View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2051_low_4 (Length: 333)
Name: NF2051_low_4
Description: NF2051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2051_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 330286 - 330526
Alignment:
| Q |
1 |
acctaagagcacttaagccacgaggctctcctacctaatgaactagtttttggtttgggctcacgggcttaactcttaacaaattactgacaccatatgc |
100 |
Q |
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| T |
330286 |
acctaagagcacttaagccacgaggctctcctacctaatgagctagtttttgatttgggctcacgggcttaactcttaacaaattactgacatcatatgc |
330385 |
T |
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| Q |
101 |
gacgacgccaaatatatttgtttctatcttacttcacccggtctcatctcatatataagnnnnnnnnnntcatattttaaattcattgaataataaataa |
200 |
Q |
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| T |
330386 |
gacgacgcctaatatatttgtttctatcttacttcatccggtctcatctcatatatatg--aaaaaaaatcatattttaaattcattgaataataaataa |
330483 |
T |
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| Q |
201 |
atgtatttgatatatagaccatatacatgagatgagagataat |
243 |
Q |
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| T |
330484 |
atgtatttgatatatagaccatatacatgagatgagagataat |
330526 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 37223591 - 37223635
Alignment:
| Q |
11 |
acttaagccacgaggctctcctacctaatgaactagtttttggtt |
55 |
Q |
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|||||||||| ||||||||| |||||||| |||||||||||||| |
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| T |
37223591 |
acttaagccattaggctctcccacctaatggactagtttttggtt |
37223635 |
T |
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