View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20520_high_1 (Length: 689)

Name: NF20520_high_1
Description: NF20520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20520_high_1
NF20520_high_1
[»] chr6 (95 HSPs)
chr6 (28-679)||(28096744-28097395)
chr6 (235-632)||(29827263-29827669)
chr6 (218-459)||(28150631-28150872)
chr6 (270-632)||(29842526-29842897)
chr6 (236-670)||(28140774-28141217)
chr6 (258-539)||(2186196-2186474)
chr6 (388-539)||(28244165-28244316)
chr6 (237-362)||(29469759-29469884)
chr6 (232-363)||(29673514-29673645)
chr6 (436-670)||(28326717-28326951)
chr6 (436-670)||(28504353-28504587)
chr6 (451-568)||(27704978-27705095)
chr6 (478-650)||(27697337-27697509)
chr6 (239-332)||(28327064-28327157)
chr6 (239-332)||(28504700-28504793)
chr6 (385-537)||(27603362-27603514)
chr6 (436-568)||(27680291-27680423)
chr6 (463-539)||(28296476-28296552)
chr6 (463-539)||(28515521-28515597)
chr6 (238-361)||(26624816-26624939)
chr6 (238-361)||(26730793-26730916)
chr6 (237-364)||(28296241-28296368)
chr6 (237-364)||(28515705-28515832)
chr6 (484-542)||(28240720-28240778)
chr6 (388-537)||(26885439-26885588)
chr6 (238-363)||(26960677-26960802)
chr6 (238-363)||(27680514-27680639)
chr6 (246-362)||(25075432-25075548)
chr6 (229-361)||(25581273-25581405)
chr6 (306-362)||(26850277-26850333)
chr6 (275-363)||(27529849-27529937)
chr6 (238-362)||(27591520-27591644)
chr6 (291-363)||(27697147-27697219)
chr6 (29-105)||(28151004-28151080)
chr6 (291-363)||(28787805-28787877)
chr6 (291-363)||(28793926-28793998)
chr6 (306-357)||(26938581-26938632)
chr6 (470-537)||(27215824-27215891)
chr6 (237-364)||(28186954-28187081)
chr6 (237-364)||(28244349-28244476)
chr6 (277-363)||(26885634-26885720)
chr6 (238-355)||(26804018-26804135)
chr6 (238-363)||(26863123-26863248)
chr6 (277-362)||(27676158-27676243)
chr6 (286-359)||(29694945-29695018)
chr6 (286-363)||(29759005-29759082)
chr6 (307-363)||(26144417-26144473)
chr6 (246-362)||(26637193-26637309)
chr6 (246-362)||(26743159-26743275)
chr6 (286-362)||(26813102-26813178)
chr6 (402-670)||(28186633-28186901)
chr6 (478-537)||(26647851-26647910)
chr6 (478-537)||(26753819-26753878)
chr6 (478-537)||(26803818-26803877)
chr6 (228-363)||(26951295-26951430)
chr6 (478-545)||(29727701-29727768)
chr6 (478-537)||(31285931-31285990)
chr6 (298-357)||(31286114-31286173)
chr6 (478-568)||(27426363-27426453)
chr6 (470-568)||(27530047-27530145)
chr6 (472-650)||(27609865-27610043)
chr6 (303-361)||(28902153-28902211)
chr6 (258-363)||(25484608-25484713)
chr6 (470-539)||(29469582-29469651)
chr6 (301-358)||(29727524-29727581)
chr6 (275-359)||(25491849-25491933)
chr6 (323-363)||(25512440-25512480)
chr6 (307-363)||(25546532-25546588)
chr6 (470-518)||(25581113-25581161)
chr6 (307-363)||(26057471-26057527)
chr6 (307-363)||(26077441-26077497)
chr6 (275-359)||(26978936-26979020)
chr6 (237-357)||(27216007-27216127)
chr6 (480-568)||(27717252-27717340)
chr6 (31-67)||(29758010-29758046)
chr6 (470-513)||(25484455-25484498)
chr6 (470-513)||(25512287-25512330)
chr6 (470-513)||(26057318-26057361)
chr6 (470-513)||(26077288-26077331)
chr6 (291-362)||(27603253-27603324)
chr6 (286-361)||(28490046-28490121)
chr6 (286-361)||(29802456-29802531)
chr6 (277-363)||(26657526-26657612)
chr6 (277-363)||(26763497-26763583)
chr6 (306-356)||(27609693-27609743)
chr6 (306-356)||(27717072-27717122)
chr6 (600-670)||(28296613-28296683)
chr6 (604-670)||(28515390-28515456)
chr6 (478-544)||(29673760-29673826)
chr6 (476-513)||(26144264-26144301)
chr6 (479-512)||(26825216-26825249)
chr6 (306-363)||(27704836-27704893)
chr6 (465-510)||(28490225-28490270)
chr6 (478-539)||(29759197-29759258)
chr6 (465-510)||(29802635-29802680)
[»] chr2 (3 HSPs)
chr2 (160-679)||(3280889-3281410)
chr2 (28-91)||(3281493-3281556)
chr2 (286-355)||(17991753-17991822)
[»] chr5 (2 HSPs)
chr5 (237-670)||(16692106-16692539)
chr5 (470-508)||(13717601-13717639)
[»] chr1 (8 HSPs)
chr1 (232-365)||(26137432-26137565)
chr1 (237-359)||(5921979-5922101)
chr1 (277-537)||(28126228-28126485)
chr1 (478-545)||(5922220-5922287)
chr1 (277-363)||(266893-266979)
chr1 (322-363)||(28132084-28132125)
chr1 (478-568)||(267091-267181)
chr1 (467-536)||(28132241-28132310)
[»] scaffold0038 (3 HSPs)
scaffold0038 (388-539)||(44327-44478)
scaffold0038 (484-542)||(40882-40940)
scaffold0038 (237-364)||(44511-44638)
[»] chr4 (8 HSPs)
chr4 (319-670)||(5089545-5089893)
chr4 (275-362)||(18678104-18678191)
chr4 (283-362)||(18688169-18688248)
chr4 (478-568)||(18075102-18075192)
chr4 (283-363)||(18730050-18730130)
chr4 (275-362)||(18654024-18654111)
chr4 (283-362)||(18697955-18698034)
chr4 (283-362)||(18722625-18722704)
[»] chr8 (9 HSPs)
chr8 (232-355)||(35984859-35984982)
chr8 (232-355)||(31906614-31906737)
chr8 (237-363)||(12590287-12590413)
chr8 (301-364)||(16371702-16371765)
chr8 (489-641)||(31906322-31906474)
chr8 (277-364)||(16441598-16441685)
chr8 (481-530)||(16450277-16450326)
chr8 (488-587)||(35984621-35984720)
chr8 (478-544)||(12590106-12590172)
[»] scaffold0019 (1 HSPs)
scaffold0019 (237-668)||(56795-57235)
[»] scaffold0012 (3 HSPs)
scaffold0012 (232-363)||(211626-211757)
scaffold0012 (467-537)||(238605-238675)
scaffold0012 (478-510)||(211872-211904)
[»] scaffold1870 (2 HSPs)
scaffold1870 (298-363)||(333-398)
scaffold1870 (377-537)||(141-301)
[»] scaffold0419 (2 HSPs)
scaffold0419 (298-363)||(9051-9116)
scaffold0419 (377-542)||(8854-9019)
[»] chr3 (2 HSPs)
chr3 (304-363)||(615342-615401)
chr3 (478-510)||(615195-615227)
[»] scaffold0573 (1 HSPs)
scaffold0573 (303-361)||(7583-7641)
[»] scaffold0007 (3 HSPs)
scaffold0007 (303-357)||(67865-67919)
scaffold0007 (303-356)||(32519-32572)
scaffold0007 (303-356)||(37268-37321)
[»] scaffold0003 (1 HSPs)
scaffold0003 (478-568)||(60910-61000)
[»] scaffold0349 (2 HSPs)
scaffold0349 (480-568)||(2292-2380)
scaffold0349 (306-356)||(2112-2162)
[»] scaffold0277 (4 HSPs)
scaffold0277 (377-537)||(12325-12485)
scaffold0277 (478-537)||(3463-3522)
scaffold0277 (291-361)||(3261-3331)
scaffold0277 (291-361)||(12224-12294)


Alignment Details
Target: chr6 (Bit Score: 648; Significance: 0; HSPs: 95)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 28 - 679
Target Start/End: Original strand, 28096744 - 28097395
Alignment:
Q  28 gaaaatccaaacgtatgatttcaatttgacttgttccctacaaaaagtacaaatcaaccaaaacccatatggatgtgtcataactcacacacacttcctt 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28096744 gaaaatccaaacgtatgatttcaatttgacttgttccctacaaaaagtacaaatcaaccaaaacccatatggatgtgtcataactcacacacacttcctt 28096843  T
Q  128 aaagaaattttaatgccataattttaatctaatagtagcactaatattcaaaagagctgaatcatggttaaagttaaaataaaataaaaatctatattgg 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28096844 aaagaaattttaatgccataattttaatctaatagtagcactaatattcaaaagagctgaatcatggttaaagttaaaataaaataaaaatctatattgg 28096943  T
Q  228 tcttactgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttct 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28096944 tcttactgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttct 28097043  T
Q  328 ttacccatgtcttctatcaagtcatgtaatgtcacaaagcgctcattaataatcttcacaagagattttttaaccaacactccaatgtgatatctcatgc 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097044 ttacccatgtcttctatcaagtcatgtaatgtcacaaagcgctcattaataatcttcacaagagattttttaaccaacactccaatgtgatatctcatgc 28097143  T
Q  428 gttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctc 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097144 gttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctc 28097243  T
Q  528 caaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttcca 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28097244 caaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttcca 28097343  T
Q  628 tacaagttggaacctaatatttccaaggccaatggaaggccagcagtataat 679  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28097344 tacaagttggaacctaatatttccaaggccaatggaaggccagcagcataat 28097395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 235 - 632
Target Start/End: Complemental strand, 29827669 - 29827263
Alignment:
Q  235 gaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttaccca 334  Q
    |||||||||||||| ||||||| ||||||||||| |||| ||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||||||||    
T  29827669 gaattttcttctaagacttgaactatatcttcatagaaccacaacctactacgctttccaggctctttcggtgattcttgtcgtacaatttctttaccca 29827570  T
Q  335 tgtcttctatcaagtcatgtaatgtcacaa-ag--------cgctcattaataatcttcacaagagattttttaaccaacactccaatgtgatatctcat 425  Q
    |||||||||||||||||||||||||||||| ||        | |  || ||||||||  |  |||| |||||  |||||||||||||| ||||||   ||    
T  29827569 tgtcttctatcaagtcatgtaatgtcacaacagcatccgtacccaaatgaataatctgtatgagagttttttcgaccaacactccaatatgatattctat 29827470  T
Q  426 gcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcc 525  Q
    || |||||| | |||||||||||| |||||||  ||||||  ||| | ||||||||||||||||||||||||||||||||||||||     |||||||||    
T  29827469 gctttgaccatgatgagcacaaagaatatctttgacctctcccaaatcataccctttgaagcaacaagcaatgtcgagaaaaacaccttgttcatcttcc 29827370  T
Q  526 tccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttc 625  Q
    ||||||||||||||||| |    |||||| ||||| ||||||| | ||||||| |||||||||| ||| || | ||| |||||||||||||||| |||||    
T  29827369 tccaaagcatcaaaacttattttaagtatattttggatctctttattaggaatcctttcatatctatctaatatagatttccattcttctatattctttc 29827270  T
Q  626 catacaa 632  Q
    || ||||    
T  29827269 caaacaa 29827263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 218 - 459
Target Start/End: Complemental strand, 28150872 - 28150631
Alignment:
Q  218 tctatattggtcttactgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtct 317  Q
    ||||| || |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| | || || ||||| |||||||||||||||||||     
T  28150872 tctatgttagtcttactgaatttccttctaaaacttgaaatatatcttcatagaaccacaacctgttgcgcttcccaggctcttttggtgattcttgtcg 28150773  T
Q  318 tacaatttctttacccatgtcttctatcaagtcatgtaatgtcacaaagcgctcattaataatcttcacaagagattttttaaccaacactccaatgtga 417  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| | | |  |  |  ||| || | ||||||||||||||||||||||||||| |||    
T  28150772 tacaatttctttacccatgtcttctatcaagtcatgtaatgttacataaccccgaggacaaatttttagaagagattttttaaccaacactccaatatga 28150673  T
