View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2051_low_9 (Length: 264)

Name: NF2051_low_9
Description: NF2051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2051_low_9
NF2051_low_9
[»] chr3 (26 HSPs)
chr3 (81-253)||(6733227-6733399)
chr3 (103-253)||(6944627-6944777)
chr3 (81-253)||(7585018-7585194)
chr3 (40-253)||(6557019-6557226)
chr3 (104-253)||(6782633-6782782)
chr3 (43-175)||(6410321-6410453)
chr3 (103-253)||(6941514-6941664)
chr3 (163-253)||(6944906-6944996)
chr3 (185-253)||(6523909-6523977)
chr3 (182-253)||(7585293-7585364)
chr3 (197-253)||(7585543-7585599)
chr3 (197-253)||(6523790-6523846)
chr3 (197-253)||(6530831-6530887)
chr3 (197-253)||(6841879-6841935)
chr3 (197-248)||(5247849-5247900)
chr3 (197-252)||(8571251-8571306)
chr3 (197-239)||(6242989-6243031)
chr3 (87-155)||(6785020-6785086)
chr3 (200-248)||(6880191-6880239)
chr3 (197-252)||(4391215-4391270)
chr3 (197-252)||(5265754-5265809)
chr3 (43-82)||(6782809-6782848)
chr3 (197-239)||(5278337-5278379)
chr3 (200-248)||(6897763-6897811)
chr3 (197-229)||(6914773-6914805)
chr3 (43-82)||(6944561-6944601)
[»] scaffold0425 (1 HSPs)
scaffold0425 (163-253)||(10067-10157)
[»] scaffold2053 (1 HSPs)
scaffold2053 (162-247)||(563-648)
[»] chr7 (1 HSPs)
chr7 (197-238)||(6575639-6575680)


Alignment Details
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 6733227 - 6733399
Alignment:
Q  81 ttgatgcaattgtttggttaagaatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgcc 180  Q
    ||||| |||| ||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6733227 ttgattcaatagtttggttaagaatatatgttcgtaccttccaaaccaaaaagatttgaccaaacgtgggacccataacatctcattcctgcttaatgcc 6733326  T
Q  181 atcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6733327 atcaatccacacattcgggatgtgactaattgtatgccaacgctctcctccctccttttcatacttctccttt 6733399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 6944627 - 6944777
Alignment:
Q  103 aatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgccatcaatccacacattcgggatg 202  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||    
T  6944627 aatatatgttcgtaccttccaaaccaaaaaggtttgaccaaaagtgggacccataacatctcattcctgtttaatgcgatcaatccacacactcgggatg 6944726  T
Q  203 tgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6944727 tgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 6944777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 81 - 253
Target Start/End: Original strand, 7585018 - 7585194
Alignment:
Q  81 ttgatgcaattgtttggttaagaatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgcc 180  Q
    ||||| |||| ||||||||||||||||||||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||  |    
T  7585018 ttgattcaatagtttggttaagaatatatgttcgtaccttccaaaccaaaaagatttgaccaaatgtgggacccataacatctcattcctgcttaatttc 7585117  T
Q  181 atc----aatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||    ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  7585118 atcaattaatccacacattcgggatgtgagtaattgtatgccaacgctctcctccctccttttcatacttctccttt 7585194  T

