||| ||||    
T  44871970 ctactgcttcctcggattctctcggttgcactttcaactgtaatggagaagaagaaattgctgttgttgttgctgcttcctcggattttctcagttgctc 44872069  T
Q  99 aatcgactgaaatggagacaaa 120  Q
      ||||||| || |||| ||||    
T  44872070 tttcgactgtaaaggaggcaaa 44872091  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 44871861 - 44871952
Alignment:
Q  157 ggttgcactttcagctgtaatggagatgaatatattgatattgctgctgcttcctcagattctctcgatcgctctttcgactgtaatggaga 248  Q
    |||||| ||||||  |||||| |||| ||||| ||||||  ||||||| ||||||  |||||| ||  || |||||||||||||||||||||    
T  44871861 ggttgctctttcaaatgtaattgagaagaataaattgatgctgctgcttcttccttggattctttcagtctctctttcgactgtaatggaga 44871952  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 44872171 - 44872248
Alignment:
Q  2 ctactgcttcctcagattctctcggttgctctttcaactgtaatggagacgaagaaattgttgttgctgctgcttcat 79  Q
    ||||||||||||  |||| |||| || | | |||||||||||||| ||| ||| ||||||||| |||||||| |||||    
T  44872171 ctactgcttccttggattttctctgtcgttttttcaactgtaatgcagaggaaaaaattgttgctgctgctgtttcat 44872248  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 44872251 - 44872296
Alignment:
Q  16 gattctctcggttgctctttcaactgtaatggagacgaagaaattg 61  Q
    |||||||||| | ||| |||||||| ||||||||||||||||||||    
T  44872251 gattctctcgatcgctttttcaactctaatggagacgaagaaattg 44872296  T

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