Q  418 tatctcatgcgttgaccgtaatgagcacaaagcatatcttcc 459  Q
    ||| |||||| |||||| ||||||||||| | ||||| ||||    
T  28150672 tatttcatgcattgaccataatgagcacataacatatattcc 28150631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 270 - 632
Target Start/End: Original strand, 29842526 - 29842897
Alignment:
Q  270 gaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcacaaa---- 365  Q
    |||| ||||||| ||| | |||||||| ||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||         
T  29842526 gaaccacaacctactatgctttccaggctctttcgttgattctggtcgtacaatttctttacccatgtcttctatcaagtcatgtagtgtcacaatagca 29842625  T
Q  366 -gcg--ctca--ttaataatcttcacaagagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttcca 460  Q
     |||  ||||  | ||||||||| |  |||| |||||  |||||||||||||| ||||||   |||| |||||| | || ||||||||| |||||||| |    
T  29842626 tgcgaactcaactgaataatctttatgagagttttttcgaccaacactccaatatgatattctatgcattgaccatgataagcacaaagaatatcttcaa 29842725  T
Q  461 cctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttg 560  Q
    |||||  ||| | ||||||||||||||||||||||||||||||||||||||     || |||||||||||||||||||| || |    |||||| || ||    
T  29842726 cctctcccaaatcataccctttgaagcaacaagcaatgtcgagaaaaacaccttgttcgtcttcctccaaagcatcaaagcttattttaagtatattgtg 29842825  T
Q  561 aatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaa 632  Q
     ||||||| | ||||||| |||||||| | ||| ||   ||| |||||||||||||||| ||||||| ||||    
T  29842826 gatctctttattaggaatcctttcatacctatctaatgtagatttccattcttctatattctttccaaacaa 29842897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 236 - 670
Target Start/End: Complemental strand, 28141217 - 28140774
Alignment:
Q  236 aattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccat 335  Q
    ||||||||||||||||||| | ||| |||| ||||||| | || || || ||||| ||||| |||||||||||||||||||  |||||||||||||||||    
T  28141217 aattttcttctaaaacttggactatgtctttatggaaccataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccat 28141118  T
Q  336 gtcttctatcaagtcatgtaatgtcaca-aag----cgctcat----taataatcttcacaagagattttttaaccaacactccaatgtgatatctcatg 426  Q
     || |||||||||||||||||||||||| |||      | |||    ||  |||||| |  ||| |||| |  | |||||||| ||| |||||| |||||    
T  28141117 ctcctctatcaagtcatgtaatgtcacataagtacaaccacattgtctataaatctttattagacatttctcgatcaacactctaatatgatatttcatg 28141018  T
Q  427 cgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcct 526  Q
    | || ||||||||||||| | || |||||||| ||||||   ||| |||| ||| |||| ||||||||||||||||||||||||||   |||||||| ||    
T  28141017 cattcaccgtaatgagcatagagaatatcttcaacctctgctaatatatatcctctgaaacaacaagcaatgtcgagaaaaacactttgctcatctttct 28140918  T
Q  527 ccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttcc 626  Q
    |||||  |||||| |||||   |||||| ||  | | ||||| |  |||||| |||||||| ||||| ||   ||| ||||| || ||| ||||||||||    
T  28140917 ccaaactatcaaagctcactttaagtatcttcaggacctctttatgaggaatcctttcataccgatctaatgtagatttccactcatctttatgctttcc 28140818  T
Q  627 atacaagttggaacctaatatttccaaggccaatggaaggccag 670  Q
    | ||||| | ||||| | || ||| || ||||||||||||||||    
T  28140817 aaacaagctagaaccaactacttctaaagccaatggaaggccag 28140774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 258 - 539
Target Start/End: Complemental strand, 2186474 - 2186196
Alignment:
Q  258 tatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaat 357  Q
    ||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||| ||| |||||||||||||| || ||||||||||||||||||    
T  2186474 tatatcttcatgggaccacaacctactacgttttccaggctcttttggtgattcttgtcgtacgatttctttacccatttcctctatcaagtcatgtaat 2186375  T
Q  358 gtcacaaagcgctcattaataatcttcacaagagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatctt 457  Q
    |||||| | | | |   ||||||||| |  || ||||||| ||||||||||||||| |||| | | ||||  | |   |||||||||  ||| |||||||    
T  2186374 gtcacacaaccccc---aataatctttatgagtgatttttcaaccaacactccaatatgatttttgatgcaataagtataatgagcatcaagtatatctt 2186278  T
Q  458 ccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaa 539  Q
      | ||||| || | || | ||||||||  ||||||||||||||||||| | |||| | || || |||| ||||||||||||    
T  2186277 ggaactcttccagtctacatcctttgaaaaaacaagcaatgtcgagaaagagactcttatcttcctcctgcaaagcatcaaa 2186196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 388 - 539
Target Start/End: Complemental strand, 28244316 - 28244165
Alignment:
Q  388 agagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagc 487  Q
    |||||||||| | ||||||| |  || |||||| ||||||  | ||| ||||||||| |||| |||||||| |  |||||||| ||||| ||||||||||    
T  28244316 agagatttttcatccaacacactgatttgatatttcatgcagttaccataatgagcataaagtatatcttcaagttctttcaaattatatcctttgaagc 28244217  T
Q  488 aacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaa 539  Q
    | ||||||||||||||||||||| ||  |||||||| |||||||||||||||    
T  28244216 agcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaa 28244165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 29469884 - 29469759
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||||||||||||||| |||||||| |  | || | ||||| || ||||||||||| ||||  |||||||||||||| ||||||||||| |||||     
T  29469884 attttcttctaaaacttgaattatatctttagaggaccataacctactgcgttttccaggatcttcaggtgattcttgtctaacaatttctttccccata 29469785  T
Q  337 tcttctatcaagtcatgtaatgtcac 362  Q
    || |||||||| ||||||||||||||    
T  29469784 tcctctatcaaatcatgtaatgtcac 29469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 232 - 363
Target Start/End: Original strand, 29673514 - 29673645
Alignment:
Q  232 actgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttac 331  Q
    |||| |||||||||||||||||||| |||||||||    ||| | ||||| |||||||||||||| ||||  |||| ||||||||| ||||||||||| |    
T  29673514 actgtattttcttctaaaacttgaattatatcttcggaaaaccataacctactacgttttccaggatcttcaggtgcttcttgtctaacaatttcttttc 29673613  T
Q  332 ccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    |||| || |||| ||| |||||||||||||||    
T  29673614 ccatatcctctaccaaatcatgtaatgtcaca 29673645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 436 - 670
Target Start/End: Complemental strand, 28326951 - 28326717
Alignment:
Q  436 taatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcat 535  Q
    |||||||||  ||| |||||||| |  |||||||||| ||| || |||||||| ||||||||||||||||||||| ||  ||||||||| ||||||||||    
T  28326951 taatgagcatgaagtatatcttcaagttctttcaattcatatccattgaagcagcaagcaatgtcgagaaaaacattctgctcatcttcatccaaagcat 28326852  T
Q  536 caaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagtt 635  Q
    |||| || ||   ||||||   ||| |||| || | | ||||| ||||||||  |||  ||   ||| || |||||| |||||| ||||||| |||||||    
T  28326851 caaagcttactttaagtatcgcttggatctttttaatgggaatcctttcatactgatataatgcagatttacattctactatattctttccaaacaagtt 28326752  T
Q  636 ggaacctaatatttccaaggccaatggaaggccag 670  Q
    |||||| | || ||| || ||||||||||||||||    
T  28326751 ggaacccactacttctaaagccaatggaaggccag 28326717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 436 - 670
Target Start/End: Complemental strand, 28504587 - 28504353
Alignment:
Q  436 taatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcat 535  Q
    |||||||||  ||| |||||||| |  |||||||||| ||| || |||||||| ||||||||||||||||||||| ||  ||||||||| ||||||||||    
T  28504587 taatgagcatgaagtatatcttcaagttctttcaattcatatccattgaagcagcaagcaatgtcgagaaaaacattctgctcatcttcatccaaagcat 28504488  T
Q  536 caaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagtt 635  Q
    |||| || ||   ||||||   ||| |||| || | | ||||| ||||||||  |||  ||   ||| || |||||| |||||| ||||||| |||||||    
T  28504487 caaagcttactttaagtatcgcttggatctttttaatgggaatcctttcatactgatataatgcagatttacattctactatattctttccaaacaagtt 28504388  T
Q  636 ggaacctaatatttccaaggccaatggaaggccag 670  Q
    |||||| | || ||| || ||||||||||||||||    
T  28504387 ggaacccactacttctaaagccaatggaaggccag 28504353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 451 - 568
Target Start/End: Original strand, 27704978 - 27705095
Alignment:
Q  451 atatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaa 550  Q
    |||| ||| |||||| ||||| |||||||||| ||||||||||||||||| ||||| ||||||  ||| ||||| |||||||||||| | ||||| | ||    
T  27704978 atattttcaacctctgtcaatctatacccttttaagcaacaagcaatgtcaagaaagacactctgctcctcttcttccaaagcatcatagctcactctaa 27705077  T
Q  551 gtattttttgaatctctt 568  Q
    |||| ||||| |||||||    
T  27705078 gtatcttttggatctctt 27705095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 478 - 650
Target Start/End: Original strand, 27697337 - 27697509
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaa 577  Q
    ||||||||||||||||||||||| ||||| |||||   ||| ||||| |||||||||||| | ||||| | |||||| ||||| ||||||| | | ||||    
T  27697337 cctttgaagcaacaagcaatgtccagaaagacactttgctcctcttcttccaaagcatcatagctcactctaagtatcttttggatctctttattgggaa 27697436  T
Q  578 ttctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatttc 650  Q
    | || ||||| | ||| || | | | |||||||||||||| | ||||||| ||||||| ||||| | ||||||    
T  27697437 tcctgtcatacccatctaatatatacttccattcttctatgttctttccaaacaagttagaacccactatttc 27697509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 28327157 - 28327064
Alignment:
Q  239 tttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacc 332  Q
    |||||||||| || |||| |||||||| ||| ||| ||||||| |||| |||||||||||||||| | ||||||||||  ||||||||||||||    
T  28327157 tttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacc 28327064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 28504793 - 28504700
Alignment:
Q  239 tttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacc 332  Q
    |||||||||| || |||| |||||||| ||| ||| ||||||| |||| |||||||||||||||| | ||||||||||  ||||||||||||||    
T  28504793 tttcttctaagacatgaattatatctttatgaaaccacaacctactacattttccaggttcttttagggattcttgtcgaacaatttctttacc 28504700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 385 - 537
Target Start/End: Original strand, 27603362 - 27603514
Alignment:
Q  385 acaagagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttga 484  Q
    ||||||||||||| | |||||||||| |  |||| | | ||||  || || |||||||||| ||| |||||||| ||| ||| ||||  | | |||||||    
T  27603362 acaagagatttttcagccaacactcctagatgatgtgttatgcaatggccataatgagcacgaagtatatcttcaaccacttccaatccacatcctttga 27603461  T