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Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 253
Target Start/End: Complemental strand, 6557226 - 6557019
Alignment:
Q  40 agggaagccagaaaataagaatataaaattaagaaaataaattgatgcaattgtttggttaagaata-----tatgtttgtaccttccgaaccaaaaagg 134  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     |||||| |||||||| ||||||          
T  6557226 agggaagccagaaaaaaagaatataaaattaagaaaataaattgatgcaattgtttggttaagaatagaatatatgttcgtaccttcagaacca------ 6557133  T
Q  135 tttgaccaaacgtgggacccataacatctcattcctgcttaatgccatcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctc 234  Q
         ||||| |||||||||||||||||||||| ||| | |||    |||||||||||||  |||||||||| |||||||||||||||||||||||||||    
T  6557132 -----ccaaaagtgggacccataacatctcatttctgttgaatatagtcaatccacacataagggatgtgactaattgtatgccaacgctctcctccctc 6557038  T
Q  235 cttttcatacttctccttt 253  Q
    |||||||||||||||||||    
T  6557037 cttttcatacttctccttt 6557019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 104 - 253
Target Start/End: Complemental strand, 6782782 - 6782633
Alignment:
Q  104 atatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgccatcaatccacacattcgggatgt 203  Q
    ||||||||| |||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||| || |||| || |||||| |||||   |||||||    
T  6782782 atatatgttcgtacattcagaaccaaaaaggtttgaccaaaagtgggacccataacttctcattccggcctaattccgtcaatcaacacacgagggatgt 6782683  T
Q  204 gacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6782682 gacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 6782633  T

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Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 6410453 - 6410321
Alignment:
Q  43 gaagccagaaaataagaatataaaattaagaaaataaattgatgcaattgtttggttaagaatatatgtttgtaccttccgaaccaaaaaggtttgacca 142  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||| || ||  ||||| ||||||||| |||||||||||||||||||| ||||||||    
T  6410453 gaagtcagaaaataagaatataaaattcagaaaataaattgatgcaagtgctttattaagtatatatgttcgtaccttccgaaccaaaaagatttgacca 6410354  T
Q  143 aacgtgggacccataacatctcattcctgctta 175  Q
    || ||||||||||||||||||||||||||||||    
T  6410353 aaagtgggacccataacatctcattcctgctta 6410321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 103 - 253
Target Start/End: Original strand, 6941514 - 6941664
Alignment:
Q  103 aatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggacccataacatctcattcctgcttaatgccatcaatccacacattcgggatg 202  Q
    ||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | ||||   |||||   |||  | ||||||    
T  6941514 aatatttgttcgtaccttccgaaccaaaaagatttgaccaaaagtgggacccataacatctcattcctgttcaatgaggtcaattgtcaccatagggatg 6941613  T
Q  203 tgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6941614 tgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 6941664  T

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Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 163 - 253
Target Start/End: Original strand, 6944906 - 6944996
Alignment:
Q  163 tcattcctgcttaatgccatcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||||||| || |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6944906 tcattccttctaaatgtcgtcaatccacacattcgggatgtgactaattgtatgccaacgctctcctccctccttttcatacttctccttt 6944996  T

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Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 6523977 - 6523909
Alignment:
Q  185 atccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  6523977 atccacacattcgggatgtgagtaattgtatgccaacgctctcctccctccttttcatacttctccttt 6523909  T

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Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 7585293 - 7585364
Alignment:
Q  182 tcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  7585293 tcaatcctcacattcgggatgtgactaattgtatgccaacactctcctccctccttttcatacttctccttt 7585364  T

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Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 7585543 - 7585599
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7585543 gggatgtgactaattgtatgccaacgctctcctccctccttttcatacttctccttt 7585599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 6523846 - 6523790
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  6523846 gggatgtgactaattgtatgccaaagctctcctccctccttttcatacttctccttt 6523790  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 6530887 - 6530831
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  6530887 gggatgtgaccaattgtatgccaacgctctcgtccctccttttcatacttctccttt 6530831  T

