View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2051_low_3 (Length: 368)
Name: NF2051_low_3
Description: NF2051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2051_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 9 - 366
Target Start/End: Complemental strand, 710915 - 710554
Alignment:
| Q |
9 |
gacatcatcacaagaaacacaatgaggtaatcttaatcaatatttacatgcatgttggtagaacacacatttaattaatctcctttgaaaaatgttacct |
108 |
Q |
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| T |
710915 |
gacaccatgacaagaaacacaatgaggtaatcttaatcaatatttacatgcatgttggtagaacacacatttaattaatctcctttgaaaaatgttacct |
710816 |
T |
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| Q |
109 |
atcattcaatctaaacaagnnnnnnnnnnnnnnnn-tcattacatttcatataattaataaacttatcacaatacttttactagaaaaagttgaatctcc |
207 |
Q |
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| T |
710815 |
atcattcaatctaaacaagaaaaaaaaataaaaaaatcattacatttcatataattaataaacttatcacaatacttttactagaaaaagttgaatctcc |
710716 |
T |
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| Q |
208 |
aaaccaaaataaaataaaatatgtgtatagtttcatctgtgagtattatagaaacatcaaaacgagagtcatgcaaatgcaaatggtataagtttgcaga |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
710715 |
aaaccaaaataaaataaaatatgtgtatagtttcatctgggagtattatagaaacatcaaaacgagagtcatgcaagtgcaaatggtataagtttgcaga |
710616 |
T |
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| Q |
308 |
aac---atttgatgtgctgggatgtggatttgtagcgtgatacccctcttcttctcactcga |
366 |
Q |
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| T |
710615 |
gacattatttgatgtgctgggatgtggatttgtagcgtgatacccctcttcttcacactcga |
710554 |
T |
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