Q  485 agcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    |||||||||||||||| ||||| ||||||  ||  ||||||||||||||||||    
T  27603462 agcaacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatca 27603514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 436 - 568
Target Start/End: Complemental strand, 27680423 - 27680291
Alignment:
Q  436 taatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcat 535  Q
    |||||||||||||| |||||||| | ||| ||| ||| ||| ||||||||||| ||||| ||||| ||||| ||||||  ||| ||||| ||||||||||    
T  27680423 taatgagcacaaagtatatcttcgaactccttccattgatatcctttgaagcagcaagcgatgtcaagaaagacactctgctcctcttcttccaaagcat 27680324  T
Q  536 caaaactcacacgaagtattttttgaatctctt 568  Q
    || | |||||   |||||| ||||| |||||||    
T  27680323 catagctcaccttaagtatcttttggatctctt 27680291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 463 - 539
Target Start/End: Original strand, 28296476 - 28296552
Alignment:
Q  463 tctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaa 539  Q
    |||||||||| ||| ||||||||||| ||||| ||||| ||||||||| |  |||||||||||||||||||||||||    
T  28296476 tctttcaattcatatcctttgaagcagcaagcgatgtcaagaaaaacatttttctcatcttcctccaaagcatcaaa 28296552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 463 - 539
Target Start/End: Complemental strand, 28515597 - 28515521
Alignment:
Q  463 tctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaa 539  Q
    |||||||||| ||| ||||||||||| ||||| ||||| ||||||||| |  |||||||||||||||||||||||||    
T  28515597 tctttcaattcatatcctttgaagcagcaagcgatgtcaagaaaaacatttttctcatcttcctccaaagcatcaaa 28515521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 26624939 - 26624816
Alignment:
Q  238 ttttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgt 337  Q
    ||||||| |||||| ||||||||||| || ||  || | || || || |||| |||||| ||||| |||||||||||||  || ||| ||||||||||||    
T  26624939 ttttcttttaaaacatgaaatatatcatcttgacaccataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgt 26624840  T
Q  338 cttctatcaagtcatgtaatgtca 361  Q
    | ||||||||||||||||| ||||    
T  26624839 cctctatcaagtcatgtaaggtca 26624816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 238 - 361
Target Start/End: Complemental strand, 26730916 - 26730793
Alignment:
Q  238 ttttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgt 337  Q
    ||||||| |||||| ||||||||||| || ||  || | || || || |||| |||||| ||||| |||||||||||||  || ||| ||||||||||||    
T  26730916 ttttcttttaaaacatgaaatatatcatcttgacaccataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgt 26730817  T
Q  338 cttctatcaagtcatgtaatgtca 361  Q
    | ||||||||||||||||| ||||    
T  26730816 cctctatcaagtcatgtaaggtca 26730793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 364
Target Start/End: Original strand, 28296241 - 28296368
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||||||| || |||| ||| |||| ||||||| ||||||| |||||| |||| || |||||||| |||| ||     |||||||||||||||||     
T  28296241 attttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccatt 28296340  T
Q  337 tcttctatcaagtcatgtaatgtcacaa 364  Q
    |  ||||||||| |||||||||||||||    
T  28296341 ttctctatcaaggcatgtaatgtcacaa 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 28515832 - 28515705
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||||||| || |||| ||| |||| ||||||| ||||||| |||||| |||| || |||||||| |||| ||     |||||||||||||||||     
T  28515832 attttcttctaagacatgaattatgtctttatggaaccacaacctactacgtcttcctggctcttttggagatttttcatgcacaatttctttacccatt 28515733  T
Q  337 tcttctatcaagtcatgtaatgtcacaa 364  Q
    |  ||||||||| |||||||||||||||    
T  28515732 ttctctatcaaggcatgtaatgtcacaa 28515705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 542
Target Start/End: Complemental strand, 28240778 - 28240720
Alignment:
Q  484 aagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaact 542  Q
    |||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||    
T  28240778 aagcaacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaaact 28240720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 388 - 537
Target Start/End: Complemental strand, 26885588 - 26885439
Alignment:
Q  388 agagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagc 487  Q
    ||||||||||  |||||||||||||  |||| | | ||||  || || |||||||||  ||| |||||||| |||||| || ||||| ||||||||||||    
T  26885588 agagatttttcgaccaacactccaacatgatgttttatgcaatggccataatgagcatgaagtatatcttcgacctctgtccatttacaccctttgaagc 26885489  T
Q  488 aacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    ||||||| || || ||||| |||||   ||| |||||||| |||||||||    
T  26885488 aacaagctatatccagaaagacactttgctcctcttcctctaaagcatca 26885439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 363
Target Start/End: Complemental strand, 26960802 - 26960677
Alignment:
Q  238 ttttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgt 337  Q
    ||||||| |||||| |||| |||||| ||| |  || ||||||| || ||||||||||| |||||   |||||| ||||  ||||||||  ||||||| |    
T  26960802 ttttcttgtaaaacatgaactatatcatcacgacaccacaacctactgcgttttccaggctctttaattgattcctgtcgaacaatttccatacccatat 26960703  T
Q  338 cttctatcaagtcatgtaatgtcaca 363  Q
    | ||||||||||||||||||||||||    
T  26960702 cctctatcaagtcatgtaatgtcaca 26960677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 238 - 363
Target Start/End: Complemental strand, 27680639 - 27680514
Alignment:
Q  238 ttttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgt 337  Q
    ||||||| |||||| |||| ||||||||| ||   | | ||||| || |||| |||||| ||||| |||||||||||||  || | ||||||||||||||    
T  27680639 ttttcttttaaaacatgaattatatcttcttgacgccataacctacttcgttctccaggctctttaggtgattcttgtcggacgacttctttacccatgt 27680540  T
Q  338 cttctatcaagtcatgtaatgtcaca 363  Q
    | | |||||||||||||||| |||||    
T  27680539 cctttatcaagtcatgtaatctcaca 27680514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 25075548 - 25075432
Alignment:
Q  246 taaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatc 345  Q
    |||||| | ||||||||| || ||  || ||||||| ||||||| |||||| |||||   |||||| ||||  || ||||||||||||||||| |||| |    
T  25075548 taaaacatcaaatatatcatcgtgataccacaacctactacgttctccaggctctttaattgattcatgtcggacgatttctttacccatgtcctctaac 25075449  T
Q  346 aagtcatgtaatgtcac 362  Q
    |||||||||||||||||    
T  25075448 aagtcatgtaatgtcac 25075432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 229 - 361
Target Start/End: Complemental strand, 25581405 - 25581273
Alignment:
Q  229 cttactgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctt 328  Q
    ||||||| ||| |||  |||||| | ||||||||| || || ||| ||||||| || |||| |||||| |  || || ||||||||||  || |||||||    
T  25581405 cttactgtattatctcttaaaacgtcaaatatatcatcgtgaaaccacaacctactgcgttctccagggttcttgggagattcttgtcggacgatttctt 25581306  T
Q  329 tacccatgtcttctatcaagtcatgtaatgtca 361  Q
    |||||||||| ||||||||||||||||| ||||    
T  25581305 tacccatgtcctctatcaagtcatgtaaggtca 25581273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 26850333 - 26850277
Alignment:
Q  306 tgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcac 362  Q
    |||||||||||  || ||||||||||||||||| |||||||||||||||||||||||    
T  26850333 tgattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaatgtcac 26850277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 27529849 - 27529937
Alignment:
Q  275 acaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||||| || |||| |||||| || |  |||||||||||||  || | ||||||||||||||| ||||||||||||||||||||||||    
T  27529849 acaacctactgcgttctccaggctcatcgggtgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgtcaca 27529937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 27591520 - 27591644
Alignment:
Q  238 ttttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgt 337  Q
    ||||||| |||||| |||| |||||| || ||  || | |||||||| | || |||||| ||||| |||||||||||||  || | |||||||||||||     
T  27591520 ttttcttttaaaacatgaactatatcatcttgagaccataacctgcttctttctccaggctctttaggtgattcttgtcggacgacttctttacccatga 27591619  T
Q  338 cttctatcaagtcatgtaatgtcac 362  Q
    | |||||||| ||||||||||||||    
T  27591620 cctctatcaattcatgtaatgtcac 27591644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 291 - 363
Target Start/End: Original strand, 27697147 - 27697219
Alignment:
Q  291 tccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    |||||| ||||| | |||||||||||  || | ||||||||||||||| ||||||||||||||||||||||||    
T  27697147 tccaggctctttagttgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaatgtcaca 27697219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 28151080 - 28151004
Alignment:
Q  29 aaaatccaaacgtatgatttcaatttgacttgttccctacaaaaagtacaaatcaaccaaaacccatatggatgtgt 105  Q
    |||||||||| |||| |||||||| |||||||| |||| ||||||| |||||||||||| ||| |||||| ||||||    
T  28151080 aaaatccaaatgtataatttcaatctgacttgtcccctgcaaaaagcacaaatcaaccataacacatatgtatgtgt 28151004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 28787877 - 28787805
Alignment:
Q  291 tccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    |||||| ||||| || ||||||||||  || | |||||||||||||||||||||||||||||||||| |||||    
T  28787877 tccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatcaagtcatgtaatctcaca 28787805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 291 - 363
Target Start/End: Complemental strand, 28793998 - 28793926
Alignment:
Q  291 tccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    |||||| ||||| || ||||||||||  || | |||||||||||||||||||||||||||||||||| |||||    
T  28793998 tccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatcaagtcatgtaatctcaca 28793926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 306 - 357
Target Start/End: Complemental strand, 26938632 - 26938581
Alignment:
Q  306 tgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaat 357  Q
    |||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  26938632 tgattcttgtctaacaatttctttacccatgtcctcaatcaagtcatgtaat 26938581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 537
Target Start/End: Complemental strand, 27215891 - 27215824
Alignment:
Q  470 atttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||| |||| | |||||||| |||||||    
T  27215891 atttacaccctttgaagcaacaagcaatgtctagaaagacactcttctccttttcctccagagcatca 27215824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 28187081 - 28186954