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Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 6841935 - 6841879
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  6841935 gggatgtgactaattgtgtgccaacgctctcctccctccttttcatacttctccttt 6841879  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 5247849 - 5247900
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttct 248  Q
    |||||||||| |||||||||||||| |||||||||||||||||  |||||||    
T  5247849 gggatgtgacgaattgtatgccaacactctcctccctccttttggtacttct 5247900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 8571306 - 8571251
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctcctt 252  Q
    |||||||||| ||||||||||||||| |||||| ||| ||||| ||||||||||||    
T  8571306 gggatgtgacgaattgtatgccaacgttctccttccttcttttgatacttctcctt 8571251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 6242989 - 6243031
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctcctttt 239  Q
    |||||||||||||||||||||||||||||||||  ||||||||    
T  6242989 gggatgtgacaaattgtatgccaacgctctccttgctcctttt 6243031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 6785086 - 6785020
Alignment:
Q  87 caattgtttggttaagaatatatgtttgtaccttccgaaccaaaaaggtttgaccaaacgtgggaccca 155  Q
    |||| ||||||||||||||||  |||  |||||||| |||||||||| ||||||||||| |||||||||    
T  6785086 caatggtttggttaagaatat--gttcataccttccaaaccaaaaagatttgaccaaacatgggaccca 6785020  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 6880191 - 6880239
Alignment:
Q  200 atgtgacaaattgtatgccaacgctctcctccctccttttcatacttct 248  Q
    ||||||| |||||||||||||||||||||| |||||||||  |||||||    
T  6880191 atgtgactaattgtatgccaacgctctccttcctccttttggtacttct 6880239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 252
Target Start/End: Complemental strand, 4391270 - 4391215
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctcctt 252  Q
    ||||||||||||||||||||||| | ||||||| |||||||||  |||| ||||||    
T  4391270 gggatgtgacaaattgtatgccagcactctccttcctccttttggtactgctcctt 4391215  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 5265754 - 5265809
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctcctt 252  Q
    ||||| |||||||| |||||||||||||||||| |||||||||  |||| ||||||    
T  5265754 gggatatgacaaatcgtatgccaacgctctccttcctccttttggtactgctcctt 5265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 6782848 - 6782809
Alignment:
Q  43 gaagccagaaaataagaatataaaattaagaaaataaatt 82  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  6782848 gaagccaataaataagaatataaaattaagaaaataaatt 6782809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 5278337 - 5278379
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctcctttt 239  Q
    ||||||||||||||||||| ||||| ||||||| |||||||||    
T  5278337 gggatgtgacaaattgtattccaactctctccttcctcctttt 5278379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 6897763 - 6897811
Alignment:
Q  200 atgtgacaaattgtatgccaacgctctcctccctccttttcatacttct 248  Q
    ||||||| |||||||||||||| ||||||| |||||||||  |||||||    
T  6897763 atgtgactaattgtatgccaacactctccttcctccttttggtacttct 6897811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 6914773 - 6914805
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcct 229  Q
    ||||||||||||||| |||||||||||||||||    
T  6914773 gggatgtgacaaattctatgccaacgctctcct 6914805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 82
Target Start/End: Original strand, 6944561 - 6944601
Alignment:
Q  43 gaagccagaaaataagaatataaaa-ttaagaaaataaatt 82  Q
    |||| |||||||||||||||||||| |||||||||||||||    
T  6944561 gaagtcagaaaataagaatataaaatttaagaaaataaatt 6944601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 10157 - 10067
Alignment:
Q  163 tcattcctgcttaatgccatcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttctccttt 253  Q
    ||||||||||||||||   ||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  10157 tcattcctgcttaatgttgtcaatgcacacattcgggatgtgactaattgtatgccaaagctctcctccctccttttcatacttctccttt 10067  T

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Target: scaffold2053 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold2053
Description:

Target: scaffold2053; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 648 - 563
Alignment:
Q  162 ctcattcctgcttaatgccatcaatccacacattcgggatgtgacaaattgtatgccaacgctctcctccctccttttcatacttc 247  Q
    |||||| ||||| ||| || ||||||  |||||  |||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  648 ctcatttctgctcaattccgtcaatcgtcacatgagggatgtgactaattgtatgccaattctctcctccctccttttcatacttc 563  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 6575680 - 6575639
Alignment:
Q  197 gggatgtgacaaattgtatgccaacgctctcctccctccttt 238  Q
    ||||| |||| ||||||||||||||| |||||||||||||||    
T  6575680 gggatttgacgaattgtatgccaacgatctcctccctccttt 6575639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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