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||| ||||||| || | || ||| |||| ||||||| ||||||| |||||| ||||||| |||||||| || ||||  |  |||||||||||||||||     
T  28187081 atttgcttctaagacatcaattatgtctttatggaaccacaacctactacgtcttccaggctcttttggagactctttccggacaatttctttacccatt 28186982  T
Q  337 tcttctatcaagtcatgtaatgtcacaa 364  Q
    |  ||||||||| ||||||| |||||||    
T  28186981 ttctctatcaaggcatgtaacgtcacaa 28186954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 28244476 - 28244349
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||||||| || | || |||||||| ||||||| ||||||||||| || ||||||| || ||||| |||| ||   | |||||||||||||||||     
T  28244476 attttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttctttacccatt 28244377  T
Q  337 tcttctatcaagtcatgtaatgtcacaa 364  Q
    |  |||||||||  |||||| |||||||    
T  28244376 ttctctatcaagaaatgtaacgtcacaa 28244349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 26885720 - 26885634
Alignment:
Q  277 aacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||| ||||||| |||||| |||||   ||||||||| |  || ||||||||||||||||| |||| |||||||||||||||||||    
T  26885720 aacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctctaccaagtcatgtaatgtcaca 26885634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 238 - 355
Target Start/End: Complemental strand, 26804135 - 26804018
Alignment:
Q  238 ttttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgt 337  Q
    ||||||| || ||| |||| ||||||||||||   | | ||||| || |||||| |||| ||||| |||||||||||||  || | ||||||||||||||    
T  26804135 ttttcttttataacatgaactatatcttcatgacgccataacctacttcgtttttcaggatctttaggtgattcttgtcggacgacttctttacccatgt 26804036  T
Q  338 cttctatcaagtcatgta 355  Q
    | | ||||||||||||||    
T  26804035 cctttatcaagtcatgta 26804018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 238 - 363
Target Start/End: Complemental strand, 26863248 - 26863123
Alignment:
Q  238 ttttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgt 337  Q
    |||||||||||||| || | |||||| |||||  || | ||||| || ||||  || || ||||| || ||||||||||  || |||||||| |||||||    
T  26863248 ttttcttctaaaacgtggattatatcatcatgacaccataacctacttcgttcacccggctctttaggagattcttgtcggacgatttctttgcccatgt 26863149  T
Q  338 cttctatcaagtcatgtaatgtcaca 363  Q
    | |||||||||||||||||| |||||    
T  26863148 cctctatcaagtcatgtaatctcaca 26863123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 27676158 - 27676243
Alignment:
Q  277 aacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcac 362  Q
    |||||||| | || |||||| ||||| |||||||||||||  || | ||||||||||||| | |||||||| ||||||||||||||    
T  27676158 aacctgcttctttctccaggctctttaggtgattcttgtcggaccacttctttacccatgacctctatcaattcatgtaatgtcac 27676243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 286 - 359
Target Start/End: Original strand, 29694945 - 29695018
Alignment:
Q  286 cgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgt 359  Q
    ||||||||||| ||||  ||||||||| |||| ||||||||||| ||||| || |||||||| |||||||||||    
T  29694945 cgttttccaggatcttcaggtgattctcgtctaacaatttctttccccatatcctctatcaaatcatgtaatgt 29695018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 286 - 363
Target Start/End: Original strand, 29759005 - 29759082
Alignment:
Q  286 cgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||||||||| ||||  || ||||||||||| ||||||||||||||||| || |||| ||| ||||| |||||||||    
T  29759005 cgttttccaggatcttgaggcgattcttgtctaacaatttctttacccatatcctctaccaaatcatgcaatgtcaca 29759082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 26144473 - 26144417
Alignment:
Q  307 gattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||||||||  || ||||||||||||||||| ||||||||||||||||| ||||||    
T  26144473 gattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaaggtcaca 26144417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 26637309 - 26637193
Alignment:
Q  246 taaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatc 345  Q
    |||||| |||| |||||| |||||  || ||||||| || |||| |||||| |  ||  ||||||||||||  || |||||| ||||||| || ||||||    
T  26637309 taaaacatgaactatatcgtcatgacaccacaacctactgcgttctccaggcttattacgtgattcttgtcggacgatttctatacccatatcctctatc 26637210  T
Q  346 aagtcatgtaatgtcac 362  Q
    |||||||||||||||||    
T  26637209 aagtcatgtaatgtcac 26637193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 26743275 - 26743159
Alignment:
Q  246 taaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatc 345  Q
    |||||| |||| |||||| |||||  || ||||||| || |||| |||||| |  ||  ||||||||||||  || |||||| ||||||| || ||||||    
T  26743275 taaaacatgaactatatcgtcatgacaccacaacctactgcgttctccaggcttattacgtgattcttgtcggacgatttctatacccatatcctctatc 26743176  T
Q  346 aagtcatgtaatgtcac 362  Q
    |||||||||||||||||    
T  26743175 aagtcatgtaatgtcac 26743159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 26813178 - 26813102
Alignment:
Q  286 cgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcac 362  Q
    |||| ||| |||||||  ||||||||||||   ||||||||||||||| |||  |||||||||||||||||||||||    
T  26813178 cgttctcctggttcttcaggtgattcttgttggacaatttctttacccgtgtgctctatcaagtcatgtaatgtcac 26813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 402 - 670
Target Start/End: Complemental strand, 28186901 - 28186633
Alignment:
Q  402 caacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcg 501  Q
    ||||||||  || |||||| ||||||  | ||| |||||||||  ||| | |||||| |  |||||||||| ||| ||||||||||| ||||| ||||||    
T  28186901 caacactctgatttgatatttcatgcagttaccataatgagcatgaagtacatcttcaagttctttcaattcatatcctttgaagcagcaagcgatgtcg 28186802  T
Q  502 agaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaag 601  Q
    ||||||||| |    ||  ||||| ||||||||||||| || ||    ||||| | ||| |||| || |   ||||| ||||||||  |||  ||   ||    
T  28186801 agaaaaacattttgttctgcttcccccaaagcatcaaagcttactttgagtatctcttggatctttttatcgggaatcctttcatactgatttaatgcag 28186702  T
Q  602 aattccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 670  Q
    | ||||||||| |||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28186701 atttccattctcctatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28186633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 26647910 - 26647851
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    ||||||||||||||||||||||| ||||| ||||||  ||  ||||||||||||||||||    
T  26647910 cctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatca 26647851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 26753878 - 26753819
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    ||||||||||||||||||||||| ||||| ||||||  ||  ||||||||||||||||||    
T  26753878 cctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatca 26753819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 26803877 - 26803818
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    ||||||||||||||||||||||| ||||| ||||||  ||  ||||||||||||||||||    
T  26803877 cctttgaagcaacaagcaatgtctagaaagacactctgctgctcttcctccaaagcatca 26803818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 228 - 363
Target Start/End: Complemental strand, 26951430 - 26951295
Alignment:
Q  228 tcttactgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttct 327  Q
    ||||||||  ||||||| |||||| ||||  ||||| ||| |  || ||||||| || |||| |||||||||| |   |||||||||||  |  ||||||    
T  26951430 tcttactgtgttttcttgtaaaacatgaacaatatcatcacgagaccacaacctactgcgttctccaggttctctaattgattcttgtcggatgatttct 26951331  T
Q  328 ttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
     ||||||| || ||||||||||||||||||||||||    
T  26951330 atacccatatcctctatcaagtcatgtaatgtcaca 26951295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 545
Target Start/End: Original strand, 29727701 - 29727768
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcac 545  Q
    ||||||||||||||||||||||| |||||||||  | |||| || ||||||| ||||||||| |||||    
T  29727701 cctttgaagcaacaagcaatgtcaagaaaaacaaacttctcttcgtcctccagagcatcaaagctcac 29727768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 537
Target Start/End: Complemental strand, 31285990 - 31285931
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    ||||||||||||||||||||||| ||||| ||||||  ||| ||||| ||||||||||||    
T  31285990 cctttgaagcaacaagcaatgtccagaaagacactctgctcctcttcttccaaagcatca 31285931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 298 - 357
Target Start/End: Complemental strand, 31286173 - 31286114
Alignment:
Q  298 tcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaat 357  Q
    ||||| |||||||||||||  || | ||||||||||||||| ||||||||||||||||||    
T  31286173 tctttaggtgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaat 31286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 568
Target Start/End: Original strand, 27426363 - 27426453
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctctt 568  Q
    ||||||||||||||||||||||| ||||| |||||   ||| ||||||||||||| |||| | |||||   ||||||| |||| |||||||    
T  27426363 cctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcctccaaagaatcatagctcactttaagtattctttggatctctt 27426453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 470 - 568
Target Start/End: Original strand, 27530047 - 27530145
Alignment:
Q  470 atttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctctt 568  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||   ||| |||| |||||||| |||| | |||||   ||||||| |||| |||||||    
T  27530047 atttacaccctttgaagcaacaagcaatgtctagaaagacactttgctcttctttctccaaagaatcatagctcactttaagtattctttggatctctt 27530145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 650
Target Start/End: Original strand, 27609865 - 27610043
Alignment:
Q  472 ttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcac 571  Q
    ||||| ||||||||||||||||||||||| ||||| |||||   ||| ||||| ||||||| |||| | |||||   |||||| ||||| ||||||| |     
T  27609865 ttatatcctttgaagcaacaagcaatgtccagaaagacactttgctcctcttcttccaaagaatcatagctcactttaagtatcttttggatctctttat 27609964  T
Q  572 taggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatttc 650  Q
    | ||||| || ||||| | ||| ||   | | |||||||| ||||| | ||||||| ||||||| ||||| | ||||||    
T  27609965 tgggaatcctgtcatacccatctaatgtatacttccattcctctatgttctttccaaacaagttagaacccactatttc 27610043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 28902211 - 28902153
Alignment:
Q  303 tggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtca 361  Q
    |||||||||| |||| ||||||||||| ||||| ||||||||||  |||||||||||||    
T  28902211 tggtgattctagtctgacaatttcttttcccatatcttctatcagatcatgtaatgtca 28902153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 25484713 - 25484608
Alignment:
Q  258 tatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaat 357  Q
    |||||| || || ||| ||||||| || |||| |||||| |  || || ||||||||||  || | ||||||||||||||| |||||||||||||||||     
T  25484713 tatatcatcgtgaaaccacaacctactgcgttctccaggcttcttgggagattcttgtcgaacgacttctttacccatgtcctctatcaagtcatgtaag 25484614  T
Q  358 gtcaca 363  Q
    ||||||    
T  25484613 gtcaca 25484608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #64
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 29469651 - 29469582
Alignment:
Q  470 atttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaa 539  Q
    ||||||| ||||||||||| || |||||||| |||||||||  | |||| ||||||| ||||||||||||    
T  29469651 atttatatcctttgaagcagcaggcaatgtcaagaaaaacagacttctcttcttcctgcaaagcatcaaa 29469582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #65
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 301 - 358
Target Start/End: Original strand, 29727524 - 29727581
Alignment:
Q  301 tttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatg 358  Q
    |||||||| |||||||| ||||||||||| ||||| ||||||| ||| ||||||||||    
T  29727524 tttggtgactcttgtctaacaatttcttttcccatatcttctagcaaatcatgtaatg 29727581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #66
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 25491849 - 25491933
Alignment:
Q  275 acaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgt 359  Q
    ||||||| ||||||| |||||| || ||  ||||||||||||  || | ||||||||||||||  |||||||||| |||||||||    
T  25491849 acaacctactacgttctccaggatcattacgtgattcttgtcgaacgacttctttacccatgtgctctatcaagttatgtaatgt 25491933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #67
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 323 - 363
Target Start/End: Complemental strand, 25512480 - 25512440
Alignment:
Q  323 tttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    |||||||||||||||| ||||||||||||||||| ||||||    
T  25512480 tttctttacccatgtcctctatcaagtcatgtaaggtcaca 25512440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #68
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 25546588 - 25546532
Alignment:
Q  307 gattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||||||||  || | ||||||||||||||| ||||||||||||||||| ||||||    
T  25546588 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaaggtcaca 25546532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #69
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 470 - 518
Target Start/End: Complemental strand, 25581161 - 25581113
Alignment:
Q  470 atttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctc 518  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||| ||||    
T  25581161 atttacaccctttgaagcaacaagcaatgtctagaaagacactcttctc 25581113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #70
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 26057527 - 26057471
Alignment:
Q  307 gattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||||||||  || | ||||||||||||||| ||||||||||||||||| ||||||    
T  26057527 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaaggtcaca 26057471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #71
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 26077497 - 26077441
Alignment:
Q  307 gattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||||||||  || | ||||||||||||||| ||||||||||||||||| ||||||    
T  26077497 gattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaaggtcaca 26077441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #72
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 26979020 - 26978936
Alignment:
Q  275 acaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgt 359  Q
    ||||||| || |||| ||||||||||||   |||||||||||  || |||||| ||||||| || |||||||||| |||||||||    
T  26979020 acaacctactgcgttctccaggttctttaattgattcttgtcggacgatttctatacccatatcctctatcaagtaatgtaatgt 26978936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #73
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 237 - 357
Target Start/End: Complemental strand, 27216127 - 27216007
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||| || |||||||| |||||| || || ||| ||||||| || ||||  ||||| |  |  |||||||||||||  |||| |||| |||||||     
T  27216127 attttcttttagaacttgaactatatcatcgtgaaaccacaacctactgcgttccccaggattgtcgggtgattcttgtcggacaacttctctacccata 27216028  T
Q  337 tcttctatcaagtcatgtaat 357  Q
    || ||||||||||||||||||    
T  27216027 tcctctatcaagtcatgtaat 27216007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #74
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 568
Target Start/End: Original strand, 27717252 - 27717340
Alignment:
Q  480 tttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctctt 568  Q
    ||||||||||||||||||||| ||||| |||||   ||  |||||||||||||||||| |||| ||   |||||| ||||| |||||||    
T  27717252 tttgaagcaacaagcaatgtctagaaagacactttgctgctcttcctccaaagcatcataacttactttaagtatcttttggatctctt 27717340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #75
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 29758010 - 29758046
Alignment:
Q  31 aatccaaacgtatgatttcaatttgacttgttcccta 67  Q
    |||| ||||||||||||||||||||||||||||||||    
T  29758010 aatcaaaacgtatgatttcaatttgacttgttcccta 29758046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #76
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 25484498 - 25484455
Alignment:
Q  470 atttataccctttgaagcaacaagcaatgtcgagaaaaacactc 513  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||    
T  25484498 atttataccctttgaagtaacaagcaatgtctagaaagacactc 25484455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #77
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 25512330 - 25512287
Alignment:
Q  470 atttataccctttgaagcaacaagcaatgtcgagaaaaacactc 513  Q
    ||||||||||||||||| ||||||||||||| ||||| ||||||    
T  25512330 atttataccctttgaagtaacaagcaatgtctagaaagacactc 25512287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #78
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 26057361 - 26057318
Alignment:
Q  470 atttataccctttgaagcaacaagcaatgtcgagaaaaacactc 513  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||    
T  26057361 atttacaccctttgaagcaacaagcaatgtctagaaagacactc 26057318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #79
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 470 - 513
Target Start/End: Complemental strand, 26077331 - 26077288
Alignment:
Q  470 atttataccctttgaagcaacaagcaatgtcgagaaaaacactc 513  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||    
T  26077331 atttacaccctttgaagcaacaagcaatgtctagaaagacactc 26077288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #80
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 362
Target Start/End: Original strand, 27603253 - 27603324
Alignment:
Q  291 tccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcac 362  Q
    |||||| ||||| |||||||||||||  || | ||||||||||||||| |||||||||| ||| | ||||||    
T  27603253 tccaggctctttaggtgattcttgtcggacgacttctttacccatgtcctctatcaagttatgcagtgtcac 27603324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #81
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 28490046 - 28490121
Alignment:
Q  286 cgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtca 361  Q
    ||||||||||| | || |||||| |||||||| ||||||||||| ||||| || |||| ||| || ||||||||||    
T  28490046 cgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgtca 28490121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #82
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 286 - 361
Target Start/End: Original strand, 29802456 - 29802531
Alignment:
Q  286 cgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtca 361  Q
    ||||||||||| | || |||||| |||||||| ||||||||||| ||||| || |||| ||| || ||||||||||    
T  29802456 cgttttccaggattttctggtgactcttgtctaacaatttctttccccatatcctctaccaaatcgtgtaatgtca 29802531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #83
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 26657612 - 26657526
Alignment:
Q  277 aacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||| ||||||| ||| || |||||   |||||||||||  || ||||||||||||||||| |||||||| || ||||||| ||||    
T  26657612 aacctactacgttctccgggctctttacttgattcttgtcggacgatttctttacccatgtcctctatcaaatcgtgtaatgccaca 26657526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #84
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 26763583 - 26763497
Alignment:
Q  277 aacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||| ||||||| ||| || |||||   |||||||||||  || ||||||||||||||||| |||||||| || ||||||| ||||    
T  26763583 aacctactacgttctccgggctctttacttgattcttgtcggacgatttctttacccatgtcctctatcaaatcgtgtaatgccaca 26763497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #85
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 27609693 - 27609743
Alignment:
Q  306 tgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaa 356  Q
    |||||||||||  || | ||||||||||||||| |||||||||||||||||    
T  27609693 tgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 27609743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #86
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 27717072 - 27717122
Alignment:
Q  306 tgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaa 356  Q
    |||||||||||  || | ||||||||||||||| |||||||||||||||||    
T  27717072 tgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 27717122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #87
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 600 - 670
Target Start/End: Original strand, 28296613 - 28296683
Alignment:
Q  600 agaattccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 670  Q
    ||| |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28296613 agatttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28296683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #88
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 604 - 670
Target Start/End: Complemental strand, 28515456 - 28515390
Alignment:
Q  604 ttccattcttctatatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 670  Q
    |||||||||  ||||| ||||||| ||||||||||||| | || ||| || ||||||||||||||||    
T  28515456 ttccattctcttatattctttccaaacaagttggaacccactacttctaaagccaatggaaggccag 28515390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #89
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 544
Target Start/End: Original strand, 29673760 - 29673826
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactca 544  Q
    |||||||||||||| |||||||| ||||| ||| || |||| ||||||| ||||| |||| ||||||    
T  29673760 cctttgaagcaacatgcaatgtcaagaaacacaatcttctcttcttcctgcaaagaatcataactca 29673826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #90
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 513
Target Start/End: Complemental strand, 26144301 - 26144264
Alignment:
Q  476 accctttgaagcaacaagcaatgtcgagaaaaacactc 513  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  26144301 accctttgaagcaacaagcaatgtctagaaagacactc 26144264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #91
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 512
Target Start/End: Complemental strand, 26825249 - 26825216
Alignment:
Q  479 ctttgaagcaacaagcaatgtcgagaaaaacact 512  Q
    ||||||||||||||||||||||||| ||||||||    
T  26825249 ctttgaagcaacaagcaatgtcgaggaaaacact 26825216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #92
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 363
Target Start/End: Original strand, 27704836 - 27704893
Alignment:
Q  306 tgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    |||||||||||  || | |||||||||||| || |||||||||| |||||||||||||    
T  27704836 tgattcttgtcggacgacttctttacccatatcctctatcaagttatgtaatgtcaca 27704893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #93
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 28490225 - 28490270
Alignment:
Q  465 tttcaatttataccctttgaagcaacaagcaatgtcgagaaaaaca 510  Q
    |||||||||  | ||||||||||||||||||||||| |||||||||    
T  28490225 tttcaatttccatcctttgaagcaacaagcaatgtcaagaaaaaca 28490270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #94
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 539
Target Start/End: Original strand, 29759197 - 29759258
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaa 539  Q
    ||||| ||||||||||||||||| |||||||||  | |||| || || ||||||||||||||    
T  29759197 cctttaaagcaacaagcaatgtcaagaaaaacaaacttctcttcgtcttccaaagcatcaaa 29759258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #95
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 29802635 - 29802680
Alignment:
Q  465 tttcaatttataccctttgaagcaacaagcaatgtcgagaaaaaca 510  Q
    |||||||||  | ||||||||||||||||||||||| |||||||||    
T  29802635 tttcaatttccatcctttgaagcaacaagcaatgtcaagaaaaaca 29802680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 160 - 679
Target Start/End: Complemental strand, 3281410 - 3280889
Alignment:
Q  160 tagtagcactaatattcaaaagagctgaatcatggttaaagttaaaataaaataaaaatctatattggtcttactgaattttcttctaaaacttgaaata 259  Q
    |||||||||||||||| |  |||||| ||||| |||||||  |||||  ||| ||| || ||||||| |||||||||||||||||| |   | |||||||    
T  3281410 tagtagcactaatatttaggagagctaaatcaaggttaaacataaaaagaaaaaaatatgtatattg-tcttactgaattttcttcaatggcctgaaata 3281312  T
Q  260 tatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgt 359  Q
    |||||||||||||| |||||||||||||||||||||| ||| ||  |||||| ||||||||||||||||||||||||||||||||||||||||| | |||    
T  3281311 tatcttcatggaaccacaacctgctacgttttccaggctctcttactgattcctgtcttacaatttctttacccatgtcttctatcaagtcatgcattgt 3281212  T
Q  360 cacaaagcgctcatt------aataatcttcacaagagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcata 453  Q
     |||  |   | |||      |  |||| | |  |||| |||||||||||| |||||||| |||||| |||||| ||||||||||||| || ||||||||    
T  3281211 gacactg---taattccaccgacaaatccttaatagagtttttttaaccaaaactccaatatgatatttcatgcattgaccgtaatgatcagaaagcata 3281115  T
Q  454 tcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagta 553  Q
    ||||||| || ||| |  ||||||||||| |||||||||||||||||||||||||||||   ||| ||||||||||||||||||||||||||   |||||    
T  3281114 tcttccatctgttttaggttataccctttaaagcaacaagcaatgtcgagaaaaacactttgctcgtcttcctccaaagcatcaaaactcactttaagta 3281015  T
Q  554 ttttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagttggaacctaatatttccaa 653  Q
    | || |||||||||| | ||||||| ||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||| ||| ||    
T  3281014 tcttctgaatctctttattaggaatcctttcatatcgatccaacaaagaattccactcttttatattctttccaaacaagttggaacctaatacttctaa 3280915  T
Q  654 ggccaatggaaggccagcagtataat 679  Q
     |||||||||||||||| || |||||    
T  3280914 tgccaatggaaggccagaagcataat 3280889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 3281556 - 3281493
Alignment:
Q  28 gaaaatccaaacgtatgatttcaatttgacttgttccctacaaaaagtacaaatcaaccaaaac 91  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3281556 gaaaatccaaatgtatgatttcaatttgacttgttccctacaaaaaggacaaatcaaccaaaac 3281493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 17991753 - 17991822
Alignment:
Q  286 cgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgta 355  Q
    |||| |||||| ||||| ||||||||||| |  || ||||||||||||||||| ||||||||||||||||    
T  17991753 cgttctccaggctctttaggtgattcttgccgaacgatttctttacccatgtcctctatcaagtcatgta 17991822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 5e-58; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 237 - 670
Target Start/End: Complemental strand, 16692539 - 16692106
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||||||||||||||| ||||||||| || ||| ||||||| || ||||| ||||| | |||||| ||||||| ||  ||||||||||||||||||    
T  16692539 attttcttctaaaacttgaactatatcttcgtgaaaccacaacctactgcgtttaccaggatgttttggggattcttttcggacaatttctttacccatg 16692440  T
Q  337 tcttctatcaagtcatgtaatgtcacaaagcgctcattaat-aatcttcacaagagattttttaaccaacactccaatgtgatatctcatgcgttgaccg 435  Q
    || || ||||||| ||| ||||||||| | | | |||| || |||||| | ||| ||||||| |||||| |||||||| || ||| | |||| || |||     
T  16692439 tcctcaatcaagtgatgcaatgtcacataaccc-cattgattaatctttataagggatttttcaaccaatactccaatatggtattttatgcatttacca 16692341  T
Q  436 taatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcat 535  Q
    |||||||||||||| |||   || || ||  |||| | ||| ||||||||||||||||||||||| | |||||||||| | |||||||||||||||  ||    
T  16692340 taatgagcacaaagtataaactcaacttccgtcaaatcatatcctttgaagcaacaagcaatgtccaaaaaaacactcttttcatcttcctccaaactat 16692241  T
Q  536 caaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttccatacaagtt 635  Q
    ||||||| ||   ||||||||| |||||   || || |||||| | |||||||||||| ||   ||| |||||||||||||||| ||||||| |||||||    
T  16692240 caaaacttactttaagtattttgtgaattcgtttaccaggaatccattcatatcgatcaaatgtagatttccattcttctatattctttccaaacaagtt 16692141  T
Q  636 ggaacctaatatttccaaggccaatggaaggccag 670  Q
     || |||| || ||| || || |||||||||||||    
T  16692140 agatcctactacttctaaagctaatggaaggccag 16692106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 470 - 508
Target Start/End: Complemental strand, 13717639 - 13717601
Alignment:
Q  470 atttataccctttgaagcaacaagcaatgtcgagaaaaa 508  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  13717639 atttatatcctttgaagcaacaagcaatgtcaagaaaaa 13717601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 6e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 232 - 365
Target Start/End: Complemental strand, 26137565 - 26137432
Alignment:
Q  232 actgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttac 331  Q
    |||| |||||||| |||||| |||| |||||||||||| ||| ||||||| || ||||||||||||||||| |||||||||||||  |||||||||||||    
T  26137565 actgtattttcttttaaaacatgaactatatcttcatgaaaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttctttac 26137466  T
Q  332 ccatgtcttctatcaagtcatgtaatgtcacaaa 365  Q
    |||| || ||||||||||||||||||| ||||||    
T  26137465 ccatatcctctatcaagtcatgtaatgccacaaa 26137432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 237 - 359
Target Start/End: Original strand, 5921979 - 5922101
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||||||||||||||| |||||||||| || || | ||||| || || |||||||| ||||| |||||||||||||| ||||||||||| ||||||    
T  5921979 attttcttctaaaacttgaactatatcttcagggcaccataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttcttttcccatg 5922078  T
Q  337 tcttctatcaagtcatgtaatgt 359  Q
    || |||||||  |||||||||||    
T  5922079 tcctctatcacatcatgtaatgt 5922101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 277 - 537
Target Start/End: Original strand, 28126228 - 28126485
Alignment:
Q  277 aacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcacaaagcgctcattaa 376  Q
    |||||| | |||| |||||| |||||  |||||||||  |  || |||||||||||| | || |||||||||||||||||||||||| |  |   | ||     
T  28126228 aacctgttgcgttctccaggctctttacgtgattctttccggacgatttctttacccgtatcctctatcaagtcatgtaatgtcacatattg---agtat 28126324  T
Q  377 taatcttcacaagagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttata 476  Q
    ||||||  |  |||||||||| ||||||||||||||  ||||   | ||||  || || |||||||||  ||| || | ||| |||||| ||||| ||||    
T  28126325 taatctcaatgagagatttttcaaccaacactccaacatgatgctttatgcaatggccataatgagcatgaagtatcttttcaacctctgtcaatctata 28126424  T
Q  477 ccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    |||||||||||| ||||| || |||||||| |||||   ||||||||||||||||||||||    
T  28126425 ccctttgaagcagcaagctatatcgagaaagacactttgctcatcttcctccaaagcatca 28126485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 478 - 545
Target Start/End: Original strand, 5922220 - 5922287
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcac 545  Q
    |||||||||||||||||||| || |||||||||||  |||| ||||| |||||||||||||| |||||    
T  5922220 cctttgaagcaacaagcaatatcaagaaaaacacttttctcttcttcttccaaagcatcaaagctcac 5922287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 277 - 363
Target Start/End: Original strand, 266893 - 266979
Alignment:
Q  277 aacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||| || |||| |||||| ||||| ||||||||||| |  || | ||||||||||||||| ||||||| ||||||||||||||||    
T  266893 aacctacttcgttctccaggctctttaggtgattcttggcggaccacttctttacccatgtcctctatcatgtcatgtaatgtcaca 266979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 28132084 - 28132125
Alignment:
Q  322 atttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    |||||||||||  |||||||||||||||||||||||||||||    
T  28132084 atttctttacctgtgtcttctatcaagtcatgtaatgtcaca 28132125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 478 - 568
Target Start/End: Original strand, 267091 - 267181
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctctt 568  Q
    ||||||||||||||||||||||| | ||| ||||||  ||| ||||| |||||| ||||| | |||||   |||||| ||||| |||||||    
T  267091 cctttgaagcaacaagcaatgtctaaaaagacactctgctcctcttcttccaaaccatcatagctcactttaagtatcttttggatctctt 267181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 536
Target Start/End: Original strand, 28132241 - 28132310
Alignment:
Q  467 tcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatc 536  Q
    ||||| ||||||| |||||||||||||| || || ||||| |||||   ||| |||||||||||||||||    
T  28132241 tcaatctataccccttgaagcaacaagctatatccagaaagacactttgctcctcttcctccaaagcatc 28132310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 388 - 539
Target Start/End: Complemental strand, 44478 - 44327
Alignment:
Q  388 agagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagc 487  Q
    |||||||||| | ||||||| |  || |||||| ||||||  | ||| ||||||||| |||| |||||||| |  |||||||| ||||| ||||||||||    
T  44478 agagatttttcatccaacacactgatttgatatttcatgcagttaccataatgagcataaagtatatcttcaagttctttcaaattatatcctttgaagc 44379  T
Q  488 aacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaa 539  Q
    | ||||||||||||||||||||| ||  |||||||| |||||||||||||||    
T  44378 agcaagcaatgtcgagaaaaacattctgctcatctttctccaaagcatcaaa 44327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 484 - 542
Target Start/End: Complemental strand, 40940 - 40882
Alignment:
Q  484 aagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaact 542  Q
    |||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||    
T  40940 aagcaacaagcaatgtcgagaaaaacactttgctcatctttctccaaagcatcaaaact 40882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 237 - 364
Target Start/End: Complemental strand, 44638 - 44511
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||||||| || | || |||||||| ||||||| ||||||||||| || ||||||| || ||||| |||| ||   | |||||||||||||||||     
T  44638 attttcttctaagacatcaattatatctttatggaaccacaacctgctatgtcttccaggctcatttggagatttttcattgacaatttctttacccatt 44539  T
Q  337 tcttctatcaagtcatgtaatgtcacaa 364  Q
    |  |||||||||  |||||| |||||||    
T  44538 ttctctatcaagaaatgtaacgtcacaa 44511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 319 - 670
Target Start/End: Original strand, 5089545 - 5089893
Alignment:
Q  319 acaatttctttacccatgtcttctatcaagtcatgtaatgtcacaaagcg-ctcattaat-aatcttcacaagagattttttaaccaacactccaatgtg 416  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||   || ||||  | | |||||| |  |||||||| | |||||||  ||| || ||    
T  5089545 acaatttctttacccatgatttctatcaggtcatgtaatgtcaca---cgactca--actgaatctttatgagagatttatcaaccaactttcctatatg 5089639  T
Q  417 atatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctc 516  Q
    |||| ||||||  | ||| |||||||||||||| |||| ||| ||||| | |||  |||| |||||||| ||||||||||||||||| |||||||||  |    
T  5089640 atatttcatgcaataaccataatgagcacaaagtatatattcgacctcatccaagctatatcctttgaaacaacaagcaatgtcgaggaaaacactctgc 5089739  T
Q  517 tcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttcta 616  Q
    |||| |||  | |||  || ||| |||||   |||||| ||||| || |||| | ||||||| ||||||||   ||| |  ||||| ||||||| |||||    
T  5089740 tcatattcacctaaattattaaagctcactataagtatcttttggatttctttattaggaatcctttcatactcatctagtaaagatttccatttttcta 5089839  T
Q  617 tatgctttccatacaagttggaacctaatatttccaaggccaatggaaggccag 670  Q
    ||| ||||||| |||| |||||||| |  | ||| || ||||||||||||||||    
T  5089840 tatcctttccaaacaaattggaacccacaacttctaaagccaatggaaggccag 5089893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 18678104 - 18678191
Alignment:
Q  275 acaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcac 362  Q
    ||||||| ||||| ||| |||| ||||| ||||||||||  |  || ||||||||||||||| | |||| ||||||||||||||||||    
T  18678104 acaacctactacgcttttcaggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcac 18678191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 18688169 - 18688248
Alignment:
Q  283 ctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcac 362  Q
    ||||| ||| |||| ||||| ||||||||||  |  |||||||||||||||||| | |||| ||||||||||||||||||    
T  18688169 ctacgcttttcaggctctttaggtgattctttccggacaatttctttacccatgacctctagcaagtcatgtaatgtcac 18688248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 568
Target Start/End: Complemental strand, 18075192 - 18075102
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctctt 568  Q
    ||||||||||||||||||||||| ||||| |||||   ||| ||||||||||||| |||| | |||||   ||||||| |||| |||||||    
T  18075192 cctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcctccaaagaatcatagctcactttaagtattctttggatctctt 18075102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 18730050 - 18730130
Alignment:
Q  283 ctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||| ||| |||| ||||| ||||||||||  |  || ||||||||||||||| | |||| |||||||||||||||||||    
T  18730050 ctacgcttttcaggctctttgggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcaca 18730130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 18654024 - 18654111
Alignment:
Q  275 acaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcac 362  Q
    ||||||| ||||| ||| |||| | ||| ||||||||||  |  || ||||||||||||||| | |||| ||||||||||||||||||    
T  18654024 acaacctactacgcttttcaggctgtttaggtgattctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcac 18654111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 18697955 - 18698034
Alignment:
Q  283 ctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcac 362  Q
    ||||| ||| |||| ||||| ||||||||||  |  || ||||||||||||||| | |||| ||||||||||||||||||    
T  18697955 ctacgcttttcaggctctttgggtgattctttccggacgatttctttacccatggcctctagcaagtcatgtaatgtcac 18698034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 283 - 362
Target Start/End: Original strand, 18722625 - 18722704
Alignment:
Q  283 ctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcac 362  Q
    ||||||||| |||| ||||| ||||||||||  |  |  ||||||||||||||| | |||| ||||||||||||||||||    
T  18722625 ctacgtttttcaggctctttaggtgattctttacgaatgatttctttacccatgacctctagcaagtcatgtaatgtcac 18722704  T

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Target: chr8 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 232 - 355
Target Start/End: Complemental strand, 35984982 - 35984859
Alignment:
Q  232 actgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttac 331  Q
    |||| ||| |||||||||||||||| ||||||||||||  || | ||||  ||||| ||||||||||||| |||||||||  |||  |||||||| ||||    
T  35984982 actgtattctcttctaaaacttgaattatatcttcatgagaccataaccgactacgctttccaggttcttctggtgattccagtcgaacaatttccttac 35984883  T
Q  332 ccatgtcttctatcaagtcatgta 355  Q
    ||||||| ||||||||| ||||||    
T  35984882 ccatgtcctctatcaaggcatgta 35984859  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 232 - 355
Target Start/End: Complemental strand, 31906737 - 31906614
Alignment:
Q  232 actgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttac 331  Q
    |||||||| |||||||||||||||| ||||||||| || ||| | || |  ||||||||||||||||| | |||||||||   ||| ||||||||||||     
T  31906737 actgaattgtcttctaaaacttgaattatatcttcgtgaaaccataatcgactacgttttccaggttcgtctggtgattccaatctaacaatttctttag 31906638  T
Q  332 ccatgtcttctatcaagtcatgta 355  Q
    |||||||  | |||||||||||||    
T  31906637 ccatgtccccaatcaagtcatgta 31906614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 237 - 363
Target Start/End: Complemental strand, 12590413 - 12590287
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||||||||||||||| || ||||| |  | || | ||||| |||||||||||||| | ||  |||||||||||||| || |||||||| |||||     
T  12590413 attttcttctaaaacttgaattaaatctttagaggaccataacctactacgttttccaggattttccggtgattcttgtctaactatttctttccccata 12590314  T
Q  337 tcttctatcaagtcatgtaatgtcaca 363  Q
    || |||| ||| |||||||||||||||    
T  12590313 tcctctaccaaatcatgtaatgtcaca 12590287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 301 - 364
Target Start/End: Original strand, 16371702 - 16371765
Alignment:
Q  301 tttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcacaa 364  Q
    ||||||||||||||||  ||||||||||||||||||||||||| || || ||||||||||||||    
T  16371702 tttggtgattcttgtcggacaatttctttacccatgtcttctaccaggttatgtaatgtcacaa 16371765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 489 - 641
Target Start/End: Complemental strand, 31906474 - 31906322
Alignment:
Q  489 acaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatat 588  Q
    |||||| ||||| |||||||||||  |||||||||||||||||||||||||||| ||    ||||| ||||| ||||||| | | |||||  ||||||||    
T  31906474 acaagccatgtcaagaaaaacacttttctcatcttcctccaaagcatcaaaacttactttgagtatattttggatctctttatttggaatgatttcatat 31906375  T
Q  589 cgatccaacaaagaattccattcttctatatgctttccatacaagttggaacc 641  Q
    ||||  ||   ||| | |||||||| ||||| ||||||| | || ||||||||    
T  31906374 cgatgtaatgcagattcccattcttgtatattctttccaaataaattggaacc 31906322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 16441685 - 16441598
Alignment:
Q  277 aacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcacaa 364  Q
    ||||| |||||||| ||||| || ||||||||||| ||||  ||||||||| | |||||||||  |||||||| ||||||||||||||    
T  16441685 aacctactacgtttgccaggctcatttggtgattcctgtcgaacaatttctctgcccatgtctcgtatcaagttatgtaatgtcacaa 16441598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 16450326 - 16450277
Alignment:
Q  481 ttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaa 530  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| |||||    
T  16450326 ttgaagaaacaagcaatgtcaagaaaaacactcctctcatcttcatccaa 16450277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 587
Target Start/End: Complemental strand, 35984720 - 35984621
Alignment:
Q  488 aacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcata 587  Q
    ||||||||||||| |||||||||||   |||||||||||| |||||||||||||| ||   |||||| ||||| || |||| | |||||||  |||||||    
T  35984720 aacaagcaatgtcaagaaaaacactttgctcatcttcctctaaagcatcaaaacttactttaagtatcttttggatgtctttattaggaatggtttcata 35984621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 544
Target Start/End: Complemental strand, 12590172 - 12590106
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactca 544  Q
    |||||||||||||||||||| || |||||||||  | |||| ||||||| |||||||||||| ||||    
T  12590172 cctttgaagcaacaagcaatatcaagaaaaacagacttctcttcttcctgcaaagcatcaaagctca 12590106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 237 - 668
Target Start/End: Original strand, 56795 - 57235
Alignment:
Q  237 attttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatg 336  Q
    |||||||||||| || | || |||||||| ||||||| | ||||| |||||| ||||||| |||||||| || ||||  |  |||||||||||||||||     
T  56795 attttcttctaagacataaattatatctttatggaaccataacctactacgtcttccaggctcttttggagactctttgcggacaatttctttacccatt 56894  T
Q  337 tcttctatcaagtcatgtaatgtcacaa------agcgct-----cattaataatcttcacaagagattttttaaccaacactccaatgtgatatctcat 425  Q
    |  ||||||||| ||||||| |||||||        | ||     ||||  | ||||| |  |||||||||| |  |||||||| ||| |||| | ||||    
T  56895 ttctctatcaaggcatgtaacgtcacaacataattcccctggtaccatt--tgatctttatgagagatttttcatgcaacactctaatttgatgtttcat 56992  T
Q  426 gcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcc 525  Q
    ||    ||| |||||||||  ||| |||||||| || ||||| || | | | ||||  ||| |||||| |||||||||||||||| || |||||||||||    
T  56993 gcagctaccataatgagcatgaagtatatcttcaacttcttttaaatcacatccttctaagaaacaagaaatgtcgagaaaaacattcttctcatcttcc 57092  T
Q  526 tccaaagcatcaaaactcacacgaagtattttttgaatctcttcactaggaattctttcatatcgatccaacaaagaattccattcttctatatgctttc 625  Q
    |||||||||||||| || ||   |||||| | ||| |||| || | | ||||| ||||||||  |||  ||   ||| ||||||||| |||||| |||||    
T  57093 tccaaagcatcaaagcttactttaagtatctcttggatctttttaatgggaatcctttcatactgatttaatgcagatttccattctcctatattctttc 57192  T
Q  626 catacaagttggaacctaatatttccaaggccaatggaaggcc 668  Q
    || ||||||| ||||| | || ||| |||||||||||||||||    
T  57193 caaacaagttcgaacccactacttctaaggccaatggaaggcc 57235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 232 - 363
Target Start/End: Original strand, 211626 - 211757
Alignment:
Q  232 actgaattttcttctaaaacttgaaatatatcttcatggaacgacaacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttac 331  Q
    |||| |||||| |||||||| || | ||||||||||  |||| | || || || ||||||||||| | ||  |||||||||||||| ||||||||||| |    
T  211626 actgtattttcctctaaaacgtgcattatatcttcagagaaccataatctactgcgttttccaggattttcaggtgattcttgtctaacaatttctttcc 211725  T
Q  332 ccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    |||| ||||||| ||| ||||| | |||||||    
T  211726 ccatatcttctaccaaatcatgcattgtcaca 211757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 467 - 537
Target Start/End: Original strand, 238605 - 238675
Alignment:
Q  467 tcaatttataccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    |||||||||| |||||||||||||| |||||||| ||||||||| |  |||| |||||||  |||||||||    
T  238605 tcaatttatatcctttgaagcaacatgcaatgtcaagaaaaacaattttctcttcttcctgtaaagcatca 238675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 478 - 510
Target Start/End: Original strand, 211872 - 211904
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaaca 510  Q
    ||||||||||||||||||||||| |||||||||    
T  211872 cctttgaagcaacaagcaatgtcaagaaaaaca 211904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 398 - 333
Alignment:
Q  298 tcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||| || |||||||||| ||| | ||||||||||||||| ||||| ||||||||||||||||||    
T  398 tctttaggcgattcttgtcgtacgacttctttacccatgtcctctataaagtcatgtaatgtcaca 333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 537
Target Start/End: Complemental strand, 301 - 141
Alignment:
Q  377 taatcttcacaagagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttata 476  Q
    ||||||| || |||||||||| | |||||||||| |  |||| | | ||||  || || ||||||||||  || |||||||| | ||| ||| ||  | |    
T  301 taatcttaacgagagatttttcagccaacactcctagatgatgttttatgcaatggccataatgagcacgtagtatatcttcaaactccttccatccaca 202  T
Q  477 ccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
     |||||||||||||| |||||||| |||||||||||   ||  ||||||||||||||||||    
T  201 tcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatca 141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 298 - 363
Target Start/End: Complemental strand, 9116 - 9051
Alignment:
Q  298 tcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    ||||| || |||||||||| ||| | ||||||||||||||| ||||| ||||||||||||||||||    
T  9116 tctttaggcgattcttgtcgtacgacttctttacccatgtcctctataaagtcatgtaatgtcaca 9051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 542
Target Start/End: Complemental strand, 9019 - 8854
Alignment:
Q  377 taatcttcacaagagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttata 476  Q
    ||||||| || |||||||||| | |||||||||| |  |||| | | ||||  || || ||||||||||  || |||||||| | ||| ||| ||  | |    
T  9019 taatcttaacgagagatttttcagccaacactcctagatgatgttttatgcaatggccataatgagcacgtagtatatcttcaaactccttccatccaca 8920  T
Q  477 ccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaact 542  Q
     |||||||||||||| |||||||| |||||||||||   ||  |||||||||||||||||| ||||    
T  8919 tcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatcataact 8854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 304 - 363
Target Start/End: Complemental strand, 615401 - 615342
Alignment:
Q  304 ggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 363  Q
    |||||||||||||| ||||||||||| ||||| || |||| ||| |||||||||||||||    
T  615401 ggtgattcttgtctaacaatttctttccccatatcctctaccaaatcatgtaatgtcaca 615342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 478 - 510
Target Start/End: Complemental strand, 615227 - 615195
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaaca 510  Q
    ||||||||||||||||||||||| |||||||||    
T  615227 cctttgaagcaacaagcaatgtcaagaaaaaca 615195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 7583 - 7641
Alignment:
Q  303 tggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtca 361  Q
    |||||||||| |||| ||||||||||| ||||| ||||||||||  |||||||||||||    
T  7583 tggtgattctagtctgacaatttcttttcccatatcttctatcagatcatgtaatgtca 7641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 67919 - 67865
Alignment:
Q  303 tggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaat 357  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||  |||||||||    
T  67919 tggtgattctagtctgacaatttcttttcccatgtcttctatcagatcatgtaat 67865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 32572 - 32519
Alignment:
Q  303 tggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaa 356  Q
    |||||||||| |||| ||||||||||| ||||| ||||||||||  ||||||||    
T  32572 tggtgattctagtctgacaatttcttttcccatatcttctatcagatcatgtaa 32519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 37321 - 37268
Alignment:
Q  303 tggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaa 356  Q
    |||||||||| |||| ||||||||||| ||||| ||||||||||  ||||||||    
T  37321 tggtgattctagtctgacaatttcttttcccatatcttctatcagatcatgtaa 37268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 478 - 568
Target Start/End: Complemental strand, 61000 - 60910
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctctt 568  Q
    ||||||||||||||||||||||| ||||| |||||   ||| ||||||||||||| |||| | |||||   ||||||| |||| |||||||    
T  61000 cctttgaagcaacaagcaatgtctagaaagacactttgctcctcttcctccaaagaatcatagctcactttaagtattctttggatctctt 60910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 568
Target Start/End: Original strand, 2292 - 2380
Alignment:
Q  480 tttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatcaaaactcacacgaagtattttttgaatctctt 568  Q
    ||||||||||||||||||||| ||||| |||||   ||  |||||||||||||||||| |||| ||   |||||| ||||| |||||||    
T  2292 tttgaagcaacaagcaatgtctagaaagacactttgctgctcttcctccaaagcatcataacttactttaagtatcttttggatctctt 2380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 2112 - 2162
Alignment:
Q  306 tgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaa 356  Q
    |||||||||||  || | ||||||||||||||| |||||||||||||||||    
T  2112 tgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaa 2162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 377 - 537
Target Start/End: Original strand, 12325 - 12485
Alignment:
Q  377 taatcttcacaagagattttttaaccaacactccaatgtgatatctcatgcgttgaccgtaatgagcacaaagcatatcttccacctctttcaatttata 476  Q
    ||||||| || |||||||||| | |||||||| | |  |||| | | ||||| || || |||||||||| ||| |||| ||| | ||| ||| ||  | |    
T  12325 taatcttaacgagagatttttcagccaacactactagatgatgtgttatgcgatggccataatgagcacgaagtatatattcaaactccttccatccaca 12424  T
Q  477 ccctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
     |||||||||||||| |||||||| |||||||||||   ||  ||||||||||||||||||    
T  12425 tcctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatca 12485  T

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Target: scaffold0277; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 478 - 537
Target Start/End: Original strand, 3463 - 3522
Alignment:
Q  478 cctttgaagcaacaagcaatgtcgagaaaaacactcctctcatcttcctccaaagcatca 537  Q
    |||||||||||||| |||||||| |||||||||||   ||  ||||||||||||||||||    
T  3463 cctttgaagcaacaggcaatgtctagaaaaacactttgctgctcttcctccaaagcatca 3522  T

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Target: scaffold0277; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 3261 - 3331
Alignment:
Q  291 tccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtca 361  Q
    |||||| ||||| || ||||||||||  || | ||||||||||||||| | |||||||||||||| |||||    
T  3261 tccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgtagtgtca 3331  T

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Target: scaffold0277; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 361
Target Start/End: Original strand, 12224 - 12294
Alignment:
Q  291 tccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtca 361  Q
    |||||| ||||| || ||||||||||  || | ||||||||||||||| | |||||||||||||| |||||    
T  12224 tccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatcaagtcatgtagtgtca 12294  T

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